Rh6DG261700

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007761
Physical Location & Seq
Reverse (-)
45315479 .. 45319632
4154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG261700.1

Sequence Viewer

Length: 951 bp
ATGGCTTCTTCTTGTGCTAACCAGAACTTGGCGATGCTAATCTCACTGACTGTGATTCTGCTAATCTCACCCGCGTATTCCCAGAGCTGCTCCTCCCAGTCCTTCGCCAACAAAATGCTCTACACCCAATGCGCCGACCTCCCAACCCTCAGCTCTACCCTCCACTGGTACTACGACTCCGCCAACTCCACTCTCGCCATCGCCTTCATCGCGCCGCCGGCCAAGCCCGCCGGATGGACCTCCTGGGCCATCAACCCCACCGGCACCGGCATGGCCGGGGCCCAAACGCTCCTCGCCTACAAAACCTCCTCCGGCGCCATGGCCGTCAAGACCTTCAACATCAGCTCCTACAGCTCCATCGTACCCGGAAAGCTCGCCTTCGACGTCTGGGACACGGCCGCTGAGTCCTCCGGCGGGGTCTTCCGGTTGTTTGCCAAGGTGAAGGTGAAGACTGGGCAGGTGAACCACGTCTGGCAGGTGGGGCCGTCCGTCGTAGATGGGTTTCCGGCGAAGCATGCTTTTGATGCACCCAATCTTCAGGCTAAAGGGACTCTCACCTTGACCGGAACTAATGCCGGTGTCGCCGGGGCCGGAGCCGATCCCAAGTTGAAGGACAGGAATATTCATGGAATTCTGAATGCTGTGAGTTGGGGGTTTTTGTTTCCACTGGGGATCATTATAGCAAGGTACATCAGGACTTTTCCGTCTGCGGATCCTGCATGGTTTTATCTCCATATATCCTGCCAAATATCTGCTTATGCCATCGGTGTCGCCGGCTGGGCCACCGGACTGAAGCTTGGAAGGGGTGAATACACCACCCACCGCAACATCGGAATTACCCTCTTCACCTTTGCAACTGTGCAGGTAAAATTCTTACCCAATTTTGTGCACACAATAGTAACGGATAAAAGTGATTTGGTACTTGATAGCATTGAGAATTTGAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

316

Amino Acids

33.72

Weight (kDa)

9.2

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 91 - 187 2.8e-27 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 448, 466
AasI GACNNNNNNGTC 1 cut(s) 703
AatII GACGTC 1 cut(s) 387
Acc36I ACCTGC 3 cut(s) 448, 466, 853
AccB1I GGYRCC 2 cut(s) 263, 314
AccB7I CCANNNNNTGG 1 cut(s) 28
AccII CGCG 2 cut(s) 74, 212
AciI CCGC 8 cut(s) 72, 180, 215, 228, 399, 414, 710, 823
AclWI GGATC 4 cut(s) 593, 680, 707, 720
AcoI YGGCCR 4 cut(s) 219, 273, 321, 396
AcsI RAATTY 3 cut(s) 630, 869, 937
AcuI CTGAAG 2 cut(s) 521, 812
AcyI GRCGYC 2 cut(s) 315, 384
AfaI GTAC 4 cut(s) 170, 363, 689, 921
AfiI CCNNNNNNNGG 4 cut(s) 28, 165, 234, 414
AgsI TTSAA 3 cut(s) 337, 610, 943
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 6 cut(s) 87, 153, 345, 354, 373, 796
AluI AGCT 6 cut(s) 87, 153, 345, 354, 373, 796
Alw21I GWGCWC 1 cut(s) 891
Alw44I GTGCAC 1 cut(s) 887
AlwI GGATC 4 cut(s) 593, 680, 707, 720
AoxI GGCC 9 cut(s) 219, 246, 273, 279, 321, 396, 482, 588, 780
ApaI GGGCCC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 887
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 3 cut(s) 630, 869, 937
AspLEI GCGC 3 cut(s) 134, 214, 317
AspS9I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
AsuC2I CCSGG 3 cut(s) 277, 366, 586
AsuHPI GGTGA 7 cut(s) 60, 451, 457, 472, 547, 818, 838
AvaII GGWCC 1 cut(s) 237
BaeGI GKGCMC 2 cut(s) 283, 891
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 2 cut(s) 263, 314
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 412, 455
Bbv12I GWGCWC 1 cut(s) 891
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 74
BccI CCATC 6 cut(s) 206, 228, 257, 365, 491, 770
BceAI ACGGC 3 cut(s) 308, 411, 469
BciT130I CCWGG 1 cut(s) 244
BcnI CCSGG 3 cut(s) 277, 366, 586
BfmI CTRYAG 1 cut(s) 349
BfoI RGCGCY 1 cut(s) 318
BfuAI ACCTGC 3 cut(s) 448, 466, 853
BglI GCCNNNNNGGC 1 cut(s) 779
BisI GCNGC 3 cut(s) 88, 215, 399
BlsI GCNGC 3 cut(s) 89, 216, 400
Bme1390I CCNGG 4 cut(s) 244, 277, 366, 586
Bme18I GGWCC 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
BmiI GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
BmrFI CCNGG 4 cut(s) 244, 277, 366, 586
BmrI ACTGGG 3 cut(s) 91, 462, 677
BmsI GCATC 2 cut(s) 24, 514
BmuI ACTGGG 3 cut(s) 91, 462, 677
BpiI GAAGAC 2 cut(s) 412, 455
Bpu10I CCTNAGC 1 cut(s) 149
BpuMI CCSGG 3 cut(s) 277, 366, 586
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 315, 384
BsaJI CCNNGG 5 cut(s) 243, 276, 318, 435, 585
BsaWI WCCGGW 3 cut(s) 423, 563, 785
BsaXI ACNNNNNCTCC 6 cut(s) 161, 191, 290, 320, 329, 359
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 165, 234, 414
Bse118I RCCGGY 5 cut(s) 217, 260, 266, 575, 773
Bse1I ACTGG 4 cut(s) 97, 170, 457, 672
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 5 cut(s) 243, 276, 318, 435, 585
BseGI GGATG 1 cut(s) 239
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 4 cut(s) 28, 165, 234, 414
BseMII CTCAG 2 cut(s) 163, 393
BseNI ACTGG 4 cut(s) 97, 170, 457, 672
BseRI GAGGAG 3 cut(s) 82, 281, 298
BseSI GKGCMC 2 cut(s) 283, 891
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 777
BsgI GTGCAG 1 cut(s) 881
Bsh1236I CGCG 2 cut(s) 74, 212
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
BshNI GGYRCC 2 cut(s) 263, 314
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 891
BslFI GGGAC 2 cut(s) 404, 562
BslI CCNNNNNNNGG 4 cut(s) 28, 165, 234, 414
BsmFI GGGAC 2 cut(s) 404, 562
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 283, 891
Bsp143I GATC 3 cut(s) 598, 672, 712
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 8 cut(s) 72, 180, 215, 228, 399, 414, 710, 823
BspANI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
BspCNI CTCAG 2 cut(s) 162, 394
BspFNI CGCG 2 cut(s) 74, 212
BspLI GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
BspMI ACCTGC 3 cut(s) 448, 466, 853
BspPI GGATC 4 cut(s) 593, 680, 707, 720
BspT107I GGYRCC 2 cut(s) 263, 314
BsrFI RCCGGY 5 cut(s) 217, 260, 266, 575, 773
BsrI ACTGG 4 cut(s) 97, 170, 457, 672
BssAI RCCGGY 5 cut(s) 217, 260, 266, 575, 773
BssECI CCNNGG 5 cut(s) 243, 276, 318, 435, 585
BssMI GATC 3 cut(s) 598, 672, 712
BssNI GRCGYC 2 cut(s) 315, 384
BssT1I CCWWGG 2 cut(s) 318, 435
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 52, 859
Bst6I CTCTTC 1 cut(s) 848
BstACI GRCGYC 2 cut(s) 315, 384
BstC8I GCNNGC 5 cut(s) 219, 228, 375, 516, 775
BstDEI CTNAG 2 cut(s) 149, 402
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 2 cut(s) 74, 212
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 3 cut(s) 134, 214, 317
BstKTI GATC 3 cut(s) 601, 675, 715
BstMBI GATC 3 cut(s) 598, 672, 712
BstMCI CGRYCG 1 cut(s) 399
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 4 cut(s) 242, 275, 364, 584
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 2 cut(s) 283, 891
BstUI CGCG 2 cut(s) 74, 212
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 2 cut(s) 412, 455
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 3 cut(s) 47, 184, 193
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 44, 163, 665
BveI ACCTGC 3 cut(s) 448, 466, 853
Cac8I GCNNGC 5 cut(s) 219, 228, 375, 516, 775
CfoI GCGC 3 cut(s) 134, 214, 317
Cfr10I RCCGGY 5 cut(s) 217, 260, 266, 575, 773
Cfr13I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
Csp6I GTAC 4 cut(s) 169, 362, 688, 920
CviAII CATG 5 cut(s) 271, 319, 515, 626, 720
CviQI GTAC 4 cut(s) 169, 362, 688, 920
DdeI CTNAG 2 cut(s) 149, 402
DinI GGCGCC 1 cut(s) 316
DpnI GATC 3 cut(s) 600, 674, 714
DpnII GATC 3 cut(s) 598, 672, 712
DrdI GACNNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 4 cut(s) 219, 273, 321, 396
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
EciI GGCGGA 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 318, 435
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 396
Eco57I CTGAAG 2 cut(s) 521, 812
EcoO109I RGGNCCY 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 630
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 2 cut(s) 318, 435
EcoT38I GRGCYC 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 318, 435
FaeI CATG 5 cut(s) 274, 322, 518, 629, 723
FaiI YATR 9 cut(s) 272, 320, 516, 627, 680, 721, 735, 737, 759
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 2 cut(s) 404, 562
FatI CATG 5 cut(s) 270, 318, 514, 625, 719
FauI CCCGC 3 cut(s) 79, 235, 407
Fnu4HI GCNGC 3 cut(s) 88, 215, 399
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 88, 215, 399
GlaI GCGC 3 cut(s) 133, 213, 316
GluI GCNGC 3 cut(s) 88, 215, 399
GsaI CCCAGC 1 cut(s) 781
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 9 cut(s) 221, 248, 275, 281, 323, 398, 484, 590, 782
HhaI GCGC 3 cut(s) 134, 214, 317
Hin1I GRCGYC 2 cut(s) 315, 384
Hin1II CATG 5 cut(s) 274, 322, 518, 629, 723
Hin6I GCGC 3 cut(s) 132, 212, 315
HinP1I GCGC 3 cut(s) 132, 212, 315
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 4 cut(s) 55, 176, 404, 550
HphI GGTGA 7 cut(s) 60, 451, 457, 472, 547, 818, 838
Hpy166II GTNNAC 2 cut(s) 463, 889
Hpy188I TCNGA 3 cut(s) 636, 833, 950
Hpy188III TCNNGA 2 cut(s) 328, 694
Hpy8I GTNNAC 2 cut(s) 463, 889
Hpy99I CGWCG 2 cut(s) 386, 494
HpyAV CCTTC 7 cut(s) 112, 214, 343, 388, 436, 604, 795
HpyCH4III ACNGT 2 cut(s) 52, 859
HpyCH4IV ACGT 2 cut(s) 384, 468
HpyCH4V TGCA 5 cut(s) 527, 719, 854, 862, 889
HpyF3I CTNAG 2 cut(s) 149, 402
HpySE526I ACGT 2 cut(s) 384, 468
Hsp92I GRCGYC 2 cut(s) 315, 384
Hsp92II CATG 5 cut(s) 274, 322, 518, 629, 723
HspAI GCGC 3 cut(s) 132, 212, 315
KasI GGCGCC 1 cut(s) 314
KroI GCCGGC 2 cut(s) 217, 773
KroNI GCCGGC 2 cut(s) 219, 775
Kzo9I GATC 3 cut(s) 598, 672, 712
LmnI GCTCC 5 cut(s) 95, 294, 350, 359, 593
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 2 cut(s) 24, 514
MaeII ACGT 2 cut(s) 384, 468
MaeIII GTNAC 1 cut(s) 898
MalI GATC 3 cut(s) 600, 674, 714
MboI GATC 3 cut(s) 598, 672, 712
MboII GAAGA 4 cut(s) 412, 460, 527, 835
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 2 cut(s) 283, 891
MluCI AATT 5 cut(s) 630, 834, 869, 880, 937
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 3 cut(s) 170, 413, 544
MroNI GCCGGC 2 cut(s) 217, 773
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 401
MspR9I CCNGG 4 cut(s) 244, 277, 366, 586
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 2 cut(s) 74, 212
NaeI GCCGGC 2 cut(s) 219, 775
NarI GGCGCC 1 cut(s) 315
NciI CCSGG 3 cut(s) 277, 366, 586
NcoI CCATGG 1 cut(s) 318
NdeII GATC 3 cut(s) 598, 672, 712
NgoMIV GCCGGC 2 cut(s) 217, 773
NlaIII CATG 5 cut(s) 274, 322, 518, 629, 723
NlaIV GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
NspI RCATGY 1 cut(s) 518
PaeI GCATGC 1 cut(s) 518
PaqCI CACCTGC 2 cut(s) 448, 466
PcsI WCGNNNNNNNCGW 1 cut(s) 381
PctI GAATGC 1 cut(s) 643
PdiI GCCGGC 2 cut(s) 219, 775
PfeI GAWTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 3 cut(s) 89, 216, 400
PleI GAGTC 3 cut(s) 170, 412, 544
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 3 cut(s) 170, 412, 544
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 777
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 8 cut(s) 265, 280, 281, 316, 483, 589, 595, 714
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 4 cut(s) 170, 363, 689, 921
RsaNI GTAC 4 cut(s) 169, 362, 688, 920
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 3 cut(s) 88, 215, 399
Sau3AI GATC 3 cut(s) 598, 672, 712
Sau96I GGNCC 7 cut(s) 237, 246, 279, 280, 482, 588, 780
SchI GAGTC 3 cut(s) 170, 413, 544
ScrFI CCNGG 4 cut(s) 244, 277, 366, 586
SduI GDGCHC 2 cut(s) 283, 891
SfaNI GCATC 2 cut(s) 24, 514
SfcI CTRYAG 1 cut(s) 349
SfoI GGCGCC 1 cut(s) 316
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 269
SphI GCATGC 1 cut(s) 518
Sse9I AATT 5 cut(s) 630, 834, 869, 880, 937
SsiI CCGC 8 cut(s) 72, 180, 215, 228, 399, 414, 710, 823
SspDI GGCGCC 1 cut(s) 314
SspI AATATT 1 cut(s) 622
StyD4I CCNGG 4 cut(s) 242, 275, 364, 584
StyI CCWWGG 2 cut(s) 318, 435
TaaI ACNGT 2 cut(s) 52, 859
TaiI ACGT 2 cut(s) 387, 471
TaqI TCGA 1 cut(s) 381
TasI AATT 5 cut(s) 630, 834, 869, 880, 937
TauI GCSGC 2 cut(s) 217, 401
TfiI GAWTC 1 cut(s) 55
TscAI CASTG 3 cut(s) 51, 170, 672
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 196, 614
TspGWI ACGGA 3 cut(s) 478, 693, 917
TspRI CASTG 3 cut(s) 51, 170, 672
Van91I CCANNNNNTGG 1 cut(s) 28
VneI GTGCAC 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 3 cut(s) 630, 869, 937
XceI RCATGY 1 cut(s) 518
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.