AT3G27010
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007171
Physical Location & Seq
Reverse (-)
9957376 .. 9958945
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27010.2

Sequence Viewer

Length: 945 bp
ATGGATCCCAAGAACCTAAATCGTCACCAAGTACCAAATTTCTTGAACCCACCACCACCACCGCGAAATCAGGGTTTGGTAGATGATGATGCTGCTTCTGCTGTTGTTTCCGACGAGAATCGCAAACCAACAACTGAGATTAAAGATTTCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACAAGAAGAGTCAGAATCAGAACCAGCTTGGTCCTAAGAGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAGGTCGACGAATTCGGATGCCTGCTCTTTGTGCTGCTAGGATTTTTCAATTGACTAGAGAATTGGGTCATAAATCTGATGGTGAAACTATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGATTATTGCAGCTACTGGTTCAGGAACTATACCGGCCTCTGCTTTAGCTTCTTCAGCTGCAACCTCTAACCATCATCAAGGTGGGTCTCTTACTGCTGGTTTAATGATCAGTCATGACTTAGATGGTGGGTCTAGTAGTAGTGGTAGACCATTAAATTGGGGGATTGGTGGCGGTGAAGGAGTTTCTAGGTCAAGTTTACCAACTGGGTTATGGCCAAATGTAGCTGGGTTTGGTTCTGGTGTGCCAACCACTGGTTTAATGAGTGAAGGAGCTGGTTATAGAATTGGGTTTCCTGGTTTTGATTTTCCTGGTGTTGGTCATATGAGTTTTGCATCTATTTTGGGTGGGAATCATAATCAGATGCCTGGACTTGAGTTAGGCTTGTCTCAAGAAGGGAATGTTGGTGTTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCAGGCTCAGGCTCAAGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGAACATCAGCAAGAGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAA

Protein Analysis

314

Amino Acids

33.39

Weight (kDa)

6.7

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 77 - 276 1.2e-28 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 157, 635
AccI GTMKAC 2 cut(s) 268, 529
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 62, 555
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 596
AcsI RAATTY 2 cut(s) 37, 273
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 157, 635, 698
AgsI TTSAA 4 cut(s) 46, 311, 368, 796
AjnI CCWGG 3 cut(s) 676, 691, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AluBI AGCT 9 cut(s) 211, 228, 374, 395, 431, 440, 608, 656, 851
AluI AGCT 9 cut(s) 211, 228, 374, 395, 431, 440, 608, 656, 851
Alw26I GTCTC 3 cut(s) 166, 474, 774
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 2 cut(s) 361, 398
AoxI GGCC 2 cut(s) 417, 596
ApeKI GCWGC 5 cut(s) 92, 296, 361, 392, 440
ApoI RAATTY 2 cut(s) 37, 273
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 5 cut(s) 17, 356, 569, 860, 923
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 598
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 5 cut(s) 79, 283, 348, 404, 427
BccI CCATC 5 cut(s) 335, 388, 462, 500, 823
BciT130I CCWGG 3 cut(s) 678, 693, 750
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 3 cut(s) 166, 474, 774
BfaI CTAG 4 cut(s) 300, 318, 516, 570
BisI GCNGC 5 cut(s) 93, 297, 362, 393, 441
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 5 cut(s) 94, 298, 363, 394, 442
Bme1390I CCNGG 3 cut(s) 678, 693, 750
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 678, 693, 750
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 5 cut(s) 79, 270, 725, 735, 886
BmuI ACTGGG 1 cut(s) 597
Bpu10I CCTNAGC 2 cut(s) 840, 934
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 5 cut(s) 756, 776, 831, 837, 912
Bsa29I ATCGAT 1 cut(s) 383
BsaI GGTCTC 2 cut(s) 166, 474
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 635, 698
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 4 cut(s) 355, 403, 592, 640
BseBI CCWGG 3 cut(s) 678, 693, 750
BseCI ATCGAT 1 cut(s) 383
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 157, 635, 698
BseMII CTCAG 5 cut(s) 126, 366, 815, 827, 854
BseNI ACTGG 4 cut(s) 355, 403, 592, 640
BseXI GCAGC 5 cut(s) 79, 283, 348, 404, 427
BseYI CCCAGC 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 419, 598
BshVI ATCGAT 1 cut(s) 383
BsiSI CCGG 1 cut(s) 416
BslI CCNNNNNNNGG 3 cut(s) 157, 635, 698
BsmAI GTCTC 3 cut(s) 166, 474, 774
BsnI GGCC 2 cut(s) 419, 598
Bso31I GGTCTC 2 cut(s) 166, 474
Bsp143I GATC 3 cut(s) 4, 153, 489
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 2 cut(s) 62, 555
BspANI GGCC 2 cut(s) 419, 598
BspCNI CTCAG 5 cut(s) 127, 367, 814, 826, 853
BspDI ATCGAT 1 cut(s) 383
BspFNI CGCG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 2 cut(s) 166, 474
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 4 cut(s) 355, 403, 592, 640
BssAI RCCGGY 1 cut(s) 415
BssMI GATC 3 cut(s) 4, 153, 489
Bst2UI CCWGG 3 cut(s) 678, 693, 750
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 8 cut(s) 135, 219, 375, 502, 801, 813, 840, 934
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 3 cut(s) 7, 156, 492
BstMAI GTCTC 3 cut(s) 166, 474, 774
BstMBI GATC 3 cut(s) 4, 153, 489
BstMWI GCNNNNNNNGC 3 cut(s) 98, 293, 437
BstNI CCWGG 3 cut(s) 678, 693, 750
BstSCI CCNGG 3 cut(s) 676, 691, 748
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 5 cut(s) 79, 283, 348, 404, 427
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 540
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 383
BsuRI GGCC 2 cut(s) 419, 598
BsuTUI ATCGAT 1 cut(s) 383
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 362, 633
Cac8I GCNNGC 1 cut(s) 285
CaiI CAGNNNCTG 2 cut(s) 361, 398
CciI TCATGA 1 cut(s) 496
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 383
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 497, 887
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 8 cut(s) 135, 219, 375, 502, 801, 813, 840, 934
DpnI GATC 3 cut(s) 6, 155, 491
DpnII GATC 3 cut(s) 4, 153, 489
EaeI YGGCCR 1 cut(s) 596
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco31I GGTCTC 2 cut(s) 166, 474
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 273
EcoRII CCWGG 3 cut(s) 676, 691, 748
EcoT22I ATGCAT 1 cut(s) 879
FaeI CATG 2 cut(s) 500, 890
FatI CATG 2 cut(s) 496, 886
FauNDI CATATG 2 cut(s) 705, 873
FbaI TGATCA 1 cut(s) 489
FblI GTMKAC 2 cut(s) 268, 529
Fnu4HI GCNGC 5 cut(s) 93, 297, 362, 393, 441
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 5 cut(s) 93, 297, 362, 393, 441
FspBI CTAG 4 cut(s) 300, 318, 516, 570
GluI GCNGC 5 cut(s) 93, 297, 362, 393, 441
GsaI CCCAGC 1 cut(s) 612
HaeIII GGCC 2 cut(s) 419, 598
HapII CCGG 1 cut(s) 416
Hin1II CATG 2 cut(s) 500, 890
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 6 cut(s) 118, 193, 199, 733, 796, 923
HpaII CCGG 1 cut(s) 416
HphI GGTGA 5 cut(s) 17, 356, 569, 860, 923
Hpy166II GTNNAC 3 cut(s) 269, 530, 581
Hpy188I TCNGA 8 cut(s) 112, 172, 198, 204, 279, 340, 744, 816
Hpy188III TCNNGA 5 cut(s) 43, 151, 405, 497, 773
Hpy8I GTNNAC 3 cut(s) 269, 530, 581
Hpy99I CGWCG 2 cut(s) 116, 273
HpyAV CCTTC 4 cut(s) 251, 554, 644, 770
HpyCH4V TGCA 4 cut(s) 392, 443, 716, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 293, 437
HpyF3I CTNAG 8 cut(s) 135, 219, 375, 502, 801, 813, 840, 934
Hsp92II CATG 2 cut(s) 500, 890
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 3 cut(s) 4, 153, 489
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 5 cut(s) 79, 283, 348, 404, 427
LweI GCATC 5 cut(s) 79, 270, 725, 735, 886
MaeI CTAG 4 cut(s) 300, 318, 516, 570
MaeIII GTNAC 1 cut(s) 23
MalI GATC 3 cut(s) 6, 155, 491
MboI GATC 3 cut(s) 4, 153, 489
MboII GAAGA 4 cut(s) 202, 426, 857, 902
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 598
MluCI AATT 6 cut(s) 37, 273, 311, 323, 538, 666
MluNI TGGCCA 1 cut(s) 598
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 2 cut(s) 135, 195
MnlI CCTC 4 cut(s) 257, 430, 457, 810
Mox20I TGGCCA 1 cut(s) 598
Mph1103I ATGCAT 1 cut(s) 879
MscI TGGCCA 1 cut(s) 598
MseI TTAA 5 cut(s) 141, 485, 536, 641, 943
MslI CAYNNNNRTG 2 cut(s) 462, 885
Msp20I TGGCCA 1 cut(s) 598
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 3 cut(s) 678, 693, 750
MunI CAATTG 1 cut(s) 311
MvaI CCWGG 3 cut(s) 678, 693, 750
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 3 cut(s) 98, 293, 437
NdeI CATATG 2 cut(s) 705, 873
NdeII GATC 3 cut(s) 4, 153, 489
NlaIII CATG 2 cut(s) 500, 890
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 879
PagI TCATGA 1 cut(s) 496
PfeI GAWTC 5 cut(s) 118, 199, 733, 796, 923
PflMI CCANNNNNTGG 2 cut(s) 157, 635
PkrI GCNGC 5 cut(s) 94, 298, 363, 394, 442
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 676, 691, 748
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 3 cut(s) 676, 691, 748
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 215
PstNI CAGNNNCTG 2 cut(s) 361, 398
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 2 cut(s) 462, 885
SalI GTCGAC 1 cut(s) 267
SaqAI TTAA 5 cut(s) 141, 485, 536, 641, 943
SatI GCNGC 5 cut(s) 93, 297, 362, 393, 441
Sau3AI GATC 3 cut(s) 4, 153, 489
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 3 cut(s) 678, 693, 750
SfaNI GCATC 5 cut(s) 79, 270, 725, 735, 886
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 462, 885
SmlI CTYRAG 5 cut(s) 755, 771, 846, 852, 927
SmoI CTYRAG 5 cut(s) 755, 771, 846, 852, 927
Sse9I AATT 6 cut(s) 37, 273, 311, 323, 538, 666
SsiI CCGC 2 cut(s) 62, 555
SspMI CTAG 4 cut(s) 300, 318, 516, 570
StyD4I CCNGG 3 cut(s) 676, 691, 748
TaqI TCGA 3 cut(s) 255, 268, 383
TasI AATT 6 cut(s) 37, 273, 311, 323, 538, 666
TfiI GAWTC 5 cut(s) 118, 199, 733, 796, 923
Tru1I TTAA 5 cut(s) 141, 485, 536, 641, 943
Tru9I TTAA 5 cut(s) 141, 485, 536, 641, 943
TscAI CASTG 2 cut(s) 362, 640
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 5 cut(s) 92, 296, 361, 392, 440
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 903
TspRI CASTG 2 cut(s) 362, 640
Van91I CCANNNNNTGG 2 cut(s) 157, 635
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 2 cut(s) 37, 273
XcmI CCANNNNNNNNNTGG 2 cut(s) 461, 591
XmiI GTMKAC 2 cut(s) 268, 529
XspI CTAG 4 cut(s) 300, 318, 516, 570
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.