Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Reverse (-)

23627208 .. 23629584

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G222000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAGAGAACAAGCCTGCGCAAATCAAGGACTTGCAGATTCTGAAAGCAAACAAAGATGATGAAAACAAGAAGCACCTGGCGCCCAAGAGGAGCTCCAACAAGGACAGGCACAAAAAGGTGGATGGTAGAGGCAGAAGAATACGGATGCCTGCCTTGTGTGCAGCTAGGGTTTTTCAATTGACCAGAGAATTGGGTCACAAGTCTGATGGGGAAACAATTCAGTGGCTGCTGCAGCAAGCTGAGCCATCAATTATAGCTGCCACTGGCTCTGGAACTGTACCTGCTTCAGCTCTTGCAGCTGCAGGGTCCTCTGTTTCTGAACAGGGGAGCTCTGTTTCCTCTGTTACTTCTGGGTTGCATACAAGGATGGAAGGACTAATAAGACCAAGTGTTGGGTCTGAAGGCAGTGCCAACTGGGCATTTCATATGGGCAGATCTAATGTGGCAAGTGGGGTTTGGCCCTTGCCCTTTCTCAGTGGGGTTAGGTCAGGTTTTGATCAAAATTCTGGTCAGGCAACAGTCAATTTTGGGAGTGAAAACTTGAACATCATGCAGCATAAGTTTGGGTTTCATGGGTTTGATGTTCCTGGCATGAATTTGGGGTCAATGGGTTTTCCCACAATTCTAAGTGGAAGCAACCAGCAAGTTCCAGGTTTAGAGCTTGGGCTCTCACAGGATGGTCATATTGGGGTTGTGAGTTCTCAAGCTTTGACCCAATTTCACCAGCACAAGGGGCAGAGGCCAGGTGGTGTAGCTTCCTTCAATCAGCAGCAGCAGCAGCCATCTGATACGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

268

Amino Acids

28.49

Weight (kDa)

9.51

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	82
AccB7I	CCANNNNNTGG	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	505, 598
AcuI	CTGAAG	2 cut(s)	273, 423
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	395, 733
AgsI	TTSAA	3 cut(s)	179, 547, 766
AjnI	CCWGG	4 cut(s)	78, 589, 652, 745
Alw21I	GWGCWC	2 cut(s)	98, 335
AlwNI	CAGNNNCTG	2 cut(s)	43, 229
AoxI	GGCC	2 cut(s)	461, 743
ApoI	RAATTY	2 cut(s)	505, 598
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	22, 85
AspS9I	GGNCC	2 cut(s)	309, 462
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	3 cut(s)	98, 335, 672
Bbv12I	GWGCWC	2 cut(s)	98, 335
BccI	CCATC	6 cut(s)	119, 203, 256, 364, 674, 793
BciT130I	CCWGG	4 cut(s)	80, 591, 654, 747
BclI	TGATCA	1 cut(s)	499
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	233, 303
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	437
BlpI	GCTNAGC	1 cut(s)	243
Bme1390I	CCNGG	4 cut(s)	80, 591, 654, 747
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	309, 462
BmiI	GGNNCC	2 cut(s)	84, 310
BmrFI	CCNGG	4 cut(s)	80, 591, 654, 747
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	427
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 733
Bse1I	ACTGG	2 cut(s)	271, 422
BseBI	CCWGG	4 cut(s)	80, 591, 654, 747
BseGI	GGATG	4 cut(s)	130, 153, 375, 685
BseLI	CCNNNNNNNGG	2 cut(s)	395, 733
BseMII	CTCAG	2 cut(s)	234, 490
BseNI	ACTGG	2 cut(s)	271, 422
BseRI	GAGGAG	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	463, 745
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	98, 335
BslI	CCNNNNNNNGG	2 cut(s)	395, 733
BsnI	GGCC	2 cut(s)	463, 745
Bsp1286I	GDGCHC	3 cut(s)	98, 335, 672
Bsp143I	GATC	2 cut(s)	437, 499
Bsp1720I	GCTNAGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	463, 745
BspCNI	CTCAG	2 cut(s)	235, 489
BspLI	GGNNCC	2 cut(s)	84, 310
BspMAI	CTGCAG	2 cut(s)	237, 307
BspMI	ACCTGC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	271, 422
BssMI	GATC	2 cut(s)	437, 499
BssNI	GRCGYC	1 cut(s)	83
Bst2UI	CCWGG	4 cut(s)	80, 591, 654, 747
Bst4CI	ACNGT	2 cut(s)	280, 523
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	18, 153, 240
BstDEI	CTNAG	3 cut(s)	243, 476, 629
BstF5I	GGATG	4 cut(s)	130, 153, 375, 685
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	22, 85
BstKTI	GATC	2 cut(s)	440, 502
BstMBI	GATC	2 cut(s)	437, 499
BstMWI	GCNNNNNNNGC	9 cut(s)	82, 161, 235, 244, 299, 419, 736, 778, 781
BstNI	CCWGG	4 cut(s)	80, 591, 654, 747
BstSCI	CCNGG	4 cut(s)	78, 589, 652, 745
BstSFI	CTRYAG	2 cut(s)	233, 303
BstX2I	RGATCY	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	463, 745
BtsCI	GGATG	4 cut(s)	130, 153, 375, 685
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	4 cut(s)	230, 264, 415, 484
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	18, 153, 240
CaiI	CAGNNNCTG	2 cut(s)	43, 229
CfoI	GCGC	2 cut(s)	22, 85
Cfr13I	GGNCC	2 cut(s)	309, 462
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	553, 575, 595
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	3 cut(s)	243, 476, 629
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	2 cut(s)	439, 501
DpnII	GATC	2 cut(s)	437, 499
Ecl136II	GAGCTC	2 cut(s)	96, 333
Eco24I	GRGCYC	3 cut(s)	98, 335, 672
Eco47I	GGWCC	1 cut(s)	309
Eco53kI	GAGCTC	2 cut(s)	96, 333
Eco57I	CTGAAG	2 cut(s)	273, 423
EcoICRI	GAGCTC	2 cut(s)	96, 333
EcoO109I	RGGNCCY	1 cut(s)	309
EcoRII	CCWGG	4 cut(s)	78, 589, 652, 745
EcoT38I	GRGCYC	3 cut(s)	98, 335, 672
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
FaeI	CATG	3 cut(s)	556, 578, 598
FaiI	YATR	9 cut(s)	257, 363, 429, 431, 554, 561, 576, 596, 687
FatI	CATG	3 cut(s)	552, 574, 594
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	499
FokI	GGATG	4 cut(s)	137, 160, 382, 692
FriOI	GRGCYC	3 cut(s)	98, 335, 672
FspBI	CTAG	1 cut(s)	168
FspI	TGCGCA	1 cut(s)	21
GlaI	GCGC	2 cut(s)	21, 84
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	463, 745
HhaI	GCGC	2 cut(s)	22, 85
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	556, 578, 598
Hin6I	GCGC	2 cut(s)	20, 83
HinP1I	GCGC	2 cut(s)	20, 83
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	716
Hpy188I	TCNGA	5 cut(s)	45, 208, 322, 403, 790
Hpy188III	TCNNGA	1 cut(s)	273
HpyAV	CCTTC	3 cut(s)	368, 398, 772
HpyCH4III	ACNGT	2 cut(s)	280, 523
HpyCH4V	TGCA	7 cut(s)	37, 164, 235, 299, 305, 361, 556
HpyF10VI	GCNNNNNNNGC	9 cut(s)	82, 161, 235, 244, 299, 419, 736, 778, 781
HpyF3I	CTNAG	3 cut(s)	243, 476, 629
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	556, 578, 598
HspAI	GCGC	2 cut(s)	20, 83
KasI	GGCGCC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	437, 499
LmnI	GCTCC	3 cut(s)	93, 101, 330
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	197, 346
MalI	GATC	2 cut(s)	439, 501
MboI	GATC	2 cut(s)	437, 499
MboII	GAAGA	1 cut(s)	150
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	3 cut(s)	98, 335, 672
MluCI	AATT	9 cut(s)	179, 191, 219, 252, 505, 526, 598, 624, 719
Mly113I	GGCGCC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	84, 125, 322, 352, 735
MroXI	GAANNNNTTC	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	302
MspR9I	CCNGG	4 cut(s)	80, 591, 654, 747
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	4 cut(s)	80, 591, 654, 747
MwoI	GCNNNNNNNGC	9 cut(s)	82, 161, 235, 244, 299, 419, 736, 778, 781
NarI	GGCGCC	1 cut(s)	83
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	2 cut(s)	437, 499
NlaIII	CATG	3 cut(s)	556, 578, 598
NlaIV	GGNNCC	2 cut(s)	84, 310
NmuCI	GTSAC	1 cut(s)	197
NsbI	TGCGCA	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	395
PluTI	GGCGCC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	309
Psp124BI	GAGCTC	2 cut(s)	98, 335
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	4 cut(s)	78, 589, 652, 745
PspGI	CCWGG	4 cut(s)	78, 589, 652, 745
PspN4I	GGNNCC	2 cut(s)	84, 310
PspPI	GGNCC	2 cut(s)	309, 462
PspPPI	RGGWCCY	1 cut(s)	309
PstI	CTGCAG	2 cut(s)	237, 307
PstNI	CAGNNNCTG	2 cut(s)	43, 229
PsuI	RGATCY	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SacI	GAGCTC	2 cut(s)	98, 335
Sau3AI	GATC	2 cut(s)	437, 499
Sau96I	GGNCC	2 cut(s)	309, 462
ScrFI	CCNGG	4 cut(s)	80, 591, 654, 747
SduI	GDGCHC	3 cut(s)	98, 335, 672
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	2 cut(s)	233, 303
SfoI	GGCGCC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	9 cut(s)	179, 191, 219, 252, 505, 526, 598, 624, 719
SspDI	GGCGCC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	2 cut(s)	98, 335
StyD4I	CCNGG	4 cut(s)	78, 589, 652, 745
TaaI	ACNGT	2 cut(s)	280, 523
TasI	AATT	9 cut(s)	179, 191, 219, 252, 505, 526, 598, 624, 719
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	4 cut(s)	230, 271, 415, 484
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	4 cut(s)	78, 416, 563, 611
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	4 cut(s)	230, 271, 415, 484
Van91I	CCANNNNNTGG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	2 cut(s)	505, 598
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.