pycom111g00660
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0007171
Physical Location & Seq
Reverse (-)
447447 .. 448418
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00660.1

Sequence Viewer

Length: 972 bp
ATGGATCCCAAGGGCTCAAAGCAGACACAAGACATACCCAGCTTCTTGAGCCTCCCCCCACAACCACAATCACAACCTCAGCAGCAGCAGCAGCAACCACAACAACCACCTCAACCCAACAACAACAACATGAGCGACAACAAACCTGCTGAAATCAAAGACTTCCAGATTGTAATCGCCGACAAAGATGAGTCGGGAAAGAAGCAGTTGGCGCCCAAGAGAAGCTCCAACAAAGACAGACACACTAAAGTCGAAGGCAGGGGAAGGAGGATACGGATGCCGGCCCTCTGCGCCGCCAGAATCTTTCAATTGACCAGAGAGCTGGGTCACAAATCCGATGGGGAAACAATCCAGTGGCTCCTCCAGCAGTCCGAGCCGTCGATTCTTGCCGCCACCGGGACCGGGACGATTCCGGCGTCGGCTTTGGCGGCGGCAGGGGGCTCTGTTTCGCAGCAGGGGACTTCGTTATCAGCTGGATTGCACCAAAAGATCGATGAATTGGGGGGGTCCAGTGGGGGTAGGACCGGTTGGGCAATGGTGGGCGGGAATTTGGGGAGACCCCATGTGGCAGGGGTGGGCGGGCTATGGCCCCCTGTCAGTAGCTTTGGGTTCCAGTCATCATCTGGTCCTCCATCAGCCACCACAAATCTGGGCACTGAGAGTTCAAATTACCTGCAAAAAATTGGGTTTCCTGGCTTTGACTTGCCTGTCTCTAACATGGGTCCGATGAGTTTTACTTCAATTTTGGGTGGGGGCAATCAGCAGCAGCAGCAGCAGCTTCCTGGGTTGGAACTTGGGTTGTCACAGGATGGACATATTGGGGTTCTGAACTCTCAGGCTTTGAGCCAGATTTACCAGCAGATGGGGCATGCTAGAGTGCACCAGCAGCCGCCGCAGCACCACCAACAGCAACACCACCACCAGCAGCAGCAACCGCCTTCCAAGGACGATTCTCAAGGATCCGGACAGTAG

Protein Analysis

324

Amino Acids

34.5

Weight (kDa)

9.02

Isoelectric Point (pI)

71.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 76 - 284 8.6e-27 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 707
Acc36I ACCTGC 2 cut(s) 154, 681
AccB1I GGYRCC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 862
AccIII TCCGGA 1 cut(s) 962
AciI CCGC 9 cut(s) 294, 390, 428, 431, 543, 579, 890, 893, 935
AclWI GGATC 3 cut(s) 12, 954, 967
AcsI RAATTY 1 cut(s) 547
AcyI GRCGYC 2 cut(s) 212, 416
AfiI CCNNNNNNNGG 3 cut(s) 396, 402, 862
AgeI ACCGGT 1 cut(s) 524
AgsI TTSAA 3 cut(s) 308, 666, 741
AjnI CCWGG 2 cut(s) 691, 781
AluBI AGCT 6 cut(s) 42, 225, 322, 473, 603, 778
AluI AGCT 6 cut(s) 42, 225, 322, 473, 603, 778
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 2 cut(s) 550, 715
Alw44I GTGCAC 1 cut(s) 878
AlwI GGATC 3 cut(s) 12, 954, 967
Aor13HI TCCGGA 1 cut(s) 962
AoxI GGCC 2 cut(s) 282, 587
ApaLI GTGCAC 1 cut(s) 878
ApoI RAATTY 1 cut(s) 547
AsiGI ACCGGT 1 cut(s) 524
AspLEI GCGC 2 cut(s) 214, 293
AspS9I GGNCC 7 cut(s) 283, 399, 507, 522, 588, 626, 722
AsuC2I CCSGG 2 cut(s) 397, 403
AvaII GGWCC 5 cut(s) 399, 507, 522, 626, 722
BaeGI GKGCMC 2 cut(s) 656, 882
BamHI GGATCC 2 cut(s) 4, 959
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 2 cut(s) 17, 443
Bbv12I GWGCWC 1 cut(s) 882
BbvCI CCTCAGC 1 cut(s) 78
BccI CCATC 4 cut(s) 332, 640, 803, 856
BceAI ACGGC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 693, 783
BciVI GTATCC 1 cut(s) 264
BcnI CCSGG 2 cut(s) 397, 403
BcoDI GTCTC 2 cut(s) 550, 715
BfaI CTAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 215
BfuAI ACCTGC 2 cut(s) 154, 681
BfuI GTATCC 1 cut(s) 264
Bme1390I CCNGG 4 cut(s) 397, 403, 693, 783
Bme18I GGWCC 5 cut(s) 399, 507, 522, 626, 722
BmgT120I GGNCC 7 cut(s) 283, 399, 507, 522, 588, 626, 722
BmiI GGNNCC 9 cut(s) 6, 213, 359, 400, 508, 590, 611, 723, 961
BmrFI CCNGG 4 cut(s) 397, 403, 693, 783
BmsI GCATC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 78
BpuEI CTTGAG 2 cut(s) 67, 939
BpuMI CCSGG 2 cut(s) 397, 403
Bsa29I ATCGAT 1 cut(s) 492
BsaBI GATNNNNATC 1 cut(s) 173
BsaHI GRCGYC 2 cut(s) 212, 416
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 3 cut(s) 9, 782, 942
BsaWI WCCGGW 2 cut(s) 524, 962
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 402, 862
Bse118I RCCGGY 2 cut(s) 280, 524
Bse1I ACTGG 3 cut(s) 352, 510, 613
Bse3DI GCAATG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 173
BseAI TCCGGA 1 cut(s) 962
BseBI CCWGG 2 cut(s) 693, 783
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 9, 782, 942
BseGI GGATG 2 cut(s) 282, 814
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 3 cut(s) 396, 402, 862
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 92, 648, 848
BseNI ACTGG 3 cut(s) 352, 510, 613
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 2 cut(s) 656, 882
BseYI CCCAGC 2 cut(s) 38, 322
BshFI GGCC 2 cut(s) 284, 589
BshNI GGYRCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 524
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 882
BsiSI CCGG 6 cut(s) 281, 396, 402, 413, 525, 963
BslFI GGGAC 3 cut(s) 412, 418, 472
BslI CCNNNNNNNGG 3 cut(s) 396, 402, 862
BsmAI GTCTC 2 cut(s) 550, 715
BsmFI GGGAC 3 cut(s) 412, 418, 472
BsnI GGCC 2 cut(s) 284, 589
Bso31I GGTCTC 1 cut(s) 550
Bsp1286I GDGCHC 4 cut(s) 17, 443, 656, 882
Bsp13I TCCGGA 1 cut(s) 962
Bsp143I GATC 3 cut(s) 4, 489, 959
BspACI CCGC 9 cut(s) 294, 390, 428, 431, 543, 579, 890, 893, 935
BspANI GGCC 2 cut(s) 284, 589
BspCNI CTCAG 3 cut(s) 91, 649, 847
BspDI ATCGAT 1 cut(s) 492
BspEI TCCGGA 1 cut(s) 962
BspLI GGNNCC 9 cut(s) 6, 213, 359, 400, 508, 590, 611, 723, 961
BspMI ACCTGC 2 cut(s) 154, 681
BspPI GGATC 3 cut(s) 12, 954, 967
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 2 cut(s) 280, 524
BsrI ACTGG 3 cut(s) 352, 510, 613
BssAI RCCGGY 2 cut(s) 280, 524
BssECI CCNNGG 3 cut(s) 9, 782, 942
BssMI GATC 3 cut(s) 4, 489, 959
BssNI GRCGYC 2 cut(s) 212, 416
BssT1I CCWWGG 2 cut(s) 9, 942
Bst2UI CCWGG 2 cut(s) 693, 783
Bst4CI ACNGT 1 cut(s) 969
BstACI GRCGYC 2 cut(s) 212, 416
BstC8I GCNNGC 3 cut(s) 282, 581, 870
BstDEI CTNAG 3 cut(s) 78, 657, 834
BstF5I GGATG 2 cut(s) 282, 814
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 293
BstKTI GATC 3 cut(s) 7, 492, 962
BstMAI GTCTC 2 cut(s) 550, 715
BstMBI GATC 3 cut(s) 4, 489, 959
BstNI CCWGG 2 cut(s) 693, 783
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 4 cut(s) 395, 401, 691, 781
BstSLI GKGCMC 2 cut(s) 656, 882
BstX2I RGATCY 2 cut(s) 4, 959
BstXI CCANNNNNNTGG 2 cut(s) 322, 649
BstYI RGATCY 2 cut(s) 4, 959
Bsu15I ATCGAT 1 cut(s) 492
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 284, 589
BsuTUI ATCGAT 1 cut(s) 492
BtsCI GGATG 2 cut(s) 282, 814
BtsIMutI CAGTG 3 cut(s) 359, 517, 654
BveI ACCTGC 2 cut(s) 154, 681
Cac8I GCNNGC 3 cut(s) 282, 581, 870
CfoI GCGC 2 cut(s) 214, 293
Cfr10I RCCGGY 2 cut(s) 280, 524
Cfr13I GGNCC 7 cut(s) 283, 399, 507, 522, 588, 626, 722
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 405
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 4 cut(s) 130, 563, 718, 869
DdeI CTNAG 3 cut(s) 78, 657, 834
DinI GGCGCC 1 cut(s) 213
DpnI GATC 3 cut(s) 6, 491, 961
DpnII GATC 3 cut(s) 4, 489, 959
DrdI GACNNNNNNGTC 1 cut(s) 707
DseDI GACNNNNNNGTC 1 cut(s) 707
Eco130I CCWWGG 2 cut(s) 9, 942
Eco24I GRGCYC 2 cut(s) 17, 443
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 5 cut(s) 399, 507, 522, 626, 722
EcoRII CCWGG 2 cut(s) 691, 781
EcoT14I CCWWGG 2 cut(s) 9, 942
EcoT38I GRGCYC 2 cut(s) 17, 443
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 9, 942
FaeI CATG 4 cut(s) 133, 566, 721, 872
FaiI YATR 7 cut(s) 35, 131, 564, 586, 719, 816, 870
FaqI GGGAC 3 cut(s) 412, 418, 472
FatI CATG 4 cut(s) 129, 562, 717, 868
FauI CCCGC 2 cut(s) 536, 572
FokI GGATG 2 cut(s) 289, 821
FriOI GRGCYC 2 cut(s) 17, 443
FspBI CTAG 1 cut(s) 873
GlaI GCGC 2 cut(s) 213, 292
GsaI CCCAGC 2 cut(s) 42, 326
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 2 cut(s) 284, 589
HapII CCGG 6 cut(s) 281, 396, 402, 413, 525, 963
HgaI GACGC 1 cut(s) 405
HhaI GCGC 2 cut(s) 214, 293
Hin1I GRCGYC 2 cut(s) 212, 416
Hin1II CATG 4 cut(s) 133, 566, 721, 872
Hin6I GCGC 2 cut(s) 212, 291
HinP1I GCGC 2 cut(s) 212, 291
HinfI GANTC 5 cut(s) 191, 300, 382, 409, 950
HpaII CCGG 6 cut(s) 281, 396, 402, 413, 525, 963
Hpy166II GTNNAC 1 cut(s) 880
Hpy188I TCNGA 4 cut(s) 337, 373, 726, 828
Hpy188III TCNNGA 4 cut(s) 46, 166, 195, 963
Hpy8I GTNNAC 1 cut(s) 880
Hpy99I CGWCG 2 cut(s) 382, 421
HpyAV CCTTC 3 cut(s) 248, 258, 948
HpyCH4III ACNGT 1 cut(s) 969
HpyCH4V TGCA 3 cut(s) 481, 676, 880
HpyF3I CTNAG 3 cut(s) 78, 657, 834
Hsp92I GRCGYC 2 cut(s) 212, 416
Hsp92II CATG 4 cut(s) 133, 566, 721, 872
HspAI GCGC 2 cut(s) 212, 291
KasI GGCGCC 1 cut(s) 211
Kpn2I TCCGGA 1 cut(s) 962
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 3 cut(s) 4, 489, 959
LmnI GCTCC 2 cut(s) 230, 363
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 873
MaeIII GTNAC 2 cut(s) 326, 801
MalI GATC 3 cut(s) 6, 491, 961
MboI GATC 3 cut(s) 4, 489, 959
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 2 cut(s) 4, 959
MhlI GDGCHC 4 cut(s) 17, 443, 656, 882
MluCI AATT 6 cut(s) 308, 497, 547, 667, 681, 741
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 252, 768
MnlI CCTC 7 cut(s) 62, 87, 120, 261, 296, 371, 639
MroI TCCGGA 1 cut(s) 962
MroNI GCCGGC 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 6 cut(s) 281, 396, 402, 413, 525, 963
MspR9I CCNGG 4 cut(s) 397, 403, 693, 783
MunI CAATTG 1 cut(s) 308
MvaI CCWGG 2 cut(s) 693, 783
NaeI GCCGGC 1 cut(s) 282
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 397, 403
NdeII GATC 3 cut(s) 4, 489, 959
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 4 cut(s) 133, 566, 721, 872
NlaIV GGNNCC 9 cut(s) 6, 213, 359, 400, 508, 590, 611, 723, 961
NmuCI GTSAC 2 cut(s) 326, 801
NspI RCATGY 1 cut(s) 872
PaeI GCATGC 1 cut(s) 872
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 282
PfeI GAWTC 4 cut(s) 300, 382, 409, 950
PflMI CCANNNNNTGG 1 cut(s) 862
PinAI ACCGGT 1 cut(s) 524
PleI GAGTC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 691, 781
PspFI CCCAGC 2 cut(s) 38, 322
PspGI CCWGG 2 cut(s) 691, 781
PspN4I GGNNCC 9 cut(s) 6, 213, 359, 400, 508, 590, 611, 723, 961
PspPI GGNCC 7 cut(s) 283, 399, 507, 522, 588, 626, 722
PsuI RGATCY 2 cut(s) 4, 959
PvuII CAGCTG 1 cut(s) 473
Sau3AI GATC 3 cut(s) 4, 489, 959
Sau96I GGNCC 7 cut(s) 283, 399, 507, 522, 588, 626, 722
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 4 cut(s) 397, 403, 693, 783
SduI GDGCHC 4 cut(s) 17, 443, 656, 882
SfaNI GCATC 1 cut(s) 267
SfoI GGCGCC 1 cut(s) 213
SinI GGWCC 5 cut(s) 399, 507, 522, 626, 722
SmlI CTYRAG 2 cut(s) 46, 954
SmoI CTYRAG 2 cut(s) 46, 954
SphI GCATGC 1 cut(s) 872
Sse9I AATT 6 cut(s) 308, 497, 547, 667, 681, 741
SsiI CCGC 9 cut(s) 294, 390, 428, 431, 543, 579, 890, 893, 935
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 1 cut(s) 873
StyD4I CCNGG 4 cut(s) 395, 401, 691, 781
StyI CCWWGG 2 cut(s) 9, 942
TaaI ACNGT 1 cut(s) 969
TaqI TCGA 3 cut(s) 252, 380, 492
TasI AATT 6 cut(s) 308, 497, 547, 667, 681, 741
TauI GCSGC 6 cut(s) 296, 392, 431, 434, 892, 895
TfiI GAWTC 4 cut(s) 300, 382, 409, 950
TscAI CASTG 3 cut(s) 359, 517, 661
TseFI GTSAC 2 cut(s) 326, 801
Tsp45I GTSAC 2 cut(s) 326, 801
TspDTI ATGAA 1 cut(s) 510
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 3 cut(s) 359, 517, 661
Van91I CCANNNNNTGG 1 cut(s) 862
VneI GTGCAC 1 cut(s) 878
VpaK11BI GGWCC 5 cut(s) 399, 507, 522, 626, 722
XapI RAATTY 1 cut(s) 547
XceI RCATGY 1 cut(s) 872
XcmI CCANNNNNNNNNTGG 2 cut(s) 620, 646
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.