Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Reverse (-)

580205 .. 581231

Gene Structure 1027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1008300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATCCCAAGGGCTCAAAGCAGACACAAGACATACCCAGCTTCTTGAGCCTTCCCCCACAATCACAACCACAACCTGAGCAGCAGCAGCAACCACAACAACAACCTCAACCCAACAACAACATGAGCGACAACAAACCTGCTGAAATCAAAGACTTCCAGATTGTAATCGCCGACAAAGATGAGTCGGGAAAGAAGCAGTTGGCGCCCAAGAGAAGCTCCAACAAAGACAGACACACTAAAGTCGAAGGCAGGGGAAGGAGGATACGGATGCCGGCCCTCTGCGCCGCCAGAATCTTTCAATTGACCAGAGAGTTGGGTCACAAATCCGATGGGGAAACAATCCAGTGGCTCCTCCAGCAGGCCGAGCCGTCGATTGTTGCCACCACCGGGACCGGGACGATTCCGGCGTCGGCTTTGGCGGCGGCAGGTGGCTCTGTTTCGCAACAGGGGACTTCTTTATCAGCTGGATTGCACCAAAAGATCGATGAATTGGGGGGGTCCAGTGGGGGTAGGACCAGTTGGGCAATGGTGGGCGGGAATTTGGGGAGACCCCATGTGGCAGGGGTGGGCGGGCTATGGCCCCCTGTCAGTAGCTTTGGGTTCCAGTCATCATCTGGTCCTCCATCGGCCACCACAAATCTGGGCACTGAGAGTTCAAATTACCTGCAAAAAATTGGGTTTCCTGGCTTTGACTTGCCTGTCTCTAACTTGGGTCCGATGAGTTTTACTTCAATTTTGGGTGGGGGCAATCAGCAGCAGCAGCAGCAGCTTCCTGGGTTGGAACTTGGGTTGTCACAGGATGGACATATTGGGGTTCTGAACTCTCAGGCTTTGAGCCAGATTTACCAGCAGATGGGGCATGCTAGAGTGCACCAGCAGCCGCCGCAGCACCACCACCAGCAACACCACCACCAGCAGCAGCAACCGCCTTCCAAGGACGATTCTCAAGGATCCGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

322

Amino Acids

34.31

Weight (kDa)

8.67

Isoelectric Point (pI)

68.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	74 - 282	1.4e-26	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	419
AasI	GACNNNNNNGTC	1 cut(s)	701
Acc36I	ACCTGC	3 cut(s)	148, 419, 675
AccB1I	GGYRCC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	856
AccIII	TCCGGA	1 cut(s)	956
AciI	CCGC	8 cut(s)	288, 422, 425, 537, 573, 884, 887, 929
AclWI	GGATC	3 cut(s)	12, 948, 961
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	2 cut(s)	206, 410
AfiI	CCNNNNNNNGG	4 cut(s)	361, 390, 396, 856
AgsI	TTSAA	3 cut(s)	302, 660, 735
AjnI	CCWGG	2 cut(s)	685, 775
AluBI	AGCT	5 cut(s)	42, 219, 467, 597, 772
AluI	AGCT	5 cut(s)	42, 219, 467, 597, 772
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	2 cut(s)	544, 709
Alw44I	GTGCAC	1 cut(s)	872
AlwI	GGATC	3 cut(s)	12, 948, 961
Aor13HI	TCCGGA	1 cut(s)	956
AoxI	GGCC	4 cut(s)	276, 363, 581, 630
ApaLI	GTGCAC	1 cut(s)	872
ApoI	RAATTY	1 cut(s)	541
AspLEI	GCGC	2 cut(s)	208, 287
AspS9I	GGNCC	7 cut(s)	277, 393, 501, 516, 582, 620, 716
AsuC2I	CCSGG	2 cut(s)	391, 397
AvaII	GGWCC	5 cut(s)	393, 501, 516, 620, 716
BaeGI	GKGCMC	2 cut(s)	650, 876
BamHI	GGATCC	2 cut(s)	4, 953
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	876
BccI	CCATC	4 cut(s)	326, 634, 797, 850
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	2 cut(s)	687, 777
BciVI	GTATCC	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	391, 397
BcoDI	GTCTC	2 cut(s)	544, 709
BfaI	CTAG	1 cut(s)	867
BfoI	RGCGCY	1 cut(s)	209
BfuAI	ACCTGC	3 cut(s)	148, 419, 675
BfuI	GTATCC	1 cut(s)	258
Bme1390I	CCNGG	4 cut(s)	391, 397, 687, 777
Bme18I	GGWCC	5 cut(s)	393, 501, 516, 620, 716
BmgT120I	GGNCC	7 cut(s)	277, 393, 501, 516, 582, 620, 716
BmiI	GGNNCC	9 cut(s)	6, 207, 353, 394, 502, 584, 605, 717, 955
BmrFI	CCNGG	4 cut(s)	391, 397, 687, 777
BmsI	GCATC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	67, 933
BpuMI	CCSGG	2 cut(s)	391, 397
Bsa29I	ATCGAT	1 cut(s)	486
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	206, 410
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	9, 776, 936
BsaWI	WCCGGW	1 cut(s)	956
Bsc4I	CCNNNNNNNGG	4 cut(s)	361, 390, 396, 856
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	4 cut(s)	346, 504, 519, 607
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	167
BseAI	TCCGGA	1 cut(s)	956
BseBI	CCWGG	2 cut(s)	687, 777
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	3 cut(s)	9, 776, 936
BseGI	GGATG	2 cut(s)	276, 808
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	4 cut(s)	361, 390, 396, 856
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	69, 642, 842
BseNI	ACTGG	4 cut(s)	346, 504, 519, 607
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	2 cut(s)	650, 876
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	4 cut(s)	278, 365, 583, 632
BshNI	GGYRCC	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	876
BsiSI	CCGG	5 cut(s)	275, 390, 396, 407, 957
BslFI	GGGAC	3 cut(s)	406, 412, 466
BslI	CCNNNNNNNGG	4 cut(s)	361, 390, 396, 856
BsmAI	GTCTC	2 cut(s)	544, 709
BsmFI	GGGAC	3 cut(s)	406, 412, 466
BsnI	GGCC	4 cut(s)	278, 365, 583, 632
Bso31I	GGTCTC	1 cut(s)	544
Bsp1286I	GDGCHC	3 cut(s)	17, 650, 876
Bsp13I	TCCGGA	1 cut(s)	956
Bsp143I	GATC	3 cut(s)	4, 483, 953
BspACI	CCGC	8 cut(s)	288, 422, 425, 537, 573, 884, 887, 929
BspANI	GGCC	4 cut(s)	278, 365, 583, 632
BspCNI	CTCAG	3 cut(s)	70, 643, 841
BspDI	ATCGAT	1 cut(s)	486
BspEI	TCCGGA	1 cut(s)	956
BspLI	GGNNCC	9 cut(s)	6, 207, 353, 394, 502, 584, 605, 717, 955
BspMI	ACCTGC	3 cut(s)	148, 419, 675
BspPI	GGATC	3 cut(s)	12, 948, 961
BspT107I	GGYRCC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	4 cut(s)	346, 504, 519, 607
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	9, 776, 936
BssMI	GATC	3 cut(s)	4, 483, 953
BssNI	GRCGYC	2 cut(s)	206, 410
BssT1I	CCWWGG	2 cut(s)	9, 936
Bst2UI	CCWGG	2 cut(s)	687, 777
Bst4CI	ACNGT	1 cut(s)	963
BstACI	GRCGYC	2 cut(s)	206, 410
BstC8I	GCNNGC	4 cut(s)	276, 363, 575, 864
BstDEI	CTNAG	3 cut(s)	78, 651, 828
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	276, 808
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	208, 287
BstKTI	GATC	3 cut(s)	7, 486, 956
BstMAI	GTCTC	2 cut(s)	544, 709
BstMBI	GATC	3 cut(s)	4, 483, 953
BstNI	CCWGG	2 cut(s)	687, 777
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	4 cut(s)	389, 395, 685, 775
BstSLI	GKGCMC	2 cut(s)	650, 876
BstX2I	RGATCY	2 cut(s)	4, 953
BstXI	CCANNNNNNTGG	2 cut(s)	316, 643
BstYI	RGATCY	2 cut(s)	4, 953
Bsu15I	ATCGAT	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	278, 365, 583, 632
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	276, 808
BtsIMutI	CAGTG	3 cut(s)	353, 511, 648
BveI	ACCTGC	3 cut(s)	148, 419, 675
Cac8I	GCNNGC	4 cut(s)	276, 363, 575, 864
CfoI	GCGC	2 cut(s)	208, 287
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	7 cut(s)	277, 393, 501, 516, 582, 620, 716
ClaI	ATCGAT	1 cut(s)	486
CseI	GACGC	1 cut(s)	399
CviAII	CATG	3 cut(s)	124, 557, 863
DdeI	CTNAG	3 cut(s)	78, 651, 828
DinI	GGCGCC	1 cut(s)	207
DpnI	GATC	3 cut(s)	6, 485, 955
DpnII	GATC	3 cut(s)	4, 483, 953
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	630
Eco130I	CCWWGG	2 cut(s)	9, 936
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	5 cut(s)	393, 501, 516, 620, 716
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	685, 775
EcoT14I	CCWWGG	2 cut(s)	9, 936
EcoT38I	GRGCYC	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	207
EheI	GGCGCC	1 cut(s)	207
ErhI	CCWWGG	2 cut(s)	9, 936
FaeI	CATG	3 cut(s)	127, 560, 866
FaiI	YATR	6 cut(s)	35, 125, 558, 580, 810, 864
FaqI	GGGAC	3 cut(s)	406, 412, 466
FatI	CATG	3 cut(s)	123, 556, 862
FauI	CCCGC	2 cut(s)	530, 566
FokI	GGATG	2 cut(s)	283, 815
FriOI	GRGCYC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	867
GlaI	GCGC	2 cut(s)	207, 286
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	278, 365, 583, 632
HapII	CCGG	5 cut(s)	275, 390, 396, 407, 957
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	2 cut(s)	208, 287
Hin1I	GRCGYC	2 cut(s)	206, 410
Hin1II	CATG	3 cut(s)	127, 560, 866
Hin6I	GCGC	2 cut(s)	206, 285
HinP1I	GCGC	2 cut(s)	206, 285
HinfI	GANTC	4 cut(s)	185, 294, 403, 944
HpaII	CCGG	5 cut(s)	275, 390, 396, 407, 957
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	3 cut(s)	331, 720, 822
Hpy188III	TCNNGA	4 cut(s)	46, 160, 189, 957
Hpy8I	GTNNAC	1 cut(s)	874
Hpy99I	CGWCG	2 cut(s)	376, 415
HpyAV	CCTTC	4 cut(s)	62, 242, 252, 942
HpyCH4III	ACNGT	1 cut(s)	963
HpyCH4V	TGCA	3 cut(s)	475, 670, 874
HpyF3I	CTNAG	3 cut(s)	78, 651, 828
Hsp92I	GRCGYC	2 cut(s)	206, 410
Hsp92II	CATG	3 cut(s)	127, 560, 866
HspAI	GCGC	2 cut(s)	206, 285
KasI	GGCGCC	1 cut(s)	205
Kpn2I	TCCGGA	1 cut(s)	956
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	4, 483, 953
LmnI	GCTCC	2 cut(s)	224, 357
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	867
MaeIII	GTNAC	2 cut(s)	320, 795
MalI	GATC	3 cut(s)	6, 485, 955
MboI	GATC	3 cut(s)	4, 483, 953
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	2 cut(s)	4, 953
MhlI	GDGCHC	3 cut(s)	17, 650, 876
MluCI	AATT	6 cut(s)	302, 491, 541, 661, 675, 735
Mly113I	GGCGCC	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	246, 762
MnlI	CCTC	5 cut(s)	117, 255, 290, 365, 633
MroI	TCCGGA	1 cut(s)	956
MroNI	GCCGGC	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	5 cut(s)	275, 390, 396, 407, 957
MspR9I	CCNGG	4 cut(s)	391, 397, 687, 777
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	687, 777
NaeI	GCCGGC	1 cut(s)	276
NarI	GGCGCC	1 cut(s)	206
NciI	CCSGG	2 cut(s)	391, 397
NdeII	GATC	3 cut(s)	4, 483, 953
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	3 cut(s)	127, 560, 866
NlaIV	GGNNCC	9 cut(s)	6, 207, 353, 394, 502, 584, 605, 717, 955
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	320, 795
NspI	RCATGY	1 cut(s)	866
PaeI	GCATGC	1 cut(s)	866
PaqCI	CACCTGC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	294, 403, 944
PflMI	CCANNNNNTGG	1 cut(s)	856
PleI	GAGTC	1 cut(s)	193
PluTI	GGCGCC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	685, 775
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	685, 775
PspN4I	GGNNCC	9 cut(s)	6, 207, 353, 394, 502, 584, 605, 717, 955
PspPI	GGNCC	7 cut(s)	277, 393, 501, 516, 582, 620, 716
PsuI	RGATCY	2 cut(s)	4, 953
PvuII	CAGCTG	1 cut(s)	467
Sau3AI	GATC	3 cut(s)	4, 483, 953
Sau96I	GGNCC	7 cut(s)	277, 393, 501, 516, 582, 620, 716
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	4 cut(s)	391, 397, 687, 777
SduI	GDGCHC	3 cut(s)	17, 650, 876
SfaNI	GCATC	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	207
SinI	GGWCC	5 cut(s)	393, 501, 516, 620, 716
SmlI	CTYRAG	2 cut(s)	46, 948
SmoI	CTYRAG	2 cut(s)	46, 948
SphI	GCATGC	1 cut(s)	866
Sse9I	AATT	6 cut(s)	302, 491, 541, 661, 675, 735
SsiI	CCGC	8 cut(s)	288, 422, 425, 537, 573, 884, 887, 929
SspDI	GGCGCC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	867
StyD4I	CCNGG	4 cut(s)	389, 395, 685, 775
StyI	CCWWGG	2 cut(s)	9, 936
TaaI	ACNGT	1 cut(s)	963
TaqI	TCGA	3 cut(s)	246, 374, 486
TasI	AATT	6 cut(s)	302, 491, 541, 661, 675, 735
TauI	GCSGC	5 cut(s)	290, 425, 428, 886, 889
TfiI	GAWTC	3 cut(s)	294, 403, 944
TscAI	CASTG	3 cut(s)	353, 511, 655
TseFI	GTSAC	2 cut(s)	320, 795
Tsp45I	GTSAC	2 cut(s)	320, 795
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	3 cut(s)	353, 511, 655
Van91I	CCANNNNNTGG	1 cut(s)	856
VneI	GTGCAC	1 cut(s)	872
VpaK11BI	GGWCC	5 cut(s)	393, 501, 516, 620, 716
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	866
XcmI	CCANNNNNNNNNTGG	3 cut(s)	526, 614, 640
XspI	CTAG	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.