Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Forward (+)

82403094 .. 82406924

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G054780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAGTGAGAACAACAACAACAGCAGCAACCACAACAACAACAACAACGTTGTCAAACCGGCGGAGATCAAAGACTTCCAGATTGCGATTGCGGACAAAGACGAAACCAAGAAGCAGTTGGCGCCCAAACGTAGCTCAAACAAAGACAGACACACAAAGGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCGGCTCTTTGCGCCGCGAGAATCTTCCAATTGACTCGAGAATTGGGCCACAAATCGGACGGAGAGACAATCCAATGGCTGCTGCACCAGGCGGAGCCGTCGATACTTGCCGCCACCGGCACGGGGACGATCCCAGCGTCGGCTCTGGCGGCGGCAGGCGGGTCGGTGTCGCAGCAGGGGACTTCTCTATCAGCTGGTCTGCACCAAAAGATAGATGAATTAGGAGGGGGAGGGTCCAGTGGAGGTAGGACCAGTTGGGCTATGGTGGGAGGGAATTTAGGGAGGCCCCATGTGGCTGCAGCAACTGGGCTATGGCCCCCTGCTGGGTTTGGTTTTTCTTCACAGTCATCTTCATCTGGTCCATCTACTACAAATCTGGGAGGGACTGAGAGCAGCTCAAATTACTTGCAAAAGATTGGGTTTCCTGGGGGGTTTGACTTGCCAGTCACCAACATGGGTCCTATGAGCTTCACTTCAATTCTGGGTGGGGGAAGTCAACAGCTGCCTGGTTTGGAACTTGGGTTGTCACAAGATGGCCATCTTGGGGTTTTGAACTCTCAGGCTGCTTTGAACCAGATTTACCAGCAGATGGGTCATGCTAGAGTGCATCACCAGCAGCAACACCCGCAGCAGCACCAGCACCAACACCAACACCAGCAAGCTCCGTCTTCTAAGGATGATTCTCAAGGCTCAGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

296

Amino Acids

31.14

Weight (kDa)

9.07

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	46 - 281	5e-26	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccII	CGCG	1 cut(s)	206
AciI	CCGC	9 cut(s)	62, 92, 204, 281, 300, 338, 341, 348, 815
AclI	AACGTT	1 cut(s)	48
AclWI	GGATC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	724
AcsI	RAATTY	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	122
AfiI	CCNNNNNNNGG	7 cut(s)	244, 312, 328, 512, 513, 733, 778
AgsI	TTSAA	3 cut(s)	666, 742, 760
AjnI	CCWGG	3 cut(s)	276, 613, 694
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	6 cut(s)	135, 383, 585, 657, 691, 851
AluI	AGCT	6 cut(s)	135, 383, 585, 657, 691, 851
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	4 cut(s)	235, 473, 503, 724
ApoI	RAATTY	1 cut(s)	463
AspLEI	GCGC	2 cut(s)	124, 203
AspS9I	GGNCC	7 cut(s)	235, 423, 438, 474, 504, 548, 647
AsuHPI	GGTGA	2 cut(s)	628, 791
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	4 cut(s)	423, 438, 548, 647
BalI	TGGCCA	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	849
BccI	CCATC	4 cut(s)	559, 716, 735, 772
BceAI	ACGGC	1 cut(s)	271
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciT130I	CCWGG	3 cut(s)	278, 615, 696
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	125
Bme1390I	CCNGG	3 cut(s)	278, 615, 696
Bme18I	GGWCC	4 cut(s)	423, 438, 548, 647
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	7 cut(s)	235, 423, 438, 474, 504, 548, 647
BmiI	GGNNCC	6 cut(s)	123, 285, 424, 476, 506, 648
BmrFI	CCNGG	3 cut(s)	278, 615, 696
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	177, 805
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	849
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
Bpu10I	CCTNAGC	1 cut(s)	880
BpuEI	CTTGAG	1 cut(s)	858
BsaBI	GATNNNNATC	1 cut(s)	726
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	7 cut(s)	244, 312, 328, 512, 513, 733, 778
Bse118I	RCCGGY	3 cut(s)	58, 190, 305
Bse1I	ACTGG	4 cut(s)	426, 441, 499, 632
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	3 cut(s)	278, 615, 696
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	2 cut(s)	192, 871
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	7 cut(s)	244, 312, 328, 512, 513, 733, 778
BseMII	CTCAG	2 cut(s)	567, 761
BseNI	ACTGG	4 cut(s)	426, 441, 499, 632
BseYI	CCCAGC	2 cut(s)	322, 512
BsgI	GTGCAG	2 cut(s)	257, 374
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	4 cut(s)	237, 475, 505, 726
BshNI	GGYRCC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	59, 191, 306
BslFI	GGGAC	3 cut(s)	328, 382, 586
BslI	CCNNNNNNNGG	7 cut(s)	244, 312, 328, 512, 513, 733, 778
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	3 cut(s)	328, 382, 586
BsnI	GGCC	4 cut(s)	237, 475, 505, 726
BsoBI	CYCGRG	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	66, 318
BspACI	CCGC	9 cut(s)	62, 92, 204, 281, 300, 338, 341, 348, 815
BspANI	GGCC	4 cut(s)	237, 475, 505, 726
BspCNI	CTCAG	2 cut(s)	568, 760
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	6 cut(s)	123, 285, 424, 476, 506, 648
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	121
BsrFI	RCCGGY	3 cut(s)	58, 190, 305
BsrI	ACTGG	4 cut(s)	426, 441, 499, 632
BssAI	RCCGGY	3 cut(s)	58, 190, 305
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	2 cut(s)	66, 318
BssNI	GRCGYC	1 cut(s)	122
Bst2UI	CCWGG	3 cut(s)	278, 615, 696
Bst4CI	ACNGT	2 cut(s)	534, 888
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	192, 346, 849
BstDEI	CTNAG	4 cut(s)	576, 747, 861, 880
BstF5I	GGATG	2 cut(s)	192, 871
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	124, 203
BstKTI	GATC	2 cut(s)	69, 321
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	66, 318
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 200, 338, 802, 814, 826
BstNI	CCWGG	3 cut(s)	278, 615, 696
BstSCI	CCNGG	3 cut(s)	276, 613, 694
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	849
BsuRI	GGCC	4 cut(s)	237, 475, 505, 726
BtsCI	GGATG	2 cut(s)	192, 871
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	3 cut(s)	192, 346, 849
CaiI	CAGNNNCTG	1 cut(s)	494
CfoI	GCGC	2 cut(s)	124, 203
Cfr10I	RCCGGY	3 cut(s)	58, 190, 305
Cfr13I	GGNCC	7 cut(s)	235, 423, 438, 474, 504, 548, 647
CseI	GACGC	1 cut(s)	315
CviAII	CATG	3 cut(s)	479, 643, 785
DdeI	CTNAG	4 cut(s)	576, 747, 861, 880
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	2 cut(s)	68, 320
DpnII	GATC	2 cut(s)	66, 318
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	724
EciI	GGCGGA	2 cut(s)	77, 296
Eco47I	GGWCC	4 cut(s)	423, 438, 548, 647
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	2 cut(s)	474, 647
EcoRII	CCWGG	3 cut(s)	276, 613, 694
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
FaeI	CATG	3 cut(s)	482, 646, 788
FaiI	YATR	6 cut(s)	452, 480, 502, 644, 653, 786
FaqI	GGGAC	3 cut(s)	328, 382, 586
FatI	CATG	3 cut(s)	478, 642, 784
FauI	CCCGC	2 cut(s)	341, 822
FokI	GGATG	2 cut(s)	199, 878
FspBI	CTAG	1 cut(s)	789
GlaI	GCGC	2 cut(s)	123, 202
GsaI	CCCAGC	2 cut(s)	326, 516
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	4 cut(s)	237, 475, 505, 726
HapII	CCGG	3 cut(s)	59, 191, 306
HgaI	GACGC	1 cut(s)	315
HhaI	GCGC	2 cut(s)	124, 203
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	482, 646, 788
Hin6I	GCGC	2 cut(s)	122, 201
HinP1I	GCGC	2 cut(s)	122, 201
HincII	GTYRAC	1 cut(s)	686
HindII	GTYRAC	1 cut(s)	686
HinfI	GANTC	3 cut(s)	210, 223, 869
HpaII	CCGG	3 cut(s)	59, 191, 306
HphI	GGTGA	2 cut(s)	628, 791
Hpy166II	GTNNAC	1 cut(s)	686
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	79, 227, 882
Hpy8I	GTNNAC	1 cut(s)	686
Hpy99I	CGWCG	2 cut(s)	292, 331
HpyAV	CCTTC	2 cut(s)	158, 171
HpyCH4III	ACNGT	2 cut(s)	534, 888
HpyCH4IV	ACGT	2 cut(s)	48, 130
HpyCH4V	TGCA	5 cut(s)	274, 391, 488, 598, 796
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 200, 338, 802, 814, 826
HpyF3I	CTNAG	4 cut(s)	576, 747, 861, 880
HpySE526I	ACGT	2 cut(s)	48, 130
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	482, 646, 788
HspAI	GCGC	2 cut(s)	122, 201
KasI	GGCGCC	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	190
KroNI	GCCGGC	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	66, 318
LmnI	GCTCC	2 cut(s)	283, 856
LweI	GCATC	2 cut(s)	177, 805
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	48, 130
MaeIII	GTNAC	2 cut(s)	634, 714
MalI	GATC	2 cut(s)	68, 320
MboI	GATC	2 cut(s)	66, 318
MboII	GAAGA	5 cut(s)	186, 205, 519, 531, 849
MfeI	CAATTG	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	6 cut(s)	218, 230, 407, 463, 589, 666
MluNI	TGGCCA	1 cut(s)	726
Mly113I	GGCGCC	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	164, 407, 413, 425, 452, 465, 563
Mox20I	TGGCCA	1 cut(s)	726
MroNI	GCCGGC	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	726
MslI	CAYNNNNRTG	2 cut(s)	158, 641
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	2 cut(s)	383, 691
MspI	CCGG	3 cut(s)	59, 191, 306
MspR9I	CCNGG	3 cut(s)	278, 615, 696
MunI	CAATTG	1 cut(s)	218
MvaI	CCWGG	3 cut(s)	278, 615, 696
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	6 cut(s)	121, 200, 338, 802, 814, 826
NaeI	GCCGGC	1 cut(s)	192
NarI	GGCGCC	1 cut(s)	122
NdeII	GATC	2 cut(s)	66, 318
NgoMIV	GCCGGC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	482, 646, 788
NlaIV	GGNNCC	6 cut(s)	123, 285, 424, 476, 506, 648
NmuCI	GTSAC	2 cut(s)	634, 714
OliI	CACNNNNGTG	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	210, 869
PflMI	CCANNNNNTGG	1 cut(s)	778
PleI	GAGTC	1 cut(s)	217
PluTI	GGCGCC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	647
Psp1406I	AACGTT	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	3 cut(s)	276, 613, 694
PspFI	CCCAGC	2 cut(s)	322, 512
PspGI	CCWGG	3 cut(s)	276, 613, 694
PspN4I	GGNNCC	6 cut(s)	123, 285, 424, 476, 506, 648
PspPI	GGNCC	7 cut(s)	235, 423, 438, 474, 504, 548, 647
PspPPI	RGGWCCY	1 cut(s)	647
PsrI	GAACNNNNNNTAC	2 cut(s)	752, 784
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	494
PvuII	CAGCTG	2 cut(s)	383, 691
RseI	CAYNNNNRTG	2 cut(s)	158, 641
Sau3AI	GATC	2 cut(s)	66, 318
Sau96I	GGNCC	7 cut(s)	235, 423, 438, 474, 504, 548, 647
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	3 cut(s)	278, 615, 696
SfaNI	GCATC	2 cut(s)	177, 805
SfcI	CTRYAG	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	4 cut(s)	423, 438, 548, 647
SlaI	CTCGAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	158, 641
SmlI	CTYRAG	2 cut(s)	225, 873
SmoI	CTYRAG	2 cut(s)	225, 873
Sse9I	AATT	6 cut(s)	218, 230, 407, 463, 589, 666
SsiI	CCGC	9 cut(s)	62, 92, 204, 281, 300, 338, 341, 348, 815
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	3 cut(s)	276, 613, 694
TaaI	ACNGT	2 cut(s)	534, 888
TaiI	ACGT	2 cut(s)	51, 133
TaqI	TCGA	2 cut(s)	226, 290
TasI	AATT	6 cut(s)	218, 230, 407, 463, 589, 666
TauI	GCSGC	4 cut(s)	206, 302, 341, 344
TfiI	GAWTC	2 cut(s)	210, 869
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	634, 714
Tsp45I	GTSAC	2 cut(s)	634, 714
TspDTI	ATGAA	2 cut(s)	420, 531
TspGWI	ACGGA	2 cut(s)	264, 843
TspRI	CASTG	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	778
VpaK11BI	GGWCC	4 cut(s)	423, 438, 548, 647
XapI	RAATTY	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	2 cut(s)	115, 448
XhoI	CTCGAG	1 cut(s)	225
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.