RchiOBHm_Chr2g0175971
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007171
Physical Location & Seq
Forward (+)
87957472 .. 87961166
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54300

Sequence Viewer

Length: 1008 bp
ATGGATCCCAAAGCCTCAAAGCAGCCTCAGGAGATACCCAGCTTCTTGAGCCTGCCACAACCTCAGCAGCAACAACACCACCACCAACAACATCATCATCAGCAACAGCCCAACACCATGAGTGAGAACAACAACAACAGCAGCAACCACAACAACAACAACAACGTTGTCAAACCGGCGGAGATCAAAGACTTCCAGATTGCGATTGCGGACAAAGACGAAACCAAGAAGCAGTTGGCGCCCAAACGTAGCTCAAACAAAGACAGACACACAAAGGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCGGCTCTTTGCGCCGCGAGAATCTTCCAATTGACTCGAGAATTGGGCCACAAATCGGACGGAGAGACAATCCAATGGCTGCTGCACCAGGCGGAGCCGTCGATACTTGCCGCCACCGGCACGGGGACGATCCCAGCGTCGGCTCTGGCGGCGGCAGGCGGGTCGGTGTCGCAGCAGGGGACTTCTCTATCAGCTGGTCTGCACCAAAAGATAGATGAATTAGGAGGGGGAGGGTCCAGTGGAGGTAGGACCAGTTGGGCTATGGTGGGAGGGAATTTAGGGAGGCCCCATGTGGCTGCAGCAACTGGGCTATGGCCCCCTGCTGGGTTTGGTTTTTCTTCACAGTCATCTTCATCTGGTCCATCTACTACAAATCTGGGAGGGACTGAGAGCAGCTCAAATTACTTGCAAAAGATTGGGTTTCCTGGGGGGTTTGACTTGCCAGTCACCAACATGGGTCCTATGAGCTTCACTTCAATTCTGGGTGGGGGAAGTCAACAGCTGCCTGGTTTGGAACTTGGGTTGTCACAAGATGGCCATCTTGGGGTTTTGAACTCTCAGGCTGCTTTGAACCAGATTTACCAGCAGATGGGTCATGCTAGAGTGCATCACCAGCAGCAACACCCGCAGCAGCACCAGCACCAACACCAGCACCAGCAAGCTCCGTCTTCTAAGGATGATTCTCAAGGCTCAGGACAGTAG

Protein Analysis

335

Amino Acids

35.74

Weight (kDa)

9.02

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 85 - 317 6e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 895
AccII CGCG 1 cut(s) 323
AciI CCGC 9 cut(s) 179, 209, 321, 398, 417, 455, 458, 465, 932
AclI AACGTT 1 cut(s) 165
AclWI GGATC 2 cut(s) 12, 430
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 1 cut(s) 580
AcyI GRCGYC 1 cut(s) 239
AfiI CCNNNNNNNGG 7 cut(s) 361, 429, 445, 629, 630, 850, 895
AgsI TTSAA 3 cut(s) 783, 859, 877
AjnI CCWGG 3 cut(s) 393, 730, 811
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 7 cut(s) 42, 252, 500, 702, 774, 808, 968
AluI AGCT 7 cut(s) 42, 252, 500, 702, 774, 808, 968
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 12, 430
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 4 cut(s) 352, 590, 620, 841
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 2 cut(s) 241, 320
AspS9I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
AsuHPI GGTGA 2 cut(s) 745, 908
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 4 cut(s) 540, 555, 665, 764
AxyI CCTNAGG 1 cut(s) 27
BalI TGGCCA 1 cut(s) 843
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 966
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 4 cut(s) 676, 833, 852, 889
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BciT130I CCWGG 3 cut(s) 395, 732, 813
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 242
Bme1390I CCNGG 3 cut(s) 395, 732, 813
Bme18I GGWCC 4 cut(s) 540, 555, 665, 764
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
BmiI GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
BmrFI CCNGG 3 cut(s) 395, 732, 813
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 2 cut(s) 294, 922
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 966
BplI GAGNNNNNCTC 2 cut(s) 686, 718
Bpu10I CCTNAGC 2 cut(s) 63, 997
BpuEI CTTGAG 2 cut(s) 67, 975
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 731
Bsc4I CCNNNNNNNGG 7 cut(s) 361, 429, 445, 629, 630, 850, 895
Bse118I RCCGGY 3 cut(s) 175, 307, 422
Bse1I ACTGG 4 cut(s) 543, 558, 616, 749
Bse21I CCTNAGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 3 cut(s) 395, 732, 813
BseDI CCNNGG 1 cut(s) 731
BseGI GGATG 2 cut(s) 309, 988
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 7 cut(s) 361, 429, 445, 629, 630, 850, 895
BseMII CTCAG 4 cut(s) 41, 77, 684, 878
BseNI ACTGG 4 cut(s) 543, 558, 616, 749
BseYI CCCAGC 3 cut(s) 38, 439, 629
BsgI GTGCAG 2 cut(s) 374, 491
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 4 cut(s) 354, 592, 622, 843
BshNI GGYRCC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 3 cut(s) 176, 308, 423
BslFI GGGAC 3 cut(s) 445, 499, 703
BslI CCNNNNNNNGG 7 cut(s) 361, 429, 445, 629, 630, 850, 895
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 3 cut(s) 445, 499, 703
BsnI GGCC 4 cut(s) 354, 592, 622, 843
BsoBI CYCGRG 1 cut(s) 342
Bsp143I GATC 3 cut(s) 4, 183, 435
BspACI CCGC 9 cut(s) 179, 209, 321, 398, 417, 455, 458, 465, 932
BspANI GGCC 4 cut(s) 354, 592, 622, 843
BspCNI CTCAG 4 cut(s) 40, 76, 685, 877
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 2 cut(s) 12, 430
BspT107I GGYRCC 1 cut(s) 238
BsrFI RCCGGY 3 cut(s) 175, 307, 422
BsrI ACTGG 4 cut(s) 543, 558, 616, 749
BssAI RCCGGY 3 cut(s) 175, 307, 422
BssECI CCNNGG 1 cut(s) 731
BssMI GATC 3 cut(s) 4, 183, 435
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 395, 732, 813
Bst4CI ACNGT 2 cut(s) 651, 1005
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 4 cut(s) 53, 309, 463, 966
BstDEI CTNAG 6 cut(s) 27, 63, 693, 864, 978, 997
BstF5I GGATG 2 cut(s) 309, 988
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 2 cut(s) 241, 320
BstKTI GATC 3 cut(s) 7, 186, 438
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 3 cut(s) 4, 183, 435
BstMWI GCNNNNNNNGC 7 cut(s) 48, 238, 317, 455, 919, 931, 943
BstNI CCWGG 3 cut(s) 395, 732, 813
BstSCI CCNGG 3 cut(s) 393, 730, 811
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 354, 592, 622, 843
BtsCI GGATG 2 cut(s) 309, 988
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 53, 309, 463, 966
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 2 cut(s) 241, 320
Cfr10I RCCGGY 3 cut(s) 175, 307, 422
Cfr13I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
CseI GACGC 1 cut(s) 432
CviAII CATG 4 cut(s) 118, 596, 760, 902
DdeI CTNAG 6 cut(s) 27, 63, 693, 864, 978, 997
DinI GGCGCC 1 cut(s) 240
DpnI GATC 3 cut(s) 6, 185, 437
DpnII GATC 3 cut(s) 4, 183, 435
DrdI GACNNNNNNGTC 1 cut(s) 749
DseDI GACNNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 1 cut(s) 841
EciI GGCGGA 2 cut(s) 194, 413
Eco47I GGWCC 4 cut(s) 540, 555, 665, 764
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 2 cut(s) 591, 764
EcoRII CCWGG 3 cut(s) 393, 730, 811
EgeI GGCGCC 1 cut(s) 240
EheI GGCGCC 1 cut(s) 240
FaeI CATG 4 cut(s) 121, 599, 763, 905
FaiI YATR 7 cut(s) 119, 569, 597, 619, 761, 770, 903
FaqI GGGAC 3 cut(s) 445, 499, 703
FatI CATG 4 cut(s) 117, 595, 759, 901
FauI CCCGC 2 cut(s) 458, 939
FokI GGATG 2 cut(s) 316, 995
FspBI CTAG 1 cut(s) 906
GlaI GCGC 2 cut(s) 240, 319
GsaI CCCAGC 3 cut(s) 42, 443, 633
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 4 cut(s) 354, 592, 622, 843
HapII CCGG 3 cut(s) 176, 308, 423
HgaI GACGC 1 cut(s) 432
HhaI GCGC 2 cut(s) 241, 320
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 4 cut(s) 121, 599, 763, 905
Hin6I GCGC 2 cut(s) 239, 318
HinP1I GCGC 2 cut(s) 239, 318
HincII GTYRAC 1 cut(s) 803
HindII GTYRAC 1 cut(s) 803
HinfI GANTC 3 cut(s) 327, 340, 986
HpaII CCGG 3 cut(s) 176, 308, 423
HphI GGTGA 2 cut(s) 745, 908
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 5 cut(s) 29, 46, 196, 344, 999
Hpy8I GTNNAC 1 cut(s) 803
Hpy99I CGWCG 2 cut(s) 409, 448
HpyAV CCTTC 2 cut(s) 275, 288
HpyCH4III ACNGT 2 cut(s) 651, 1005
HpyCH4IV ACGT 2 cut(s) 165, 247
HpyCH4V TGCA 5 cut(s) 391, 508, 605, 715, 913
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 238, 317, 455, 919, 931, 943
HpyF3I CTNAG 6 cut(s) 27, 63, 693, 864, 978, 997
HpySE526I ACGT 2 cut(s) 165, 247
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 4 cut(s) 121, 599, 763, 905
HspAI GCGC 2 cut(s) 239, 318
KasI GGCGCC 1 cut(s) 238
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 4, 183, 435
LmnI GCTCC 2 cut(s) 400, 973
LweI GCATC 2 cut(s) 294, 922
MaeI CTAG 1 cut(s) 906
MaeII ACGT 2 cut(s) 165, 247
MaeIII GTNAC 2 cut(s) 751, 831
MalI GATC 3 cut(s) 6, 185, 437
MboI GATC 3 cut(s) 4, 183, 435
MboII GAAGA 5 cut(s) 303, 322, 636, 648, 966
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 6 cut(s) 335, 347, 524, 580, 706, 783
MluNI TGGCCA 1 cut(s) 843
Mly113I GGCGCC 1 cut(s) 239
MlyI GAGTC 1 cut(s) 334
Mox20I TGGCCA 1 cut(s) 843
MroNI GCCGGC 1 cut(s) 307
MscI TGGCCA 1 cut(s) 843
MslI CAYNNNNRTG 2 cut(s) 275, 758
Msp20I TGGCCA 1 cut(s) 843
MspA1I CMGCKG 2 cut(s) 500, 808
MspI CCGG 3 cut(s) 176, 308, 423
MspR9I CCNGG 3 cut(s) 395, 732, 813
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 3 cut(s) 395, 732, 813
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 7 cut(s) 48, 238, 317, 455, 919, 931, 943
NaeI GCCGGC 1 cut(s) 309
NarI GGCGCC 1 cut(s) 239
NdeII GATC 3 cut(s) 4, 183, 435
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 4 cut(s) 121, 599, 763, 905
NlaIV GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
NmuCI GTSAC 2 cut(s) 751, 831
OliI CACNNNNGTG 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 327, 986
PflMI CCANNNNNTGG 1 cut(s) 895
PleI GAGTC 1 cut(s) 334
PluTI GGCGCC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 764
Psp1406I AACGTT 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 393, 730, 811
PspFI CCCAGC 3 cut(s) 38, 439, 629
PspGI CCWGG 3 cut(s) 393, 730, 811
PspN4I GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
PspPI GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
PspPPI RGGWCCY 1 cut(s) 764
PsrI GAACNNNNNNTAC 2 cut(s) 869, 901
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 500, 808
RseI CAYNNNNRTG 2 cut(s) 275, 758
Sau3AI GATC 3 cut(s) 4, 183, 435
Sau96I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 3 cut(s) 395, 732, 813
SfaNI GCATC 2 cut(s) 294, 922
SfcI CTRYAG 1 cut(s) 603
SfoI GGCGCC 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 4 cut(s) 540, 555, 665, 764
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 275, 758
SmlI CTYRAG 3 cut(s) 46, 342, 990
SmoI CTYRAG 3 cut(s) 46, 342, 990
Sse9I AATT 6 cut(s) 335, 347, 524, 580, 706, 783
SsiI CCGC 9 cut(s) 179, 209, 321, 398, 417, 455, 458, 465, 932
SspDI GGCGCC 1 cut(s) 238
SspMI CTAG 1 cut(s) 906
StyD4I CCNGG 3 cut(s) 393, 730, 811
TaaI ACNGT 2 cut(s) 651, 1005
TaiI ACGT 2 cut(s) 168, 250
TaqI TCGA 2 cut(s) 343, 407
TasI AATT 6 cut(s) 335, 347, 524, 580, 706, 783
TauI GCSGC 4 cut(s) 323, 419, 458, 461
TfiI GAWTC 2 cut(s) 327, 986
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 2 cut(s) 751, 831
Tsp45I GTSAC 2 cut(s) 751, 831
TspDTI ATGAA 2 cut(s) 537, 648
TspGWI ACGGA 2 cut(s) 381, 960
TspRI CASTG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 895
VpaK11BI GGWCC 4 cut(s) 540, 555, 665, 764
XapI RAATTY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 565
XhoI CTCGAG 1 cut(s) 342
XspI CTAG 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.