Rh2DG693400
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007171
Physical Location & Seq
Forward (+)
90995871 .. 91000460
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG693400.1

Sequence Viewer

Length: 1011 bp
ATGGATCCCAAAGCCTCAAAGCAGCCTCAGGAGATACCCAGCTTCTTGAGCCTGCCACAACCTCAGCAGCAACAACACCACCACCAACAACATCATCATCAGCAACAGCCCAACACCACCATGAGTGAGAACAACAACAACAGCAGCAACCACAACAACAACAACAACGTTGTCAAACCGGCGGAGATCAAAGACTTCCAGATTGCGATTGCGGACAAAGACGAAACCAAGAAGCAGTTGGCGCCCAAACGTAGCTCAAACAAAGACAGACACACAAAGGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCGGCTCTTTGCGCCGCGAGAATCTTCCAATTGACTCGAGAATTGGGCCACAAATCGGACGGAGAGACAATCCAATGGCTGCTGCACCAGGCGGAGCCGTCGATACTTGCCGCCACCGGCACGGGGACGATCCCAGCGTCGGCTCTGGCGGCGGCAGGCGGGTCGGTGTCGCAGCAGGGGACTTCTCTATCAGCTGGTCTGCACCAAAAGATAGATGAATTAGGAGGGGGAGGGTCCAGTGGAGGTAGGACCAGTTGGGCTATGGTGGGAGGGAATTTAGGGAGGCCCCATGTGGCTGCAGCAACTGGGCTATGGCCCCCTGCTGGGTTTGGTTTTTCTTCACAGTCATCTTCATCTGGTCCATCTACTACAAATCTGGGAGGGACTGAGAGCAGCTCAAATTACTTGCAAAAGATTGGGTTTCCTGGGGGGTTTGACTTGCCAGTCACCAACATGGGTCCTATGAGCTTCACTTCAATTCTGGGTGGGGGAAGTCAACAGCTGCCTGGTTTGGAACTTGGGTTGTCACAAGATGGCCATCTTGGGGTTTTGAACTCTCAGGCTGCTTTGAACCAGATTTACCAGCAGATGGGTCATGCTAGAGTGCATCACCAGCAGCAACACCCGCAGCAGCACCAGCACCAACACCAGCACCAGCAAGCTCCGTCTTCTAAGGATGATTCTCAAGGCTCAGGACAGTAG

Protein Analysis

336

Amino Acids

35.85

Weight (kDa)

9.02

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 86 - 318 5.1e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 898
AccII CGCG 1 cut(s) 326
AciI CCGC 9 cut(s) 182, 212, 324, 401, 420, 458, 461, 468, 935
AclI AACGTT 1 cut(s) 168
AclWI GGATC 2 cut(s) 12, 433
AcoI YGGCCR 1 cut(s) 844
AcsI RAATTY 1 cut(s) 583
AcyI GRCGYC 1 cut(s) 242
AfiI CCNNNNNNNGG 7 cut(s) 364, 432, 448, 632, 633, 853, 898
AgsI TTSAA 3 cut(s) 786, 862, 880
AjnI CCWGG 3 cut(s) 396, 733, 814
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 7 cut(s) 42, 255, 503, 705, 777, 811, 971
AluI AGCT 7 cut(s) 42, 255, 503, 705, 777, 811, 971
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 2 cut(s) 12, 433
AlwNI CAGNNNCTG 1 cut(s) 614
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 4 cut(s) 355, 593, 623, 844
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 2 cut(s) 244, 323
AspS9I GGNCC 7 cut(s) 355, 543, 558, 594, 624, 668, 767
AsuHPI GGTGA 2 cut(s) 748, 911
AvaI CYCGRG 1 cut(s) 345
AvaII GGWCC 4 cut(s) 543, 558, 668, 767
AxyI CCTNAGG 1 cut(s) 27
BalI TGGCCA 1 cut(s) 846
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 969
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 4 cut(s) 679, 836, 855, 892
BceAI ACGGC 1 cut(s) 391
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BciT130I CCWGG 3 cut(s) 398, 735, 816
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 1 cut(s) 909
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 245
Bme1390I CCNGG 3 cut(s) 398, 735, 816
Bme18I GGWCC 4 cut(s) 543, 558, 668, 767
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 7 cut(s) 355, 543, 558, 594, 624, 668, 767
BmiI GGNNCC 7 cut(s) 6, 243, 405, 544, 596, 626, 768
BmrFI CCNGG 3 cut(s) 398, 735, 816
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 2 cut(s) 297, 925
BmuI ACTGGG 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 969
BplI GAGNNNNNCTC 2 cut(s) 689, 721
Bpu10I CCTNAGC 2 cut(s) 63, 1000
BpuEI CTTGAG 2 cut(s) 67, 978
BsaBI GATNNNNATC 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 734
Bsc4I CCNNNNNNNGG 7 cut(s) 364, 432, 448, 632, 633, 853, 898
Bse118I RCCGGY 3 cut(s) 178, 310, 425
Bse1I ACTGG 4 cut(s) 546, 561, 619, 752
Bse21I CCTNAGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 846
BseBI CCWGG 3 cut(s) 398, 735, 816
BseDI CCNNGG 1 cut(s) 734
BseGI GGATG 2 cut(s) 312, 991
BseJI GATNNNNATC 1 cut(s) 846
BseLI CCNNNNNNNGG 7 cut(s) 364, 432, 448, 632, 633, 853, 898
BseMII CTCAG 4 cut(s) 41, 77, 687, 881
BseNI ACTGG 4 cut(s) 546, 561, 619, 752
BseYI CCCAGC 3 cut(s) 38, 442, 632
BsgI GTGCAG 2 cut(s) 377, 494
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 4 cut(s) 357, 595, 625, 846
BshNI GGYRCC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 3 cut(s) 179, 311, 426
BslFI GGGAC 3 cut(s) 448, 502, 706
BslI CCNNNNNNNGG 7 cut(s) 364, 432, 448, 632, 633, 853, 898
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 3 cut(s) 448, 502, 706
BsnI GGCC 4 cut(s) 357, 595, 625, 846
BsoBI CYCGRG 1 cut(s) 345
Bsp143I GATC 3 cut(s) 4, 186, 438
BspACI CCGC 9 cut(s) 182, 212, 324, 401, 420, 458, 461, 468, 935
BspANI GGCC 4 cut(s) 357, 595, 625, 846
BspCNI CTCAG 4 cut(s) 40, 76, 688, 880
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 7 cut(s) 6, 243, 405, 544, 596, 626, 768
BspMAI CTGCAG 1 cut(s) 610
BspPI GGATC 2 cut(s) 12, 433
BspT107I GGYRCC 1 cut(s) 241
BsrFI RCCGGY 3 cut(s) 178, 310, 425
BsrI ACTGG 4 cut(s) 546, 561, 619, 752
BssAI RCCGGY 3 cut(s) 178, 310, 425
BssECI CCNNGG 1 cut(s) 734
BssMI GATC 3 cut(s) 4, 186, 438
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 3 cut(s) 398, 735, 816
Bst4CI ACNGT 2 cut(s) 654, 1008
BstACI GRCGYC 1 cut(s) 242
BstC8I GCNNGC 4 cut(s) 53, 312, 466, 969
BstDEI CTNAG 6 cut(s) 27, 63, 696, 867, 981, 1000
BstF5I GGATG 2 cut(s) 312, 991
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 2 cut(s) 244, 323
BstKTI GATC 3 cut(s) 7, 189, 441
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 3 cut(s) 4, 186, 438
BstMWI GCNNNNNNNGC 7 cut(s) 48, 241, 320, 458, 922, 934, 946
BstNI CCWGG 3 cut(s) 398, 735, 816
BstSCI CCNGG 3 cut(s) 396, 733, 814
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 357, 595, 625, 846
BtsCI GGATG 2 cut(s) 312, 991
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 4 cut(s) 53, 312, 466, 969
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 2 cut(s) 244, 323
Cfr10I RCCGGY 3 cut(s) 178, 310, 425
Cfr13I GGNCC 7 cut(s) 355, 543, 558, 594, 624, 668, 767
CseI GACGC 1 cut(s) 435
CviAII CATG 4 cut(s) 121, 599, 763, 905
DdeI CTNAG 6 cut(s) 27, 63, 696, 867, 981, 1000
DinI GGCGCC 1 cut(s) 243
DpnI GATC 3 cut(s) 6, 188, 440
DpnII GATC 3 cut(s) 4, 186, 438
DrdI GACNNNNNNGTC 1 cut(s) 752
DseDI GACNNNNNNGTC 1 cut(s) 752
EaeI YGGCCR 1 cut(s) 844
EciI GGCGGA 2 cut(s) 197, 416
Eco47I GGWCC 4 cut(s) 543, 558, 668, 767
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 345
EcoO109I RGGNCCY 2 cut(s) 594, 767
EcoRII CCWGG 3 cut(s) 396, 733, 814
EgeI GGCGCC 1 cut(s) 243
EheI GGCGCC 1 cut(s) 243
FaeI CATG 4 cut(s) 124, 602, 766, 908
FaiI YATR 7 cut(s) 122, 572, 600, 622, 764, 773, 906
FaqI GGGAC 3 cut(s) 448, 502, 706
FatI CATG 4 cut(s) 120, 598, 762, 904
FauI CCCGC 2 cut(s) 461, 942
FokI GGATG 2 cut(s) 319, 998
FspBI CTAG 1 cut(s) 909
GlaI GCGC 2 cut(s) 243, 322
GsaI CCCAGC 3 cut(s) 42, 446, 636
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 4 cut(s) 357, 595, 625, 846
HapII CCGG 3 cut(s) 179, 311, 426
HgaI GACGC 1 cut(s) 435
HhaI GCGC 2 cut(s) 244, 323
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 4 cut(s) 124, 602, 766, 908
Hin6I GCGC 2 cut(s) 242, 321
HinP1I GCGC 2 cut(s) 242, 321
HincII GTYRAC 1 cut(s) 806
HindII GTYRAC 1 cut(s) 806
HinfI GANTC 3 cut(s) 330, 343, 989
HpaII CCGG 3 cut(s) 179, 311, 426
HphI GGTGA 2 cut(s) 748, 911
Hpy166II GTNNAC 1 cut(s) 806
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 5 cut(s) 29, 46, 199, 347, 1002
Hpy8I GTNNAC 1 cut(s) 806
Hpy99I CGWCG 2 cut(s) 412, 451
HpyAV CCTTC 2 cut(s) 278, 291
HpyCH4III ACNGT 2 cut(s) 654, 1008
HpyCH4IV ACGT 2 cut(s) 168, 250
HpyCH4V TGCA 5 cut(s) 394, 511, 608, 718, 916
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 241, 320, 458, 922, 934, 946
HpyF3I CTNAG 6 cut(s) 27, 63, 696, 867, 981, 1000
HpySE526I ACGT 2 cut(s) 168, 250
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 4 cut(s) 124, 602, 766, 908
HspAI GCGC 2 cut(s) 242, 321
KasI GGCGCC 1 cut(s) 241
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 3 cut(s) 4, 186, 438
LmnI GCTCC 2 cut(s) 403, 976
LweI GCATC 2 cut(s) 297, 925
MaeI CTAG 1 cut(s) 909
MaeII ACGT 2 cut(s) 168, 250
MaeIII GTNAC 2 cut(s) 754, 834
MalI GATC 3 cut(s) 6, 188, 440
MboI GATC 3 cut(s) 4, 186, 438
MboII GAAGA 5 cut(s) 306, 325, 639, 651, 969
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 846
MluCI AATT 6 cut(s) 338, 350, 527, 583, 709, 786
MluNI TGGCCA 1 cut(s) 846
Mly113I GGCGCC 1 cut(s) 242
MlyI GAGTC 1 cut(s) 337
Mox20I TGGCCA 1 cut(s) 846
MroNI GCCGGC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 846
MslI CAYNNNNRTG 3 cut(s) 119, 278, 761
Msp20I TGGCCA 1 cut(s) 846
MspA1I CMGCKG 2 cut(s) 503, 811
MspI CCGG 3 cut(s) 179, 311, 426
MspR9I CCNGG 3 cut(s) 398, 735, 816
MunI CAATTG 1 cut(s) 338
MvaI CCWGG 3 cut(s) 398, 735, 816
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 7 cut(s) 48, 241, 320, 458, 922, 934, 946
NaeI GCCGGC 1 cut(s) 312
NarI GGCGCC 1 cut(s) 242
NdeII GATC 3 cut(s) 4, 186, 438
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 4 cut(s) 124, 602, 766, 908
NlaIV GGNNCC 7 cut(s) 6, 243, 405, 544, 596, 626, 768
NmuCI GTSAC 2 cut(s) 754, 834
OliI CACNNNNGTG 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 330, 989
PflMI CCANNNNNTGG 1 cut(s) 898
PleI GAGTC 1 cut(s) 337
PluTI GGCGCC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 767
Psp1406I AACGTT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 3 cut(s) 396, 733, 814
PspFI CCCAGC 3 cut(s) 38, 442, 632
PspGI CCWGG 3 cut(s) 396, 733, 814
PspN4I GGNNCC 7 cut(s) 6, 243, 405, 544, 596, 626, 768
PspPI GGNCC 7 cut(s) 355, 543, 558, 594, 624, 668, 767
PspPPI RGGWCCY 1 cut(s) 767
PsrI GAACNNNNNNTAC 2 cut(s) 872, 904
PstI CTGCAG 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 503, 811
RseI CAYNNNNRTG 3 cut(s) 119, 278, 761
Sau3AI GATC 3 cut(s) 4, 186, 438
Sau96I GGNCC 7 cut(s) 355, 543, 558, 594, 624, 668, 767
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 3 cut(s) 398, 735, 816
SfaNI GCATC 2 cut(s) 297, 925
SfcI CTRYAG 1 cut(s) 606
SfoI GGCGCC 1 cut(s) 243
Sfr274I CTCGAG 1 cut(s) 345
SinI GGWCC 4 cut(s) 543, 558, 668, 767
SlaI CTCGAG 1 cut(s) 345
SmiMI CAYNNNNRTG 3 cut(s) 119, 278, 761
SmlI CTYRAG 3 cut(s) 46, 345, 993
SmoI CTYRAG 3 cut(s) 46, 345, 993
Sse9I AATT 6 cut(s) 338, 350, 527, 583, 709, 786
SsiI CCGC 9 cut(s) 182, 212, 324, 401, 420, 458, 461, 468, 935
SspDI GGCGCC 1 cut(s) 241
SspMI CTAG 1 cut(s) 909
StyD4I CCNGG 3 cut(s) 396, 733, 814
TaaI ACNGT 2 cut(s) 654, 1008
TaiI ACGT 2 cut(s) 171, 253
TaqI TCGA 2 cut(s) 346, 410
TasI AATT 6 cut(s) 338, 350, 527, 583, 709, 786
TauI GCSGC 4 cut(s) 326, 422, 461, 464
TfiI GAWTC 2 cut(s) 330, 989
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 2 cut(s) 754, 834
Tsp45I GTSAC 2 cut(s) 754, 834
TspDTI ATGAA 2 cut(s) 540, 651
TspGWI ACGGA 2 cut(s) 384, 963
TspRI CASTG 1 cut(s) 553
Van91I CCANNNNNTGG 1 cut(s) 898
VpaK11BI GGWCC 4 cut(s) 543, 558, 668, 767
XapI RAATTY 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 568
XhoI CTCGAG 1 cut(s) 345
XspI CTAG 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.