Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Forward (+)

82912052 .. 82913089

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGATCCCAAGGCCTCAAAGCAGCCTCAGGAGATACCCAGCTTCTTGAGCCTCCCACAACCTCAGCAACAACACCACCACCAACAACAACAACAACATCATCAGCAGCAGCAACAGCCCAACACCATGAGTGACAACAACAACAGCAGCAACAGCAACAACGTTGTCAAACCGGCGGAGATCAAAGACTTCCAGATTGCGATTGCGGACAAAGACGAAACCAAGAAGCAGTTGGCGCCCAAACGTAGCTCAAACAAAGACAGACACACAAAGGTTGAAGGCAGAGGAAGAAGGATAAGGATGCCGGCTCTTTGCGCCGCGAGAATCTTCCAATTGACTCGAGAATTGGGCCACAAATCGGACGGAGAAACAATCCAATGGCTGCTGCACCAGGCGGAGCCGTCGATACTTGCCGCGACCGGCACGGGGACGATCCCGGCGTCGGCTCTGGCGGCGGCAGGCGGGTCGGTGTCGCAGCAGGGGACTTCTCTATCAGCTGGTTTGCACCAAAAGATAGATGATTTAGGAGGGGGAGGGTCCAGTGGAGGTAGGACCAGTTGGGCTATGGTGGGAGGGAATTTAGGGAGGCCCCATGTGGCTGCAGCAACTGGGCTATGGCCCCCTGCTGGGTTTGGTTTTTCTTCACAGTCATCTTCATCTGGTCCATCTACTACAAATCTGGGAGGGACTGAGAGCAGCTCAAATTACTTGCAAAAGATTGGGTTTCCTGGGGGGTTTGACTTGCCAGTCACCAACATGGGTCCTATGAGCTTCACTTCAATTCTGGGTGGGGGAAGTCAACAGCTGCCTGGTTTGGAACTTGGGTTGTCACAAGATGGGCATCTTGGGGTTTTGAACTCTCAGGCTGCTTTGAACCAGATTTACCAGCAGATGGGTCATGCTAGAGTGCATCACCAGCAGCAACACCACCCGCAGCAGCACCAGCACCAGCACCAGCACCAGCACCAACACCAACACCAACACCAACACCAGCAAGCTCCGTCTTCTAAGGATGATTCTCAAGGCTCAGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

346

Amino Acids

37.05

Weight (kDa)

9.02

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	84 - 334	1.6e-25	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	892
AccII	CGCG	2 cut(s)	320, 416
AciI	CCGC	9 cut(s)	176, 206, 318, 395, 414, 452, 455, 462, 932
AclI	AACGTT	1 cut(s)	162
AclWI	GGATC	2 cut(s)	12, 427
AcsI	RAATTY	1 cut(s)	577
AcyI	GRCGYC	2 cut(s)	236, 440
AfiI	CCNNNNNNNGG	6 cut(s)	358, 426, 442, 626, 627, 892
AgsI	TTSAA	4 cut(s)	278, 780, 856, 874
AjnI	CCWGG	3 cut(s)	390, 727, 808
AluBI	AGCT	7 cut(s)	42, 249, 497, 699, 771, 805, 998
AluI	AGCT	7 cut(s)	42, 249, 497, 699, 771, 805, 998
AlwI	GGATC	2 cut(s)	12, 427
AlwNI	CAGNNNCTG	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	4 cut(s)	12, 349, 587, 617
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	2 cut(s)	238, 317
AspS9I	GGNCC	7 cut(s)	349, 537, 552, 588, 618, 662, 761
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	742, 905
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	4 cut(s)	537, 552, 662, 761
AxyI	CCTNAGG	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	996
BbvCI	CCTCAGC	1 cut(s)	63
BccI	CCATC	3 cut(s)	673, 830, 886
BceAI	ACGGC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BciT130I	CCWGG	3 cut(s)	392, 729, 810
BcnI	CCSGG	1 cut(s)	437
BfaI	CTAG	1 cut(s)	903
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	239
Bme1390I	CCNGG	4 cut(s)	392, 437, 729, 810
Bme18I	GGWCC	4 cut(s)	537, 552, 662, 761
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	7 cut(s)	349, 537, 552, 588, 618, 662, 761
BmiI	GGNNCC	7 cut(s)	6, 237, 399, 538, 590, 620, 762
BmrFI	CCNGG	4 cut(s)	392, 437, 729, 810
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	3 cut(s)	291, 850, 919
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	996
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
Bpu10I	CCTNAGC	2 cut(s)	63, 1027
BpuEI	CTTGAG	2 cut(s)	67, 1005
BpuMI	CCSGG	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	840
BsaHI	GRCGYC	2 cut(s)	236, 440
BsaJI	CCNNGG	2 cut(s)	9, 728
Bsc4I	CCNNNNNNNGG	6 cut(s)	358, 426, 442, 626, 627, 892
Bse118I	RCCGGY	3 cut(s)	172, 304, 419
Bse1I	ACTGG	4 cut(s)	540, 555, 613, 746
Bse21I	CCTNAGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	3 cut(s)	392, 729, 810
BseDI	CCNNGG	2 cut(s)	9, 728
BseGI	GGATG	2 cut(s)	306, 1018
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	6 cut(s)	358, 426, 442, 626, 627, 892
BseMII	CTCAG	4 cut(s)	41, 77, 681, 875
BseNI	ACTGG	4 cut(s)	540, 555, 613, 746
BseYI	CCCAGC	2 cut(s)	38, 626
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	2 cut(s)	320, 416
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	14, 351, 589, 619
BshNI	GGYRCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	4 cut(s)	173, 305, 420, 437
BslFI	GGGAC	3 cut(s)	442, 496, 700
BslI	CCNNNNNNNGG	6 cut(s)	358, 426, 442, 626, 627, 892
BsmFI	GGGAC	3 cut(s)	442, 496, 700
BsnI	GGCC	4 cut(s)	14, 351, 589, 619
BsoBI	CYCGRG	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	4, 180, 432
BspACI	CCGC	9 cut(s)	176, 206, 318, 395, 414, 452, 455, 462, 932
BspANI	GGCC	4 cut(s)	14, 351, 589, 619
BspCNI	CTCAG	4 cut(s)	40, 76, 682, 874
BspFNI	CGCG	2 cut(s)	320, 416
BspLI	GGNNCC	7 cut(s)	6, 237, 399, 538, 590, 620, 762
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	2 cut(s)	12, 427
BspT107I	GGYRCC	1 cut(s)	235
BsrFI	RCCGGY	3 cut(s)	172, 304, 419
BsrI	ACTGG	4 cut(s)	540, 555, 613, 746
BssAI	RCCGGY	3 cut(s)	172, 304, 419
BssECI	CCNNGG	2 cut(s)	9, 728
BssMI	GATC	3 cut(s)	4, 180, 432
BssNI	GRCGYC	2 cut(s)	236, 440
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	3 cut(s)	392, 729, 810
Bst4CI	ACNGT	2 cut(s)	648, 1035
BstACI	GRCGYC	2 cut(s)	236, 440
BstC8I	GCNNGC	3 cut(s)	306, 460, 996
BstDEI	CTNAG	6 cut(s)	27, 63, 690, 861, 1008, 1027
BstF5I	GGATG	2 cut(s)	306, 1018
BstFNI	CGCG	2 cut(s)	320, 416
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 317
BstKTI	GATC	3 cut(s)	7, 183, 435
BstMBI	GATC	3 cut(s)	4, 180, 432
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 115, 153, 235, 314, 452, 916, 943
BstNI	CCWGG	3 cut(s)	392, 729, 810
BstSCI	CCNGG	4 cut(s)	390, 435, 727, 808
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	2 cut(s)	320, 416
BstV2I	GAAGAC	1 cut(s)	996
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	14, 351, 589, 619
BtsCI	GGATG	2 cut(s)	306, 1018
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	3 cut(s)	306, 460, 996
CaiI	CAGNNNCTG	1 cut(s)	608
CfoI	GCGC	2 cut(s)	238, 317
Cfr10I	RCCGGY	3 cut(s)	172, 304, 419
Cfr13I	GGNCC	7 cut(s)	349, 537, 552, 588, 618, 662, 761
CseI	GACGC	1 cut(s)	429
CviAII	CATG	4 cut(s)	127, 593, 757, 899
DdeI	CTNAG	6 cut(s)	27, 63, 690, 861, 1008, 1027
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	3 cut(s)	6, 182, 434
DpnII	GATC	3 cut(s)	4, 180, 432
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
EciI	GGCGGA	2 cut(s)	191, 410
Eco130I	CCWWGG	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	14
Eco47I	GGWCC	4 cut(s)	537, 552, 662, 761
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	339
EcoO109I	RGGNCCY	2 cut(s)	588, 761
EcoRII	CCWGG	3 cut(s)	390, 727, 808
EcoT14I	CCWWGG	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	130, 596, 760, 902
FaiI	YATR	7 cut(s)	128, 566, 594, 616, 758, 767, 900
FaqI	GGGAC	3 cut(s)	442, 496, 700
FatI	CATG	4 cut(s)	126, 592, 756, 898
FauI	CCCGC	2 cut(s)	455, 939
FokI	GGATG	2 cut(s)	313, 1025
FspBI	CTAG	1 cut(s)	903
GlaI	GCGC	2 cut(s)	237, 316
GsaI	CCCAGC	2 cut(s)	42, 630
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	4 cut(s)	14, 351, 589, 619
HapII	CCGG	4 cut(s)	173, 305, 420, 437
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	2 cut(s)	238, 317
Hin1I	GRCGYC	2 cut(s)	236, 440
Hin1II	CATG	4 cut(s)	130, 596, 760, 902
Hin6I	GCGC	2 cut(s)	236, 315
HinP1I	GCGC	2 cut(s)	236, 315
HincII	GTYRAC	1 cut(s)	800
HindII	GTYRAC	1 cut(s)	800
HinfI	GANTC	3 cut(s)	324, 337, 1016
HpaII	CCGG	4 cut(s)	173, 305, 420, 437
HphI	GGTGA	2 cut(s)	742, 905
Hpy166II	GTNNAC	1 cut(s)	800
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	5 cut(s)	29, 46, 193, 341, 1029
Hpy8I	GTNNAC	1 cut(s)	800
Hpy99I	CGWCG	2 cut(s)	406, 445
HpyAV	CCTTC	2 cut(s)	272, 285
HpyCH4III	ACNGT	2 cut(s)	648, 1035
HpyCH4IV	ACGT	2 cut(s)	162, 244
HpyCH4V	TGCA	5 cut(s)	388, 505, 602, 712, 910
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 115, 153, 235, 314, 452, 916, 943
HpyF3I	CTNAG	6 cut(s)	27, 63, 690, 861, 1008, 1027
HpySE526I	ACGT	2 cut(s)	162, 244
Hsp92I	GRCGYC	2 cut(s)	236, 440
Hsp92II	CATG	4 cut(s)	130, 596, 760, 902
HspAI	GCGC	2 cut(s)	236, 315
KasI	GGCGCC	1 cut(s)	235
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	4, 180, 432
LmnI	GCTCC	2 cut(s)	397, 1003
LweI	GCATC	3 cut(s)	291, 850, 919
MaeI	CTAG	1 cut(s)	903
MaeII	ACGT	2 cut(s)	162, 244
MaeIII	GTNAC	3 cut(s)	131, 748, 828
MalI	GATC	3 cut(s)	6, 182, 434
MboI	GATC	3 cut(s)	4, 180, 432
MboII	GAAGA	5 cut(s)	300, 319, 633, 645, 996
MfeI	CAATTG	1 cut(s)	332
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	5 cut(s)	332, 344, 577, 703, 780
Mly113I	GGCGCC	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	331
MroNI	GCCGGC	1 cut(s)	304
MslI	CAYNNNNRTG	1 cut(s)	755
MspA1I	CMGCKG	2 cut(s)	497, 805
MspI	CCGG	4 cut(s)	173, 305, 420, 437
MspR9I	CCNGG	4 cut(s)	392, 437, 729, 810
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	3 cut(s)	392, 729, 810
MvnI	CGCG	2 cut(s)	320, 416
MwoI	GCNNNNNNNGC	8 cut(s)	48, 115, 153, 235, 314, 452, 916, 943
NaeI	GCCGGC	1 cut(s)	306
NarI	GGCGCC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	3 cut(s)	4, 180, 432
NgoMIV	GCCGGC	1 cut(s)	304
NlaIII	CATG	4 cut(s)	130, 596, 760, 902
NlaIV	GGNNCC	7 cut(s)	6, 237, 399, 538, 590, 620, 762
NmuCI	GTSAC	3 cut(s)	131, 748, 828
PaeR7I	CTCGAG	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PdiI	GCCGGC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	324, 1016
PflMI	CCANNNNNTGG	1 cut(s)	892
PleI	GAGTC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	761
Psp1406I	AACGTT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	3 cut(s)	390, 727, 808
PspFI	CCCAGC	2 cut(s)	38, 626
PspGI	CCWGG	3 cut(s)	390, 727, 808
PspN4I	GGNNCC	7 cut(s)	6, 237, 399, 538, 590, 620, 762
PspPI	GGNCC	7 cut(s)	349, 537, 552, 588, 618, 662, 761
PspPPI	RGGWCCY	1 cut(s)	761
PsrI	GAACNNNNNNTAC	2 cut(s)	866, 898
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	497, 805
RseI	CAYNNNNRTG	1 cut(s)	755
Sau3AI	GATC	3 cut(s)	4, 180, 432
Sau96I	GGNCC	7 cut(s)	349, 537, 552, 588, 618, 662, 761
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	4 cut(s)	392, 437, 729, 810
SfaNI	GCATC	3 cut(s)	291, 850, 919
SfcI	CTRYAG	1 cut(s)	600
SfoI	GGCGCC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	339
SinI	GGWCC	4 cut(s)	537, 552, 662, 761
SlaI	CTCGAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	3 cut(s)	46, 339, 1020
SmoI	CTYRAG	3 cut(s)	46, 339, 1020
Sse9I	AATT	5 cut(s)	332, 344, 577, 703, 780
SseBI	AGGCCT	1 cut(s)	14
SsiI	CCGC	9 cut(s)	176, 206, 318, 395, 414, 452, 455, 462, 932
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	903
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	4 cut(s)	390, 435, 727, 808
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	648, 1035
TaiI	ACGT	2 cut(s)	165, 247
TaqI	TCGA	2 cut(s)	340, 404
TasI	AATT	5 cut(s)	332, 344, 577, 703, 780
TauI	GCSGC	4 cut(s)	320, 416, 455, 458
TfiI	GAWTC	2 cut(s)	324, 1016
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	3 cut(s)	131, 748, 828
Tsp45I	GTSAC	3 cut(s)	131, 748, 828
TspDTI	ATGAA	1 cut(s)	645
TspGWI	ACGGA	2 cut(s)	378, 990
TspRI	CASTG	1 cut(s)	547
Van91I	CCANNNNNTGG	1 cut(s)	892
VpaK11BI	GGWCC	4 cut(s)	537, 552, 662, 761
XapI	RAATTY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	2 cut(s)	229, 562
XhoI	CTCGAG	1 cut(s)	339
XspI	CTAG	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.