Rroxscaffold_2G00076900
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007171
Physical Location & Seq
Reverse (-)
592484 .. 594355
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076900.1

Sequence Viewer

Length: 1023 bp
ATGGATCCCAAGGCCTCAAAGCAGCCTCAGGAGATACCCAGCTTCTTGAGCCTCCCACAACCTCAGCAACAACACCACCACCAACAACATCATCATCAGCAACAACCCAACACCATGAGTGAGAACAACAACAACAACAACAACAACCACAACAACAACAACAACGTTGTCAAACCGGCGGAGATCAAAGACTTCCAGATTGCGATTGCGGACAAAGACGAAACCAAGAAGCAGTTGGCGCCCAAACGTAGCTCAAACAAAGACAGACACACAAAGGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCGGCTCTCTGCGCCGCGAGAATCTTCCAATTGACTCGAGAATTGGGCCACAAATCGGACGGAGAAACAATCCAATGGCTGCTGCACCAGGCGGAGCCGTCGATACTCGCCGCCACCGGCACGGGGACGATCCCGGCGTCGGCTCTGGCGGCGGCAGGCGGGTCGGTGTCGCAGCAGGGGACTTCTCTATCAGCTGGTTTGCACCAAAAGATAGATGACTTGGGAGGGGGAGGGTCCAGTGGAGGTAGGACCAGTTGGGCTATGGTGGGAGGGAATTTAGGGAGGCCCCATGTGGCTGCAGCAACTGGGCTATGGCCCCCTGCTGGGTTTGGTTTTTCTTCACAGTCATCTTCATCTGGTCCATCTACTACAAATCTGGGAGGGACTGAGAGCAGCTCAAATTACTTGCAAAAGATTGGGTTTCCTGGGGGGTTTGACTTGCCAGTCACCAACATGGGTCCTATGAGCTTCACTTCAATTCTGGGTGGGGGAAGTCAACAGCTGCCTGGTTTGGAACTTGGGTTGTCACAAGATGGGCATCTTGGGGTTTTGAACTCTCAGGCTGCTTTGAACCAGATTTACCAGCAGATGGGTCATGCTAGAGTGCATCACCAGCAGCAACAGCAACAGCAACACCACCCGCACCAGCACCAGCACCAGCACCAACACCAGCAAGCTCCTTCTTCTAAGGATGATTCTCAAGGCTCAGGACAGTAG

Protein Analysis

340

Amino Acids

36.43

Weight (kDa)

9.02

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 85 - 326 1.2e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 895
AccII CGCG 1 cut(s) 323
AciI CCGC 9 cut(s) 179, 209, 321, 398, 417, 455, 458, 465, 947
AclI AACGTT 1 cut(s) 165
AclWI GGATC 2 cut(s) 12, 430
AcsI RAATTY 1 cut(s) 580
AcyI GRCGYC 2 cut(s) 239, 443
AfiI CCNNNNNNNGG 6 cut(s) 361, 429, 445, 629, 630, 895
AgsI TTSAA 3 cut(s) 783, 859, 877
AjnI CCWGG 3 cut(s) 393, 730, 811
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 7 cut(s) 42, 252, 500, 702, 774, 808, 983
AluI AGCT 7 cut(s) 42, 252, 500, 702, 774, 808, 983
AlwI GGATC 2 cut(s) 12, 430
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 4 cut(s) 12, 352, 590, 620
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 2 cut(s) 241, 320
AspS9I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 745, 908
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 4 cut(s) 540, 555, 665, 764
AxyI CCTNAGG 1 cut(s) 27
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 3 cut(s) 676, 833, 889
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BciT130I CCWGG 3 cut(s) 395, 732, 813
BcnI CCSGG 1 cut(s) 440
BfaI CTAG 1 cut(s) 906
BfmI CTRYAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 242
Bme1390I CCNGG 4 cut(s) 395, 440, 732, 813
Bme18I GGWCC 4 cut(s) 540, 555, 665, 764
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
BmiI GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
BmrFI CCNGG 4 cut(s) 395, 440, 732, 813
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 3 cut(s) 294, 853, 922
BmuI ACTGGG 1 cut(s) 621
BplI GAGNNNNNCTC 2 cut(s) 686, 718
Bpu10I CCTNAGC 2 cut(s) 63, 1012
BpuEI CTTGAG 2 cut(s) 67, 990
BpuMI CCSGG 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 2 cut(s) 239, 443
BsaJI CCNNGG 2 cut(s) 9, 731
Bsc4I CCNNNNNNNGG 6 cut(s) 361, 429, 445, 629, 630, 895
Bse118I RCCGGY 3 cut(s) 175, 307, 422
Bse1I ACTGG 4 cut(s) 543, 558, 616, 749
Bse21I CCTNAGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 3 cut(s) 395, 732, 813
BseDI CCNNGG 2 cut(s) 9, 731
BseGI GGATG 2 cut(s) 309, 1003
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 6 cut(s) 361, 429, 445, 629, 630, 895
BseMII CTCAG 4 cut(s) 41, 77, 684, 878
BseNI ACTGG 4 cut(s) 543, 558, 616, 749
BseYI CCCAGC 2 cut(s) 38, 629
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 4 cut(s) 14, 354, 592, 622
BshNI GGYRCC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 4 cut(s) 176, 308, 423, 440
BslFI GGGAC 3 cut(s) 445, 499, 703
BslI CCNNNNNNNGG 6 cut(s) 361, 429, 445, 629, 630, 895
BsmFI GGGAC 3 cut(s) 445, 499, 703
BsnI GGCC 4 cut(s) 14, 354, 592, 622
BsoBI CYCGRG 1 cut(s) 342
Bsp143I GATC 3 cut(s) 4, 183, 435
BspACI CCGC 9 cut(s) 179, 209, 321, 398, 417, 455, 458, 465, 947
BspANI GGCC 4 cut(s) 14, 354, 592, 622
BspCNI CTCAG 4 cut(s) 40, 76, 685, 877
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 2 cut(s) 12, 430
BspT107I GGYRCC 1 cut(s) 238
BsrFI RCCGGY 3 cut(s) 175, 307, 422
BsrI ACTGG 4 cut(s) 543, 558, 616, 749
BssAI RCCGGY 3 cut(s) 175, 307, 422
BssECI CCNNGG 2 cut(s) 9, 731
BssMI GATC 3 cut(s) 4, 183, 435
BssNI GRCGYC 2 cut(s) 239, 443
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 3 cut(s) 395, 732, 813
Bst4CI ACNGT 2 cut(s) 651, 1020
BstACI GRCGYC 2 cut(s) 239, 443
BstC8I GCNNGC 3 cut(s) 309, 463, 981
BstDEI CTNAG 6 cut(s) 27, 63, 693, 864, 993, 1012
BstF5I GGATG 2 cut(s) 309, 1003
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 2 cut(s) 241, 320
BstKTI GATC 3 cut(s) 7, 186, 438
BstMBI GATC 3 cut(s) 4, 183, 435
BstMWI GCNNNNNNNGC 6 cut(s) 48, 238, 317, 455, 919, 928
BstNI CCWGG 3 cut(s) 395, 732, 813
BstSCI CCNGG 4 cut(s) 393, 438, 730, 811
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 14, 354, 592, 622
BtsCI GGATG 2 cut(s) 309, 1003
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 3 cut(s) 309, 463, 981
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 2 cut(s) 241, 320
Cfr10I RCCGGY 3 cut(s) 175, 307, 422
Cfr13I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
CseI GACGC 1 cut(s) 432
CviAII CATG 4 cut(s) 115, 596, 760, 902
DdeI CTNAG 6 cut(s) 27, 63, 693, 864, 993, 1012
DinI GGCGCC 1 cut(s) 240
DpnI GATC 3 cut(s) 6, 185, 437
DpnII GATC 3 cut(s) 4, 183, 435
DrdI GACNNNNNNGTC 1 cut(s) 749
DseDI GACNNNNNNGTC 1 cut(s) 749
EciI GGCGGA 2 cut(s) 194, 413
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 14
Eco47I GGWCC 4 cut(s) 540, 555, 665, 764
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 2 cut(s) 591, 764
EcoRII CCWGG 3 cut(s) 393, 730, 811
EcoT14I CCWWGG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 240
EheI GGCGCC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 118, 599, 763, 905
FaiI YATR 7 cut(s) 116, 569, 597, 619, 761, 770, 903
FaqI GGGAC 3 cut(s) 445, 499, 703
FatI CATG 4 cut(s) 114, 595, 759, 901
FauI CCCGC 2 cut(s) 458, 954
FokI GGATG 2 cut(s) 316, 1010
FspBI CTAG 1 cut(s) 906
GlaI GCGC 2 cut(s) 240, 319
GsaI CCCAGC 2 cut(s) 42, 633
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 4 cut(s) 14, 354, 592, 622
HapII CCGG 4 cut(s) 176, 308, 423, 440
HgaI GACGC 1 cut(s) 432
HhaI GCGC 2 cut(s) 241, 320
Hin1I GRCGYC 2 cut(s) 239, 443
Hin1II CATG 4 cut(s) 118, 599, 763, 905
Hin6I GCGC 2 cut(s) 239, 318
HinP1I GCGC 2 cut(s) 239, 318
HincII GTYRAC 1 cut(s) 803
HindII GTYRAC 1 cut(s) 803
HinfI GANTC 3 cut(s) 327, 340, 1001
HpaII CCGG 4 cut(s) 176, 308, 423, 440
HphI GGTGA 2 cut(s) 745, 908
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 5 cut(s) 29, 46, 196, 344, 1014
Hpy8I GTNNAC 1 cut(s) 803
Hpy99I CGWCG 2 cut(s) 409, 448
HpyAV CCTTC 3 cut(s) 275, 288, 996
HpyCH4III ACNGT 2 cut(s) 651, 1020
HpyCH4IV ACGT 2 cut(s) 165, 247
HpyCH4V TGCA 5 cut(s) 391, 508, 605, 715, 913
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 238, 317, 455, 919, 928
HpyF3I CTNAG 6 cut(s) 27, 63, 693, 864, 993, 1012
HpySE526I ACGT 2 cut(s) 165, 247
Hsp92I GRCGYC 2 cut(s) 239, 443
Hsp92II CATG 4 cut(s) 118, 599, 763, 905
HspAI GCGC 2 cut(s) 239, 318
KasI GGCGCC 1 cut(s) 238
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 4, 183, 435
LmnI GCTCC 2 cut(s) 400, 988
LweI GCATC 3 cut(s) 294, 853, 922
MaeI CTAG 1 cut(s) 906
MaeII ACGT 2 cut(s) 165, 247
MaeIII GTNAC 2 cut(s) 751, 831
MalI GATC 3 cut(s) 6, 185, 437
MboI GATC 3 cut(s) 4, 183, 435
MboII GAAGA 5 cut(s) 303, 322, 636, 648, 981
MfeI CAATTG 1 cut(s) 335
MflI RGATCY 1 cut(s) 4
MluCI AATT 5 cut(s) 335, 347, 580, 706, 783
Mly113I GGCGCC 1 cut(s) 239
MlyI GAGTC 1 cut(s) 334
MroNI GCCGGC 1 cut(s) 307
MslI CAYNNNNRTG 2 cut(s) 275, 758
MspA1I CMGCKG 2 cut(s) 500, 808
MspI CCGG 4 cut(s) 176, 308, 423, 440
MspR9I CCNGG 4 cut(s) 395, 440, 732, 813
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 3 cut(s) 395, 732, 813
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 6 cut(s) 48, 238, 317, 455, 919, 928
NaeI GCCGGC 1 cut(s) 309
NarI GGCGCC 1 cut(s) 239
NciI CCSGG 1 cut(s) 440
NdeII GATC 3 cut(s) 4, 183, 435
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 4 cut(s) 118, 599, 763, 905
NlaIV GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
NmuCI GTSAC 2 cut(s) 751, 831
OliI CACNNNNGTG 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 327, 1001
PflMI CCANNNNNTGG 1 cut(s) 895
PleI GAGTC 1 cut(s) 334
PluTI GGCGCC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 764
Psp1406I AACGTT 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 393, 730, 811
PspFI CCCAGC 2 cut(s) 38, 629
PspGI CCWGG 3 cut(s) 393, 730, 811
PspN4I GGNNCC 7 cut(s) 6, 240, 402, 541, 593, 623, 765
PspPI GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
PspPPI RGGWCCY 1 cut(s) 764
PsrI GAACNNNNNNTAC 2 cut(s) 869, 901
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 500, 808
RseI CAYNNNNRTG 2 cut(s) 275, 758
Sau3AI GATC 3 cut(s) 4, 183, 435
Sau96I GGNCC 7 cut(s) 352, 540, 555, 591, 621, 665, 764
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 4 cut(s) 395, 440, 732, 813
SfaNI GCATC 3 cut(s) 294, 853, 922
SfcI CTRYAG 1 cut(s) 603
SfoI GGCGCC 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 4 cut(s) 540, 555, 665, 764
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 275, 758
SmlI CTYRAG 3 cut(s) 46, 342, 1005
SmoI CTYRAG 3 cut(s) 46, 342, 1005
Sse9I AATT 5 cut(s) 335, 347, 580, 706, 783
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 9 cut(s) 179, 209, 321, 398, 417, 455, 458, 465, 947
SspDI GGCGCC 1 cut(s) 238
SspMI CTAG 1 cut(s) 906
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 4 cut(s) 393, 438, 730, 811
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 651, 1020
TaiI ACGT 2 cut(s) 168, 250
TaqI TCGA 2 cut(s) 343, 407
TasI AATT 5 cut(s) 335, 347, 580, 706, 783
TauI GCSGC 4 cut(s) 323, 419, 458, 461
TfiI GAWTC 2 cut(s) 327, 1001
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 2 cut(s) 751, 831
Tsp45I GTSAC 2 cut(s) 751, 831
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 895
VpaK11BI GGWCC 4 cut(s) 540, 555, 665, 764
XapI RAATTY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 565
XhoI CTCGAG 1 cut(s) 342
XspI CTAG 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.