Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018801.1

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Reverse (-)

6831 .. 7841

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018801.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggatcccaaagcctcaaagcagcctcaggagatacccagcttcttgagcctgccacaacctcagcagcaacaacaccaccaccaacaacatcatcatcagcaacagcccaacaccaccatgagtgagaacaacaacaacagcagcaaccacaacaacaacaacaacgttgtcaaaccggcggagatcaaagacttccagattgcgattgcggacaaagacgaaaccaagaagcagttggcgcccaaacgtagctcaaacaaagacagacacacaaaggtggaaggcagaggaagaaggataaggatgccggctctttgcgccgcgagaatcttccaattgactcgagaattgggccacaaatcggacggagagacaatccaatggctgctgcaccaggcggagccgtcgatacttgccgccaccggcacggggacgatcccagcgtcggctctggcggcggcaggcgggtcggtgtcgcagcaggggacttctctatcagctggtctgcaccaaaagatagatgaattaggagggggagggtccagtggaggtaggaccagttgggctatggtgggagggaatttagggaggccccatgtggctgcagcaactgggctatggccccctgctgggtttggtttttcttcacagtcatcttcatctggtccatctactacaaatctgggagggactgagagcagctcaaattacttgcaaaagattgggtttcctggggggtttgacttgccagtcaccaacatgggtcctatgagcttcacttcaattctgggtgggggaagtcaacagctgcctggtttggaacttgggttgtcacaagatggccatcttggggttttgaactctcaggctgctttgaaccagatttaccagcagatgggtcacgccagagtgcatcaccagcagcaacacccgcagcagcaccagcaccagcaccaacaccagcaagctccgtcttctaaggatgattctcaaggctcaggacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

336

Amino Acids

35.85

Weight (kDa)

9.02

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccII	CGCG	1 cut(s)	326
AciI	CCGC	9 cut(s)	182, 212, 324, 401, 420, 458, 461, 468, 935
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	2 cut(s)	12, 433
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	1 cut(s)	583
AcyI	GRCGYC	1 cut(s)	242
AfiI	CCNNNNNNNGG	7 cut(s)	364, 432, 448, 632, 633, 853, 898
AgsI	TTSAA	3 cut(s)	786, 862, 880
AjnI	CCWGG	3 cut(s)	396, 733, 814
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	7 cut(s)	42, 255, 503, 705, 777, 811, 971
AluI	AGCT	7 cut(s)	42, 255, 503, 705, 777, 811, 971
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	12, 433
AlwNI	CAGNNNCTG	1 cut(s)	614
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	4 cut(s)	355, 593, 623, 844
ApoI	RAATTY	1 cut(s)	583
AspLEI	GCGC	2 cut(s)	244, 323
AspS9I	GGNCC	7 cut(s)	355, 543, 558, 594, 624, 668, 767
AsuHPI	GGTGA	2 cut(s)	748, 911
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	4 cut(s)	543, 558, 668, 767
AxyI	CCTNAGG	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	846
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	969
BbvCI	CCTCAGC	1 cut(s)	63
BccI	CCATC	4 cut(s)	679, 836, 855, 892
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BciT130I	CCWGG	3 cut(s)	398, 735, 816
BcoDI	GTCTC	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	245
Bme1390I	CCNGG	3 cut(s)	398, 735, 816
Bme18I	GGWCC	4 cut(s)	543, 558, 668, 767
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	7 cut(s)	355, 543, 558, 594, 624, 668, 767
BmiI	GGNNCC	7 cut(s)	6, 243, 405, 544, 596, 626, 768
BmrFI	CCNGG	3 cut(s)	398, 735, 816
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	2 cut(s)	297, 925
BmuI	ACTGGG	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	969
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	2 cut(s)	63, 1000
BpuEI	CTTGAG	2 cut(s)	67, 978
BsaBI	GATNNNNATC	1 cut(s)	846
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	7 cut(s)	364, 432, 448, 632, 633, 853, 898
Bse118I	RCCGGY	3 cut(s)	178, 310, 425
Bse1I	ACTGG	4 cut(s)	546, 561, 619, 752
Bse21I	CCTNAGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	3 cut(s)	398, 735, 816
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	2 cut(s)	312, 991
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	7 cut(s)	364, 432, 448, 632, 633, 853, 898
BseMII	CTCAG	4 cut(s)	41, 77, 687, 881
BseNI	ACTGG	4 cut(s)	546, 561, 619, 752
BseYI	CCCAGC	3 cut(s)	38, 442, 632
BsgI	GTGCAG	2 cut(s)	377, 494
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	4 cut(s)	357, 595, 625, 846
BshNI	GGYRCC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	3 cut(s)	179, 311, 426
BslFI	GGGAC	3 cut(s)	448, 502, 706
BslI	CCNNNNNNNGG	7 cut(s)	364, 432, 448, 632, 633, 853, 898
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	448, 502, 706
BsnI	GGCC	4 cut(s)	357, 595, 625, 846
BsoBI	CYCGRG	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	4, 186, 438
BspACI	CCGC	9 cut(s)	182, 212, 324, 401, 420, 458, 461, 468, 935
BspANI	GGCC	4 cut(s)	357, 595, 625, 846
BspCNI	CTCAG	4 cut(s)	40, 76, 688, 880
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	7 cut(s)	6, 243, 405, 544, 596, 626, 768
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	2 cut(s)	12, 433
BspT107I	GGYRCC	1 cut(s)	241
BsrFI	RCCGGY	3 cut(s)	178, 310, 425
BsrI	ACTGG	4 cut(s)	546, 561, 619, 752
BssAI	RCCGGY	3 cut(s)	178, 310, 425
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	3 cut(s)	4, 186, 438
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	3 cut(s)	398, 735, 816
Bst4CI	ACNGT	2 cut(s)	654, 1008
BstACI	GRCGYC	1 cut(s)	242
BstC8I	GCNNGC	4 cut(s)	53, 312, 466, 969
BstDEI	CTNAG	6 cut(s)	27, 63, 696, 867, 981, 1000
BstF5I	GGATG	2 cut(s)	312, 991
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	244, 323
BstKTI	GATC	3 cut(s)	7, 189, 441
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	3 cut(s)	4, 186, 438
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 241, 320, 458, 922, 934, 946
BstNI	CCWGG	3 cut(s)	398, 735, 816
BstSCI	CCNGG	3 cut(s)	396, 733, 814
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	969
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	357, 595, 625, 846
BtsCI	GGATG	2 cut(s)	312, 991
BtsIMutI	CAGTG	1 cut(s)	553
Cac8I	GCNNGC	4 cut(s)	53, 312, 466, 969
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	2 cut(s)	244, 323
Cfr10I	RCCGGY	3 cut(s)	178, 310, 425
Cfr13I	GGNCC	7 cut(s)	355, 543, 558, 594, 624, 668, 767
CseI	GACGC	1 cut(s)	435
CviAII	CATG	3 cut(s)	121, 599, 763
DdeI	CTNAG	6 cut(s)	27, 63, 696, 867, 981, 1000
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	3 cut(s)	6, 188, 440
DpnII	GATC	3 cut(s)	4, 186, 438
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
EaeI	YGGCCR	1 cut(s)	844
EciI	GGCGGA	2 cut(s)	197, 416
Eco47I	GGWCC	4 cut(s)	543, 558, 668, 767
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	594, 767
EcoRII	CCWGG	3 cut(s)	396, 733, 814
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
FaeI	CATG	3 cut(s)	124, 602, 766
FaiI	YATR	6 cut(s)	122, 572, 600, 622, 764, 773
FaqI	GGGAC	3 cut(s)	448, 502, 706
FatI	CATG	3 cut(s)	120, 598, 762
FauI	CCCGC	2 cut(s)	461, 942
FokI	GGATG	2 cut(s)	319, 998
GlaI	GCGC	2 cut(s)	243, 322
GsaI	CCCAGC	3 cut(s)	42, 446, 636
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	4 cut(s)	357, 595, 625, 846
HapII	CCGG	3 cut(s)	179, 311, 426
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	2 cut(s)	244, 323
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	124, 602, 766
Hin6I	GCGC	2 cut(s)	242, 321
HinP1I	GCGC	2 cut(s)	242, 321
HincII	GTYRAC	1 cut(s)	806
HindII	GTYRAC	1 cut(s)	806
HinfI	GANTC	3 cut(s)	330, 343, 989
HpaII	CCGG	3 cut(s)	179, 311, 426
HphI	GGTGA	2 cut(s)	748, 911
Hpy166II	GTNNAC	1 cut(s)	806
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	5 cut(s)	29, 46, 199, 347, 1002
Hpy8I	GTNNAC	1 cut(s)	806
Hpy99I	CGWCG	2 cut(s)	412, 451
HpyAV	CCTTC	2 cut(s)	278, 291
HpyCH4III	ACNGT	2 cut(s)	654, 1008
HpyCH4IV	ACGT	2 cut(s)	168, 250
HpyCH4V	TGCA	5 cut(s)	394, 511, 608, 718, 916
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 241, 320, 458, 922, 934, 946
HpyF3I	CTNAG	6 cut(s)	27, 63, 696, 867, 981, 1000
HpySE526I	ACGT	2 cut(s)	168, 250
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	124, 602, 766
HspAI	GCGC	2 cut(s)	242, 321
KasI	GGCGCC	1 cut(s)	241
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	4, 186, 438
LmnI	GCTCC	2 cut(s)	403, 976
LweI	GCATC	2 cut(s)	297, 925
MaeII	ACGT	2 cut(s)	168, 250
MaeIII	GTNAC	3 cut(s)	754, 834, 902
MalI	GATC	3 cut(s)	6, 188, 440
MboI	GATC	3 cut(s)	4, 186, 438
MboII	GAAGA	5 cut(s)	306, 325, 639, 651, 969
MfeI	CAATTG	1 cut(s)	338
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	6 cut(s)	338, 350, 527, 583, 709, 786
MluNI	TGGCCA	1 cut(s)	846
Mly113I	GGCGCC	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	337
Mox20I	TGGCCA	1 cut(s)	846
MroNI	GCCGGC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	846
MslI	CAYNNNNRTG	3 cut(s)	119, 278, 761
Msp20I	TGGCCA	1 cut(s)	846
MspA1I	CMGCKG	2 cut(s)	503, 811
MspI	CCGG	3 cut(s)	179, 311, 426
MspR9I	CCNGG	3 cut(s)	398, 735, 816
MunI	CAATTG	1 cut(s)	338
MvaI	CCWGG	3 cut(s)	398, 735, 816
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	7 cut(s)	48, 241, 320, 458, 922, 934, 946
NaeI	GCCGGC	1 cut(s)	312
NarI	GGCGCC	1 cut(s)	242
NdeII	GATC	3 cut(s)	4, 186, 438
NgoMIV	GCCGGC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	124, 602, 766
NlaIV	GGNNCC	7 cut(s)	6, 243, 405, 544, 596, 626, 768
NmuCI	GTSAC	3 cut(s)	754, 834, 902
OliI	CACNNNNGTG	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	443
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	330, 989
PflMI	CCANNNNNTGG	1 cut(s)	898
PleI	GAGTC	1 cut(s)	337
PluTI	GGCGCC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	767
Psp1406I	AACGTT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	3 cut(s)	396, 733, 814
PspFI	CCCAGC	3 cut(s)	38, 442, 632
PspGI	CCWGG	3 cut(s)	396, 733, 814
PspN4I	GGNNCC	7 cut(s)	6, 243, 405, 544, 596, 626, 768
PspPI	GGNCC	7 cut(s)	355, 543, 558, 594, 624, 668, 767
PspPPI	RGGWCCY	1 cut(s)	767
PsrI	GAACNNNNNNTAC	2 cut(s)	872, 904
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	503, 811
RseI	CAYNNNNRTG	3 cut(s)	119, 278, 761
Sau3AI	GATC	3 cut(s)	4, 186, 438
Sau96I	GGNCC	7 cut(s)	355, 543, 558, 594, 624, 668, 767
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	3 cut(s)	398, 735, 816
SfaNI	GCATC	2 cut(s)	297, 925
SfcI	CTRYAG	1 cut(s)	606
SfoI	GGCGCC	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	345
SinI	GGWCC	4 cut(s)	543, 558, 668, 767
SlaI	CTCGAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	3 cut(s)	119, 278, 761
SmlI	CTYRAG	3 cut(s)	46, 345, 993
SmoI	CTYRAG	3 cut(s)	46, 345, 993
Sse9I	AATT	6 cut(s)	338, 350, 527, 583, 709, 786
SsiI	CCGC	9 cut(s)	182, 212, 324, 401, 420, 458, 461, 468, 935
SspDI	GGCGCC	1 cut(s)	241
StyD4I	CCNGG	3 cut(s)	396, 733, 814
TaaI	ACNGT	2 cut(s)	654, 1008
TaiI	ACGT	2 cut(s)	171, 253
TaqI	TCGA	2 cut(s)	346, 410
TasI	AATT	6 cut(s)	338, 350, 527, 583, 709, 786
TauI	GCSGC	4 cut(s)	326, 422, 461, 464
TfiI	GAWTC	2 cut(s)	330, 989
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	3 cut(s)	754, 834, 902
Tsp45I	GTSAC	3 cut(s)	754, 834, 902
TspDTI	ATGAA	2 cut(s)	540, 651
TspGWI	ACGGA	2 cut(s)	384, 963
TspRI	CASTG	1 cut(s)	553
Van91I	CCANNNNNTGG	1 cut(s)	898
VpaK11BI	GGWCC	4 cut(s)	543, 558, 668, 767
XapI	RAATTY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	2 cut(s)	235, 568
XhoI	CTCGAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.