Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Forward (+)

26884295 .. 26888652

Gene Structure 4358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATCCCAAGGGCTCAAAGCAGACACAAGAGATACCCAGCTTCTTGAGCCTCCCACAGCCTCAACAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCCCAACATGAGTGAGAACAAACCTGCTGAAATCAAAGATTTCCAGATTGTGATTGCAGACAAAGAAGAGGGGAAGAAGCAGTTGGCGCCCAAGAGAAGCTCAAACAAAGACAGACACACAAAGGTTGAAGGCAGGGGAAGGAGGATACGGATGCCTGCTCTGTGTGCAGCAAGAATTTTTCAATTGACCAGAGAATTGGGCCACAAATCTGATGGGGAAACCATACAGTGGCTTTTGCAGCAGGCCGAACCGTCGATAATTGCAGCCACCGGGACCGGTACGATACCAGCATCGGCTTTAACAGCGGCAGGAGGCTCTGTTTCACAGCAGGGGACTTCTCTATCAGCTGGATTGCACCAAAAGATTGATGAATTGGGGGGGTCCAGTATTGGGTCAGGGAGTAGGACCAGTTGGGCAATGGTAGGTGGGAATTTGGGGAGACCCCATGTGGCCACTGGGCTATGGCCCCCTGTCAGTAGCTTTGGTTTCCAGTCATCATCTGGTCCATCAACAACAAATCTGGGCAGTGAGAGTTCAAATTACATGCAAAAGATTGGCTTTCCTGGCTTTGACTTGCCTGTCTCCAACATGGGTCCTATGAGTTTCACCTCAATTTTGGGTGGTGGGAGTAACCAACAGCTTCCTGGCTTGGAGCTTGGGTTGTCTCAGGATGGTCATATTGGGGTTTTGAACTCACAAGCCTTGAGCCAGATTTACCAGCAGATGGGGCATGCTAGAGTACACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAACCCCCTGCTAAGGATGACTCTCAAGGCTCAGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

311

Amino Acids

33.35

Weight (kDa)

9.02

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	2 cut(s)	336, 832
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	282, 538
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	388, 849
AfiI	CCNNNNNNNGG	4 cut(s)	336, 498, 832, 904
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	236, 290, 645, 799
AjnI	CCWGG	2 cut(s)	670, 751
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	6 cut(s)	42, 207, 455, 588, 748, 763
AluI	AGCT	6 cut(s)	42, 207, 455, 588, 748, 763
Alw26I	GTCTC	3 cut(s)	541, 694, 777
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	307, 351, 558, 572
ApoI	RAATTY	2 cut(s)	282, 538
AsiGI	ACCGGT	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	7 cut(s)	307, 381, 489, 513, 573, 611, 701
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	706
AvaII	GGWCC	5 cut(s)	381, 489, 513, 611, 701
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	17
BccI	CCATC	4 cut(s)	314, 622, 773, 826
BciT130I	CCWGG	2 cut(s)	672, 753
BciVI	GTATCC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	3 cut(s)	541, 694, 777
BfaI	CTAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	246
Bme1390I	CCNGG	3 cut(s)	379, 672, 753
Bme18I	GGWCC	5 cut(s)	381, 489, 513, 611, 701
BmgT120I	GGNCC	7 cut(s)	307, 381, 489, 513, 573, 611, 701
BmiI	GGNNCC	6 cut(s)	6, 195, 382, 490, 575, 702
BmrFI	CCNGG	3 cut(s)	379, 672, 753
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	249, 407
BmuI	ACTGGG	1 cut(s)	573
Bpu10I	CCTNAGC	2 cut(s)	903, 922
BpuEI	CTTGAG	3 cut(s)	67, 832, 900
BpuMI	CCSGG	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 441, 752, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	336, 498, 832, 904
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	4 cut(s)	492, 516, 568, 598
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	672, 753
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	3 cut(s)	264, 784, 913
BseLI	CCNNNNNNNGG	4 cut(s)	336, 498, 832, 904
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	4 cut(s)	492, 516, 568, 598
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	4 cut(s)	309, 353, 560, 574
BshNI	GGYRCC	1 cut(s)	193
BshTI	ACCGGT	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	378, 384
BslFI	GGGAC	2 cut(s)	394, 454
BslI	CCNNNNNNNGG	4 cut(s)	336, 498, 832, 904
BsmAI	GTCTC	3 cut(s)	541, 694, 777
BsmFI	GGGAC	2 cut(s)	394, 454
BsnI	GGCC	4 cut(s)	309, 353, 560, 574
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	4 cut(s)	309, 353, 560, 574
BspCNI	CTCAG	1 cut(s)	787
BspLI	GGNNCC	6 cut(s)	6, 195, 382, 490, 575, 702
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	4 cut(s)	492, 516, 568, 598
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	672, 753
Bst4CI	ACNGT	3 cut(s)	336, 360, 930
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	264, 351, 840
BstDEI	CTNAG	3 cut(s)	774, 903, 922
BstF5I	GGATG	3 cut(s)	264, 784, 913
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	3 cut(s)	541, 694, 777
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	2 cut(s)	672, 753
BstNSI	RCATGY	2 cut(s)	655, 842
BstSCI	CCNGG	3 cut(s)	377, 670, 751
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	4 cut(s)	309, 353, 560, 574
BtsCI	GGATG	3 cut(s)	264, 784, 913
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	3 cut(s)	341, 561, 640
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	3 cut(s)	264, 351, 840
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	7 cut(s)	307, 381, 489, 513, 573, 611, 701
Csp6I	GTAC	2 cut(s)	387, 848
CspAI	ACCGGT	1 cut(s)	383
CviAII	CATG	5 cut(s)	115, 554, 652, 697, 839
CviQI	GTAC	2 cut(s)	387, 848
DdeI	CTNAG	3 cut(s)	774, 903, 922
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	5 cut(s)	381, 489, 513, 611, 701
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	2 cut(s)	670, 751
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	5 cut(s)	118, 557, 655, 700, 842
FaiI	YATR	9 cut(s)	116, 332, 555, 571, 653, 698, 707, 786, 840
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FaqI	GGGAC	2 cut(s)	394, 454
FatI	CATG	5 cut(s)	114, 553, 651, 696, 838
FokI	GGATG	3 cut(s)	271, 791, 920
FriOI	GRGCYC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	4 cut(s)	309, 353, 560, 574
HapII	CCGG	2 cut(s)	378, 384
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	118, 557, 655, 700, 842
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	911
HpaII	CCGG	2 cut(s)	378, 384
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	1 cut(s)	850
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	4 cut(s)	46, 151, 776, 924
Hpy8I	GTNNAC	1 cut(s)	850
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	230, 240
HpyCH4III	ACNGT	3 cut(s)	336, 360, 930
HpyCH4V	TGCA	6 cut(s)	164, 275, 346, 371, 463, 655
HpyF3I	CTNAG	3 cut(s)	774, 903, 922
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	5 cut(s)	118, 557, 655, 700, 842
HspAI	GCGC	1 cut(s)	194
KasI	GGCGCC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	760
LweI	GCATC	2 cut(s)	249, 407
MaeI	CTAG	1 cut(s)	843
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	185, 193
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	8 cut(s)	282, 290, 302, 366, 479, 538, 646, 720
MluNI	TGGCCA	1 cut(s)	560
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	1 cut(s)	717
MnlI	CCTC	6 cut(s)	62, 72, 169, 243, 413, 727
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	2 cut(s)	413, 455
MspI	CCGG	2 cut(s)	378, 384
MspR9I	CCNGG	3 cut(s)	379, 672, 753
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	672, 753
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	118, 557, 655, 700, 842
NlaIV	GGNNCC	6 cut(s)	6, 195, 382, 490, 575, 702
NspI	RCATGY	2 cut(s)	655, 842
PaeI	GCATGC	1 cut(s)	842
PflMI	CCANNNNNTGG	2 cut(s)	336, 832
PinAI	ACCGGT	1 cut(s)	383
PleI	GAGTC	1 cut(s)	905
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	905
PpuMI	RGGWCCY	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	670, 751
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	670, 751
PspN4I	GGNNCC	6 cut(s)	6, 195, 382, 490, 575, 702
PspPI	GGNCC	7 cut(s)	307, 381, 489, 513, 573, 611, 701
PspPPI	RGGWCCY	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	388, 849
RsaNI	GTAC	2 cut(s)	387, 848
SaqAI	TTAA	1 cut(s)	407
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	7 cut(s)	307, 381, 489, 513, 573, 611, 701
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	3 cut(s)	379, 672, 753
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	249, 407
SfoI	GGCGCC	1 cut(s)	195
SinI	GGWCC	5 cut(s)	381, 489, 513, 611, 701
SmlI	CTYRAG	3 cut(s)	46, 811, 915
SmoI	CTYRAG	3 cut(s)	46, 811, 915
SphI	GCATGC	1 cut(s)	842
Sse9I	AATT	8 cut(s)	282, 290, 302, 366, 479, 538, 646, 720
SsiI	CCGC	1 cut(s)	413
SspDI	GGCGCC	1 cut(s)	193
SspMI	CTAG	1 cut(s)	843
StyD4I	CCNGG	3 cut(s)	377, 670, 751
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	336, 360, 930
TaqI	TCGA	1 cut(s)	362
TasI	AATT	8 cut(s)	282, 290, 302, 366, 479, 538, 646, 720
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	1 cut(s)	416
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	3 cut(s)	341, 568, 640
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	3 cut(s)	341, 568, 640
Van91I	CCANNNNNTGG	2 cut(s)	336, 832
VpaK11BI	GGWCC	5 cut(s)	381, 489, 513, 611, 701
XapI	RAATTY	2 cut(s)	282, 538
XceI	RCATGY	2 cut(s)	655, 842
XcmI	CCANNNNNNNNNTGG	5 cut(s)	317, 523, 560, 605, 749
XspI	CTAG	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.