MD13G1122900.v1.1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007171
Physical Location & Seq
Forward (+)
9108309 .. 9109998
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1122900.v1.1.491

Sequence Viewer

Length: 753 bp
ATGGCAGAGAACAACAAGCATCCGGCACAAATCAAGGACCTACAGATTATGATTGCAAACAAAGAGAAGGATGAAAGCAAGAAGCAGTTAGCACCAAAGAGGAGCTCCACTAAGGACAGGCACAAGAAAGTGGATGGCAGGGGGAGAAGAATAAGGATGCCGGCGCTCTGCGCGGCTAGGGTTTTTCAGCTCACAAGAGAATTGGGTCACAAGTCCGACGGTGAGACAATCCAGTGGCTTTTACAGCAAGCAGAACCGTCAATTGTAGCTGCTACTGGCTCCGGGACCATGCCGGCGTCAGCTCTGGCAGCGGCTGCAGAGTCCTCTGTTTCTGAACAGGGGAACTCTGTTTCCTCTGGATTAATGAGCTTTGGCCATATGGGGAGATCTAATGCAGCAACTGGGATTTGGCCTTTCGTCAGTGGGATTAGGTCAAGTTTTGATCACAATTCTGGTCAGCAAACGTTGAATTTTGGGGGTGAGAACTTGAATTTCATGCATAAGTTTGGTTTCCAAGGATTTGATGCTCCTGGTAATTTGGGATCAGTGAGTTTTCCCACAACTCTGAGTGGAAGCAATCAGCAAGTTCCAGGTCTGGAGCTTGGACTTTCTCAGGATGGTCACATTGGGTTGGTGAATTCTCAAGCTTTGAGTTTGACCCAATTTCTTCAGAACAAGGTGCAGAGGCCTAGGGGTGTTGGTTCCTTCAGTCAGCAGCAGCAGCAGCAACAACAATCGAATACAAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

251

Amino Acids

26.95

Weight (kDa)

9.67

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 36 - 157 1e-27 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 173, 311
AclI AACGTT 1 cut(s) 464
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 3 cut(s) 469, 490, 637
AcuI CTGAAG 2 cut(s) 653, 691
AcyI GRCGYC 1 cut(s) 296
AgsI TTSAA 2 cut(s) 469, 490
AjnI CCWGG 2 cut(s) 529, 589
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 7 cut(s) 105, 190, 269, 302, 369, 601, 647
AluI AGCT 7 cut(s) 105, 190, 269, 302, 369, 601, 647
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 550
AlwNI CAGNNNCTG 2 cut(s) 314, 401
AoxI GGCC 3 cut(s) 373, 410, 686
ApeKI GCWGC 8 cut(s) 269, 308, 314, 395, 715, 718, 721, 724
ApoI RAATTY 3 cut(s) 469, 490, 637
AseI ATTAAT 1 cut(s) 362
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 2 cut(s) 166, 173
AspS9I GGNCC 2 cut(s) 37, 285
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 3 cut(s) 233, 491, 646
AvaII GGWCC 2 cut(s) 37, 285
AvrII CCTAGG 1 cut(s) 689
BalI TGGCCA 1 cut(s) 375
BanII GRGCYC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 8 cut(s) 256, 301, 320, 407, 727, 730, 733, 736
BccI CCATC 2 cut(s) 128, 611
BciT130I CCWGG 2 cut(s) 531, 591
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 177, 690
BfmI CTRYAG 2 cut(s) 41, 315
BfoI RGCGCY 1 cut(s) 167
BglII AGATCT 1 cut(s) 386
BlnI CCTAGG 1 cut(s) 689
Bme1390I CCNGG 3 cut(s) 283, 531, 591
Bme18I GGWCC 2 cut(s) 37, 285
BmgT120I GGNCC 2 cut(s) 37, 285
BmiI GGNNCC 3 cut(s) 280, 286, 703
BmrFI CCNGG 3 cut(s) 283, 531, 591
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 3 cut(s) 28, 147, 514
BmuI ACTGGG 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 627
BpuMI CCSGG 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 514, 689
Bse118I RCCGGY 2 cut(s) 160, 292
Bse1I ACTGG 3 cut(s) 232, 280, 406
BseBI CCWGG 2 cut(s) 531, 591
BseDI CCNNGG 2 cut(s) 514, 689
BseGI GGATG 5 cut(s) 19, 76, 139, 162, 622
BseMII CTCAG 2 cut(s) 557, 626
BseNI ACTGG 3 cut(s) 232, 280, 406
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 8 cut(s) 256, 301, 320, 407, 727, 730, 733, 736
BsgI GTGCAG 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 3 cut(s) 375, 412, 688
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 4 cut(s) 23, 161, 282, 293
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 3 cut(s) 375, 412, 688
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 386, 442, 542
BspACI CCGC 2 cut(s) 173, 311
BspANI GGCC 3 cut(s) 375, 412, 688
BspCNI CTCAG 2 cut(s) 558, 625
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 3 cut(s) 280, 286, 703
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 550
BsrFI RCCGGY 2 cut(s) 160, 292
BsrI ACTGG 3 cut(s) 232, 280, 406
BssAI RCCGGY 2 cut(s) 160, 292
BssECI CCNNGG 2 cut(s) 514, 689
BssMI GATC 3 cut(s) 386, 442, 542
BssNI GRCGYC 1 cut(s) 296
BssT1I CCWWGG 2 cut(s) 514, 689
Bst2UI CCWGG 2 cut(s) 531, 591
Bst4CI ACNGT 2 cut(s) 221, 258
BstACI GRCGYC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 3 cut(s) 162, 249, 294
BstDEI CTNAG 3 cut(s) 111, 566, 612
BstF5I GGATG 5 cut(s) 19, 76, 139, 162, 622
BstFNI CGCG 1 cut(s) 173
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 166, 173
BstKTI GATC 3 cut(s) 389, 445, 545
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 386, 442, 542
BstMWI GCNNNNNNNGC 6 cut(s) 170, 244, 308, 314, 721, 724
BstNI CCWGG 2 cut(s) 531, 591
BstSCI CCNGG 3 cut(s) 281, 529, 589
BstSFI CTRYAG 2 cut(s) 41, 315
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 8 cut(s) 256, 301, 320, 407, 727, 730, 733, 736
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 3 cut(s) 375, 412, 688
BtsCI GGATG 5 cut(s) 19, 76, 139, 162, 622
BtsIMutI CAGTG 3 cut(s) 239, 427, 552
Cac8I GCNNGC 3 cut(s) 162, 249, 294
CaiI CAGNNNCTG 2 cut(s) 314, 401
CfoI GCGC 2 cut(s) 166, 173
Cfr10I RCCGGY 2 cut(s) 160, 292
Cfr13I GGNCC 2 cut(s) 37, 285
CseI GACGC 1 cut(s) 285
CviAII CATG 2 cut(s) 289, 496
DdeI CTNAG 3 cut(s) 111, 566, 612
DpnI GATC 3 cut(s) 388, 444, 544
DpnII GATC 3 cut(s) 386, 442, 542
EaeI YGGCCR 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 514, 689
Eco147I AGGCCT 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 37, 285
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 653, 691
EcoICRI GAGCTC 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 2 cut(s) 529, 589
EcoT14I CCWWGG 2 cut(s) 514, 689
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 2 cut(s) 514, 689
FaeI CATG 2 cut(s) 292, 499
FaiI YATR 6 cut(s) 50, 290, 378, 380, 497, 501
FaqI GGGAC 1 cut(s) 298
FatI CATG 2 cut(s) 288, 495
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 1 cut(s) 442
FokI GGATG 5 cut(s) 6, 83, 146, 169, 629
FriOI GRGCYC 1 cut(s) 107
FspBI CTAG 2 cut(s) 177, 690
GlaI GCGC 2 cut(s) 165, 172
GsuI CTGGAG 1 cut(s) 617
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 3 cut(s) 375, 412, 688
HapII CCGG 4 cut(s) 23, 161, 282, 293
HgaI GACGC 1 cut(s) 285
HhaI GCGC 2 cut(s) 166, 173
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 2 cut(s) 292, 499
Hin6I GCGC 2 cut(s) 164, 171
HinP1I GCGC 2 cut(s) 164, 171
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 1 cut(s) 320
HpaII CCGG 4 cut(s) 23, 161, 282, 293
HphI GGTGA 3 cut(s) 233, 491, 646
Hpy188I TCNGA 4 cut(s) 217, 334, 567, 672
Hpy188III TCNNGA 3 cut(s) 357, 596, 614
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 61, 715
HpyCH4III ACNGT 2 cut(s) 221, 258
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 5 cut(s) 56, 317, 395, 499, 682
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 244, 308, 314, 721, 724
HpyF3I CTNAG 3 cut(s) 111, 566, 612
HpySE526I ACGT 1 cut(s) 464
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 2 cut(s) 292, 499
HspAI GCGC 2 cut(s) 164, 171
KroI GCCGGC 2 cut(s) 160, 292
KroNI GCCGGC 2 cut(s) 162, 294
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 386, 442, 542
LmnI GCTCC 5 cut(s) 102, 110, 284, 532, 598
Lsp1109I GCAGC 8 cut(s) 256, 301, 320, 407, 727, 730, 733, 736
LweI GCATC 3 cut(s) 28, 147, 514
MaeI CTAG 2 cut(s) 177, 690
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 2 cut(s) 206, 620
MalI GATC 3 cut(s) 388, 444, 544
MboI GATC 3 cut(s) 386, 442, 542
MboII GAAGA 2 cut(s) 159, 659
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 8 cut(s) 200, 261, 448, 469, 490, 535, 637, 662
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 4 cut(s) 93, 334, 364, 678
Mox20I TGGCCA 1 cut(s) 375
Mph1103I ATGCAT 1 cut(s) 501
MroNI GCCGGC 2 cut(s) 160, 292
MscI TGGCCA 1 cut(s) 375
MseI TTAA 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 4 cut(s) 23, 161, 282, 293
MspR9I CCNGG 3 cut(s) 283, 531, 591
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 2 cut(s) 531, 591
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 6 cut(s) 170, 244, 308, 314, 721, 724
NaeI GCCGGC 2 cut(s) 162, 294
NciI CCSGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 378
NdeII GATC 3 cut(s) 386, 442, 542
NgoMIV GCCGGC 2 cut(s) 160, 292
NlaIII CATG 2 cut(s) 292, 499
NlaIV GGNNCC 3 cut(s) 280, 286, 703
NmuCI GTSAC 2 cut(s) 206, 620
NsiI ATGCAT 1 cut(s) 501
PceI AGGCCT 1 cut(s) 688
PdiI GCCGGC 2 cut(s) 162, 294
PfoI TCCNGGA 1 cut(s) 281
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 529, 589
PspGI CCWGG 2 cut(s) 529, 589
PspN4I GGNNCC 3 cut(s) 280, 286, 703
PspPI GGNCC 2 cut(s) 37, 285
PspPPI RGGWCCY 1 cut(s) 37
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 2 cut(s) 314, 401
PsuI RGATCY 1 cut(s) 386
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 362
Sau3AI GATC 3 cut(s) 386, 442, 542
Sau96I GGNCC 2 cut(s) 37, 285
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 3 cut(s) 283, 531, 591
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 3 cut(s) 28, 147, 514
SfcI CTRYAG 2 cut(s) 41, 315
SinI GGWCC 2 cut(s) 37, 285
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 8 cut(s) 200, 261, 448, 469, 490, 535, 637, 662
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 2 cut(s) 173, 311
SspMI CTAG 2 cut(s) 177, 690
SstI GAGCTC 1 cut(s) 107
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 3 cut(s) 281, 529, 589
StyI CCWWGG 2 cut(s) 514, 689
TaaI ACNGT 2 cut(s) 221, 258
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 737
TasI AATT 8 cut(s) 200, 261, 448, 469, 490, 535, 637, 662
TauI GCSGC 2 cut(s) 176, 314
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 3 cut(s) 239, 427, 552
TseFI GTSAC 2 cut(s) 206, 620
TseI GCWGC 8 cut(s) 269, 308, 314, 395, 715, 718, 721, 724
Tsp45I GTSAC 2 cut(s) 206, 620
TspDTI ATGAA 2 cut(s) 87, 484
TspRI CASTG 3 cut(s) 239, 427, 552
VpaK11BI GGWCC 2 cut(s) 37, 285
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 3 cut(s) 469, 490, 637
XmaJI CCTAGG 1 cut(s) 689
XspI CTAG 2 cut(s) 177, 690
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.