Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Forward (+)

174117 .. 175642

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1002500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATCCCAAGGGCTCAAAGCAGACACAAGACATACCTAGCTTCTTGAGCCTCCCCCCACAACCTCAGCAGCAGCAGCAGCAACCACCACCTCAACCCAACAACAACATGAACGACGACAAACCTGCTGAAATCAAAGACTTCCAGATTGTAATCGCTGACAAAGACGAGTCGGGGAAGAAGCAGTTGGCGCCCAAGAGAAGCTCCAACAAAGACAGACACACAAAGGTCGAAGGCAGGGGAAGGAGGATACGGATGCCGGCCCTCTGCGCCGCCAGAATATTTCAATTGACCCGAGAGTTGGGTCACAAATCCGATGGGGAAACAATCCAGTGGCTCCTCCAGCAGGCCGAGCCGTCGATTATGGCCGCCACCGGGACCGGGACGATTCCGGCGTCGGCTTTGGCCGCGGCAGGGGGCTCTGTTTCGCAACAGGGGACTTCTCTATCAGCTGGATTGCACCAAAAGATCGATGAATTGGGGGGGTCCAGTGGAGGTAGGACCAGCTGGGCAATGGTGGGCGGGAATTTGGGGAGACCCCATGTGGCAGGGGTGGGCGGGCTATGGCCCCCTGTCAGTAGCTTTGGGTTCCAGTCGTCATCTGGTCCTCCATCAGCCACCACAAATCTGGGCAGTGAGAGTTCAAATTACCTGCAAAAAATTGGGTTTCCTGGCTTTGACTTGCCTGTCTCTAACATGGGTCCGATGAGTTTTACTTCAATTTTGGGTGGGGGCAATCAGCAGCAGCAGCAGCTTCCTGGGTTGGAACTTGGGTTGTCACAGGATGGACATATTGGGGTCCTGAACTCACAGGCTTTGAGTCAGATTTACCAGCAGATGGGGCATGCTAGAGTGCACCAGCAGCCGCCGCAGCACCACCAGCAGCAACACCACCACCACCACCAGCAACCACCTTCCAAGGACGATTCTCAAGGCTCTGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

316

Amino Acids

33.62

Weight (kDa)

8.68

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	69 - 272	7.7e-27	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	686
Acc36I	ACCTGC	2 cut(s)	133, 660
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccII	CGCG	1 cut(s)	410
AciI	CCGC	8 cut(s)	273, 369, 408, 410, 522, 558, 866, 869
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	366, 405
AcsI	RAATTY	1 cut(s)	526
AcyI	GRCGYC	2 cut(s)	191, 395
AfiI	CCNNNNNNNGG	6 cut(s)	301, 346, 375, 381, 414, 838
AgsI	TTSAA	3 cut(s)	287, 645, 720
AjnI	CCWGG	2 cut(s)	670, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	42, 204, 452, 507, 582, 754
AluI	AGCT	6 cut(s)	42, 204, 452, 507, 582, 754
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	2 cut(s)	529, 694
Alw44I	GTGCAC	1 cut(s)	854
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	5 cut(s)	261, 348, 366, 405, 566
ApaLI	GTGCAC	1 cut(s)	854
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	193, 272
AspS9I	GGNCC	8 cut(s)	262, 378, 486, 501, 567, 605, 701, 799
AsuC2I	CCSGG	2 cut(s)	376, 382
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	6 cut(s)	378, 486, 501, 605, 701, 799
BaeGI	GKGCMC	1 cut(s)	858
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	17, 422
Bbv12I	GWGCWC	1 cut(s)	858
BbvCI	CCTCAGC	1 cut(s)	66
BccI	CCATC	4 cut(s)	311, 619, 779, 832
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	2 cut(s)	672, 759
BciVI	GTATCC	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	376, 382
BcoDI	GTCTC	2 cut(s)	529, 694
BfaI	CTAG	2 cut(s)	39, 849
BfoI	RGCGCY	1 cut(s)	194
BfuAI	ACCTGC	2 cut(s)	133, 660
BfuI	GTATCC	1 cut(s)	243
Bme1390I	CCNGG	4 cut(s)	376, 382, 672, 759
Bme18I	GGWCC	6 cut(s)	378, 486, 501, 605, 701, 799
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	8 cut(s)	262, 378, 486, 501, 567, 605, 701, 799
BmiI	GGNNCC	9 cut(s)	6, 192, 338, 379, 487, 569, 590, 702, 800
BmrFI	CCNGG	4 cut(s)	376, 382, 672, 759
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	67, 915
BpuMI	CCSGG	2 cut(s)	376, 382
Bsa29I	ATCGAT	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	191, 395
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	4 cut(s)	9, 408, 758, 918
Bsc4I	CCNNNNNNNGG	6 cut(s)	301, 346, 375, 381, 414, 838
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	331, 489, 592
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	672, 759
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	9, 408, 758, 918
BseGI	GGATG	2 cut(s)	261, 790
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	6 cut(s)	301, 346, 375, 381, 414, 838
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	3 cut(s)	331, 489, 592
BseRI	GAGGAG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	858
BseYI	CCCAGC	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	5 cut(s)	263, 350, 368, 407, 568
BshNI	GGYRCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	858
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	4 cut(s)	260, 375, 381, 392
BslFI	GGGAC	3 cut(s)	391, 397, 451
BslI	CCNNNNNNNGG	6 cut(s)	301, 346, 375, 381, 414, 838
BsmAI	GTCTC	2 cut(s)	529, 694
BsmFI	GGGAC	3 cut(s)	391, 397, 451
BsnI	GGCC	5 cut(s)	263, 350, 368, 407, 568
Bso31I	GGTCTC	1 cut(s)	529
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	17, 422, 858
Bsp143I	GATC	2 cut(s)	4, 468
BspACI	CCGC	8 cut(s)	273, 369, 408, 410, 522, 558, 866, 869
BspANI	GGCC	5 cut(s)	263, 350, 368, 407, 568
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	9 cut(s)	6, 192, 338, 379, 487, 569, 590, 702, 800
BspMI	ACCTGC	2 cut(s)	133, 660
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	3 cut(s)	331, 489, 592
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	9, 408, 758, 918
BssMI	GATC	2 cut(s)	4, 468
BssNI	GRCGYC	2 cut(s)	191, 395
BssT1I	CCWWGG	2 cut(s)	9, 918
Bst2UI	CCWGG	2 cut(s)	672, 759
Bst4CI	ACNGT	1 cut(s)	945
BstACI	GRCGYC	2 cut(s)	191, 395
BstC8I	GCNNGC	4 cut(s)	261, 348, 560, 846
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	261, 790
BstFNI	CGCG	1 cut(s)	410
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	193, 272
BstKTI	GATC	2 cut(s)	7, 471
BstMAI	GTCTC	2 cut(s)	529, 694
BstMBI	GATC	2 cut(s)	4, 468
BstNI	CCWGG	2 cut(s)	672, 759
BstNSI	RCATGY	1 cut(s)	848
BstSCI	CCNGG	4 cut(s)	374, 380, 670, 757
BstSLI	GKGCMC	1 cut(s)	858
BstUI	CGCG	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	5 cut(s)	263, 350, 368, 407, 568
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	261, 790
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	3 cut(s)	338, 496, 640
BveI	ACCTGC	2 cut(s)	133, 660
Cac8I	GCNNGC	4 cut(s)	261, 348, 560, 846
CfoI	GCGC	2 cut(s)	193, 272
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	8 cut(s)	262, 378, 486, 501, 567, 605, 701, 799
Cfr42I	CCGCGG	1 cut(s)	411
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	1 cut(s)	384
CviAII	CATG	4 cut(s)	109, 542, 697, 845
DdeI	CTNAG	1 cut(s)	66
DinI	GGCGCC	1 cut(s)	192
DpnI	GATC	2 cut(s)	6, 470
DpnII	GATC	2 cut(s)	4, 468
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	2 cut(s)	366, 405
Eco130I	CCWWGG	2 cut(s)	9, 918
Eco24I	GRGCYC	2 cut(s)	17, 422
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	6 cut(s)	378, 486, 501, 605, 701, 799
Eco88I	CYCGRG	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	799
EcoRII	CCWGG	2 cut(s)	670, 757
EcoT14I	CCWWGG	2 cut(s)	9, 918
EcoT38I	GRGCYC	2 cut(s)	17, 422
EgeI	GGCGCC	1 cut(s)	192
EheI	GGCGCC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	9, 918
FaeI	CATG	4 cut(s)	112, 545, 700, 848
FaiI	YATR	8 cut(s)	35, 110, 365, 543, 565, 698, 792, 846
FaqI	GGGAC	3 cut(s)	391, 397, 451
FatI	CATG	4 cut(s)	108, 541, 696, 844
FauI	CCCGC	2 cut(s)	515, 551
FokI	GGATG	2 cut(s)	268, 797
FriOI	GRGCYC	2 cut(s)	17, 422
FspBI	CTAG	2 cut(s)	39, 849
GlaI	GCGC	2 cut(s)	192, 271
GsaI	CCCAGC	1 cut(s)	511
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	5 cut(s)	263, 350, 368, 407, 568
HapII	CCGG	4 cut(s)	260, 375, 381, 392
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	2 cut(s)	193, 272
Hin1I	GRCGYC	2 cut(s)	191, 395
Hin1II	CATG	4 cut(s)	112, 545, 700, 848
Hin6I	GCGC	2 cut(s)	191, 270
HinP1I	GCGC	2 cut(s)	191, 270
HinfI	GANTC	4 cut(s)	170, 388, 820, 926
HpaII	CCGG	4 cut(s)	260, 375, 381, 392
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	3 cut(s)	316, 705, 825
Hpy188III	TCNNGA	4 cut(s)	46, 145, 802, 939
Hpy8I	GTNNAC	1 cut(s)	856
Hpy99I	CGWCG	3 cut(s)	119, 361, 400
HpyAV	CCTTC	3 cut(s)	227, 237, 924
HpyCH4III	ACNGT	1 cut(s)	945
HpyCH4V	TGCA	3 cut(s)	460, 655, 856
HpyF3I	CTNAG	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	191, 395
Hsp92II	CATG	4 cut(s)	112, 545, 700, 848
HspAI	GCGC	2 cut(s)	191, 270
KasI	GGCGCC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
KspI	CCGCGG	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	4, 468
LmnI	GCTCC	2 cut(s)	209, 342
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	39, 849
MaeIII	GTNAC	2 cut(s)	305, 777
MalI	GATC	2 cut(s)	6, 470
MboI	GATC	2 cut(s)	4, 468
MboII	GAAGA	1 cut(s)	190
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	17, 422, 858
MluCI	AATT	6 cut(s)	287, 476, 526, 646, 660, 720
Mly113I	GGCGCC	1 cut(s)	191
MlyI	GAGTC	2 cut(s)	179, 829
MmeI	TCCRAC	2 cut(s)	231, 744
MnlI	CCTC	8 cut(s)	62, 75, 102, 240, 275, 350, 488, 618
MroNI	GCCGGC	1 cut(s)	259
MspA1I	CMGCKG	3 cut(s)	410, 452, 507
MspI	CCGG	4 cut(s)	260, 375, 381, 392
MspR9I	CCNGG	4 cut(s)	376, 382, 672, 759
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	672, 759
MvnI	CGCG	1 cut(s)	410
NaeI	GCCGGC	1 cut(s)	261
NarI	GGCGCC	1 cut(s)	191
NciI	CCSGG	2 cut(s)	376, 382
NdeII	GATC	2 cut(s)	4, 468
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	4 cut(s)	112, 545, 700, 848
NlaIV	GGNNCC	9 cut(s)	6, 192, 338, 379, 487, 569, 590, 702, 800
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	305, 777
NspI	RCATGY	1 cut(s)	848
PaeI	GCATGC	1 cut(s)	848
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	388, 926
PflMI	CCANNNNNTGG	1 cut(s)	838
PleI	GAGTC	2 cut(s)	178, 828
PluTI	GGCGCC	1 cut(s)	194
PpsI	GAGTC	2 cut(s)	178, 828
PpuMI	RGGWCCY	1 cut(s)	799
Psp5II	RGGWCCY	1 cut(s)	799
Psp6I	CCWGG	2 cut(s)	670, 757
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	2 cut(s)	670, 757
PspN4I	GGNNCC	9 cut(s)	6, 192, 338, 379, 487, 569, 590, 702, 800
PspPI	GGNCC	8 cut(s)	262, 378, 486, 501, 567, 605, 701, 799
PspPPI	RGGWCCY	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	452, 507
SacII	CCGCGG	1 cut(s)	411
Sau3AI	GATC	2 cut(s)	4, 468
Sau96I	GGNCC	8 cut(s)	262, 378, 486, 501, 567, 605, 701, 799
SchI	GAGTC	2 cut(s)	179, 829
ScrFI	CCNGG	4 cut(s)	376, 382, 672, 759
SduI	GDGCHC	3 cut(s)	17, 422, 858
SfaNI	GCATC	1 cut(s)	246
SfoI	GGCGCC	1 cut(s)	192
Sfr303I	CCGCGG	1 cut(s)	411
SgrBI	CCGCGG	1 cut(s)	411
SinI	GGWCC	6 cut(s)	378, 486, 501, 605, 701, 799
SmlI	CTYRAG	2 cut(s)	46, 930
SmoI	CTYRAG	2 cut(s)	46, 930
SphI	GCATGC	1 cut(s)	848
Sse9I	AATT	6 cut(s)	287, 476, 526, 646, 660, 720
SsiI	CCGC	8 cut(s)	273, 369, 408, 410, 522, 558, 866, 869
SspDI	GGCGCC	1 cut(s)	190
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	39, 849
StyD4I	CCNGG	4 cut(s)	374, 380, 670, 757
StyI	CCWWGG	2 cut(s)	9, 918
TaaI	ACNGT	1 cut(s)	945
TaqI	TCGA	3 cut(s)	231, 359, 471
TasI	AATT	6 cut(s)	287, 476, 526, 646, 660, 720
TauI	GCSGC	6 cut(s)	275, 371, 410, 413, 868, 871
TfiI	GAWTC	2 cut(s)	388, 926
TscAI	CASTG	3 cut(s)	338, 496, 640
TseFI	GTSAC	2 cut(s)	305, 777
Tsp45I	GTSAC	2 cut(s)	305, 777
TspDTI	ATGAA	2 cut(s)	125, 489
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	3 cut(s)	338, 496, 640
Van91I	CCANNNNNTGG	1 cut(s)	838
VneI	GTGCAC	1 cut(s)	854
VpaK11BI	GGWCC	6 cut(s)	378, 486, 501, 605, 701, 799
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	3 cut(s)	511, 599, 625
XspI	CTAG	2 cut(s)	39, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.