pycom17g00690
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007171
Physical Location & Seq
Reverse (-)
477545 .. 478471
927 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00690.1

Sequence Viewer

Length: 927 bp
ATGGATCCCAAGGGCTCAAAGCAGACACAAGACATACCTAGCTTCTTGAGCCTCCCCCCACAACCTCAGCAGCAGCAACCACCACCTCAACCCAACAGCAACATGAACGACGACAAACCTGCTGAAATCAAAGACTTCCAGATTGTAATCGCTGACAAAGACGAGTCGGGGAAGAAGCAGTTGGCGCCCAAGAGAAGCTCCAACAAAGACAGACACACAAAGGTCGAAGGCAGGGGAAGGAGGATACGGATGCCGGCCCTCTGCGCCGCCAGAATCTTTCAATTGACCCGAGAGTTGGGTCACAAATCCGATGGGGAAACAATCCAGTGGCTCCTCCAGCAGGCCGAGCCGTCGATTATGGCCGCCACTGGGACCGGGACGATTCCGGCGTCGGCTTTGGCCGCGGCAGGGGGCTCTGTTTCGCAACAGGGGACTTCTTTATCAGCTGGATTGCACCAAAAGATCGATGAATTGGGGGGGTCCAGTGGAGGTAGGACCAGCTGGGCAATGGTGGGCGGGAATTTGGGGAGACCCCATGTGGCAGGGGTGGGCGGGCTATGGCCCCCTGTCAGTAGCTTTGGGTTCCAGTCATCATCTGGTCCTCCATCAGCCACCACAAATCTGGGCAGTGAGAGTTCAAATTACCTGCAAAAAATTGGGTTTCCTGGCTTTGACTTGCCTGTCTCTAACAATGGTCCGATGAGTTTTACTTCAATTTTGGGTGGGGGCAATCAGCAGCAGCAGCAGCTTCCTGGGTTGGAACTTGGGTTGTCACAGGATGGACATATTGGGGTCCTGAACTCACAGGCTTTGAGTCAGATTTACCAGCAGATGGGGCATGCTAGAGTGCACCAGCAGCCGCCGCAGCACCACCACCACCACCAGCAACCGCCTTCCAAGGACGATTCTCAAGGCTCTGGACAGTAG

Protein Analysis

309

Amino Acids

32.66

Weight (kDa)

8.67

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 67 - 148 5e-27 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 680
Acc36I ACCTGC 2 cut(s) 127, 654
AccB1I GGYRCC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 832
AccII CGCG 1 cut(s) 404
AciI CCGC 9 cut(s) 267, 363, 402, 404, 516, 552, 860, 863, 890
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 360, 399
AcsI RAATTY 1 cut(s) 520
AcyI GRCGYC 2 cut(s) 185, 389
AfiI CCNNNNNNNGG 5 cut(s) 295, 340, 369, 408, 832
AgsI TTSAA 3 cut(s) 281, 639, 714
AjnI CCWGG 2 cut(s) 664, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 6 cut(s) 42, 198, 446, 501, 576, 748
AluI AGCT 6 cut(s) 42, 198, 446, 501, 576, 748
Alw21I GWGCWC 1 cut(s) 852
Alw26I GTCTC 2 cut(s) 523, 688
Alw44I GTGCAC 1 cut(s) 848
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 5 cut(s) 255, 342, 360, 399, 560
ApaLI GTGCAC 1 cut(s) 848
ApeKI GCWGC 8 cut(s) 70, 73, 736, 739, 742, 745, 856, 865
ApoI RAATTY 1 cut(s) 520
AspLEI GCGC 2 cut(s) 187, 266
AspS9I GGNCC 8 cut(s) 256, 372, 480, 495, 561, 599, 695, 793
AsuC2I CCSGG 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 288
AvaII GGWCC 6 cut(s) 372, 480, 495, 599, 695, 793
BaeGI GKGCMC 1 cut(s) 852
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 17, 416
Bbv12I GWGCWC 1 cut(s) 852
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 8 cut(s) 82, 85, 748, 751, 754, 757, 868, 877
BccI CCATC 4 cut(s) 305, 613, 773, 826
BceAI ACGGC 1 cut(s) 334
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 2 cut(s) 666, 753
BciVI GTATCC 1 cut(s) 237
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 523, 688
BfaI CTAG 2 cut(s) 39, 843
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 2 cut(s) 127, 654
BfuI GTATCC 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 376, 666, 753
Bme18I GGWCC 6 cut(s) 372, 480, 495, 599, 695, 793
BmeT110I CYCGRG 1 cut(s) 288
BmgT120I GGNCC 8 cut(s) 256, 372, 480, 495, 561, 599, 695, 793
BmiI GGNNCC 8 cut(s) 6, 186, 332, 373, 481, 563, 584, 794
BmrFI CCNGG 3 cut(s) 376, 666, 753
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 66
BpuEI CTTGAG 2 cut(s) 67, 894
BpuMI CCSGG 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 146
BsaHI GRCGYC 2 cut(s) 185, 389
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 4 cut(s) 9, 402, 752, 897
Bsc4I CCNNNNNNNGG 5 cut(s) 295, 340, 369, 408, 832
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 4 cut(s) 325, 373, 483, 586
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 2 cut(s) 666, 753
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 4 cut(s) 9, 402, 752, 897
BseGI GGATG 2 cut(s) 255, 784
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 5 cut(s) 295, 340, 369, 408, 832
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 4 cut(s) 325, 373, 483, 586
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 852
BseXI GCAGC 8 cut(s) 82, 85, 748, 751, 754, 757, 868, 877
BseYI CCCAGC 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 5 cut(s) 257, 344, 362, 401, 562
BshNI GGYRCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 852
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 3 cut(s) 254, 375, 386
BslFI GGGAC 3 cut(s) 385, 391, 445
BslI CCNNNNNNNGG 5 cut(s) 295, 340, 369, 408, 832
BsmAI GTCTC 2 cut(s) 523, 688
BsmFI GGGAC 3 cut(s) 385, 391, 445
BsnI GGCC 5 cut(s) 257, 344, 362, 401, 562
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 1 cut(s) 288
Bsp1286I GDGCHC 3 cut(s) 17, 416, 852
Bsp143I GATC 2 cut(s) 4, 462
BspACI CCGC 9 cut(s) 267, 363, 402, 404, 516, 552, 860, 863, 890
BspANI GGCC 5 cut(s) 257, 344, 362, 401, 562
BspCNI CTCAG 1 cut(s) 79
BspDI ATCGAT 1 cut(s) 465
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 8 cut(s) 6, 186, 332, 373, 481, 563, 584, 794
BspMI ACCTGC 2 cut(s) 127, 654
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 4 cut(s) 325, 373, 483, 586
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 4 cut(s) 9, 402, 752, 897
BssMI GATC 2 cut(s) 4, 462
BssNI GRCGYC 2 cut(s) 185, 389
BssT1I CCWWGG 2 cut(s) 9, 897
Bst2UI CCWGG 2 cut(s) 666, 753
Bst4CI ACNGT 1 cut(s) 924
BstACI GRCGYC 2 cut(s) 185, 389
BstC8I GCNNGC 4 cut(s) 255, 342, 554, 840
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 255, 784
BstFNI CGCG 1 cut(s) 404
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 2 cut(s) 187, 266
BstKTI GATC 2 cut(s) 7, 465
BstMAI GTCTC 2 cut(s) 523, 688
BstMBI GATC 2 cut(s) 4, 462
BstNI CCWGG 2 cut(s) 666, 753
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 3 cut(s) 374, 664, 751
BstSLI GKGCMC 1 cut(s) 852
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 8 cut(s) 82, 85, 748, 751, 754, 757, 868, 877
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 622
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 465
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 5 cut(s) 257, 344, 362, 401, 562
BsuTUI ATCGAT 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 255, 784
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 4 cut(s) 332, 366, 490, 634
BveI ACCTGC 2 cut(s) 127, 654
Cac8I GCNNGC 4 cut(s) 255, 342, 554, 840
CfoI GCGC 2 cut(s) 187, 266
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 8 cut(s) 256, 372, 480, 495, 561, 599, 695, 793
Cfr42I CCGCGG 1 cut(s) 405
ClaI ATCGAT 1 cut(s) 465
CseI GACGC 1 cut(s) 378
CviAII CATG 3 cut(s) 103, 536, 839
DdeI CTNAG 1 cut(s) 66
DinI GGCGCC 1 cut(s) 186
DpnI GATC 2 cut(s) 6, 464
DpnII GATC 2 cut(s) 4, 462
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 2 cut(s) 360, 399
Eco130I CCWWGG 2 cut(s) 9, 897
Eco24I GRGCYC 2 cut(s) 17, 416
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 6 cut(s) 372, 480, 495, 599, 695, 793
Eco88I CYCGRG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 664, 751
EcoT14I CCWWGG 2 cut(s) 9, 897
EcoT38I GRGCYC 2 cut(s) 17, 416
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 2 cut(s) 9, 897
FaeI CATG 3 cut(s) 106, 539, 842
FaiI YATR 7 cut(s) 35, 104, 359, 537, 559, 786, 840
FaqI GGGAC 3 cut(s) 385, 391, 445
FatI CATG 3 cut(s) 102, 535, 838
FauI CCCGC 2 cut(s) 509, 545
FokI GGATG 2 cut(s) 262, 791
FriOI GRGCYC 2 cut(s) 17, 416
FspBI CTAG 2 cut(s) 39, 843
GlaI GCGC 2 cut(s) 186, 265
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 5 cut(s) 257, 344, 362, 401, 562
HapII CCGG 3 cut(s) 254, 375, 386
HgaI GACGC 1 cut(s) 378
HhaI GCGC 2 cut(s) 187, 266
Hin1I GRCGYC 2 cut(s) 185, 389
Hin1II CATG 3 cut(s) 106, 539, 842
Hin6I GCGC 2 cut(s) 185, 264
HinP1I GCGC 2 cut(s) 185, 264
HinfI GANTC 5 cut(s) 164, 273, 382, 814, 905
HpaII CCGG 3 cut(s) 254, 375, 386
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 3 cut(s) 310, 699, 819
Hpy188III TCNNGA 4 cut(s) 46, 139, 796, 918
Hpy8I GTNNAC 1 cut(s) 850
Hpy99I CGWCG 3 cut(s) 113, 355, 394
HpyAV CCTTC 3 cut(s) 221, 231, 903
HpyCH4III ACNGT 1 cut(s) 924
HpyCH4V TGCA 3 cut(s) 454, 649, 850
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 2 cut(s) 185, 389
Hsp92II CATG 3 cut(s) 106, 539, 842
HspAI GCGC 2 cut(s) 185, 264
KasI GGCGCC 1 cut(s) 184
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
KspI CCGCGG 1 cut(s) 405
Kzo9I GATC 2 cut(s) 4, 462
LmnI GCTCC 2 cut(s) 203, 336
Lsp1109I GCAGC 8 cut(s) 82, 85, 748, 751, 754, 757, 868, 877
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 39, 843
MaeIII GTNAC 2 cut(s) 299, 771
MalI GATC 2 cut(s) 6, 464
MboI GATC 2 cut(s) 4, 462
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 17, 416, 852
MluCI AATT 6 cut(s) 281, 470, 520, 640, 654, 714
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 2 cut(s) 173, 823
MmeI TCCRAC 2 cut(s) 225, 738
MnlI CCTC 8 cut(s) 62, 75, 96, 234, 269, 344, 482, 612
MroNI GCCGGC 1 cut(s) 253
MspA1I CMGCKG 3 cut(s) 404, 446, 501
MspI CCGG 3 cut(s) 254, 375, 386
MspR9I CCNGG 3 cut(s) 376, 666, 753
MunI CAATTG 1 cut(s) 281
MvaI CCWGG 2 cut(s) 666, 753
MvnI CGCG 1 cut(s) 404
NaeI GCCGGC 1 cut(s) 255
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 1 cut(s) 376
NdeII GATC 2 cut(s) 4, 462
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 3 cut(s) 106, 539, 842
NlaIV GGNNCC 8 cut(s) 6, 186, 332, 373, 481, 563, 584, 794
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 299, 771
NspI RCATGY 1 cut(s) 842
PaeI GCATGC 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 273, 382, 905
PflMI CCANNNNNTGG 1 cut(s) 832
PleI GAGTC 2 cut(s) 172, 822
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 2 cut(s) 172, 822
PpuMI RGGWCCY 1 cut(s) 793
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 2 cut(s) 664, 751
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 2 cut(s) 664, 751
PspN4I GGNNCC 8 cut(s) 6, 186, 332, 373, 481, 563, 584, 794
PspPI GGNCC 8 cut(s) 256, 372, 480, 495, 561, 599, 695, 793
PspPPI RGGWCCY 1 cut(s) 793
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 446, 501
SacII CCGCGG 1 cut(s) 405
Sau3AI GATC 2 cut(s) 4, 462
Sau96I GGNCC 8 cut(s) 256, 372, 480, 495, 561, 599, 695, 793
SchI GAGTC 2 cut(s) 173, 823
ScrFI CCNGG 3 cut(s) 376, 666, 753
SduI GDGCHC 3 cut(s) 17, 416, 852
SfaNI GCATC 1 cut(s) 240
SfoI GGCGCC 1 cut(s) 186
Sfr303I CCGCGG 1 cut(s) 405
SgrBI CCGCGG 1 cut(s) 405
SinI GGWCC 6 cut(s) 372, 480, 495, 599, 695, 793
SmlI CTYRAG 2 cut(s) 46, 909
SmoI CTYRAG 2 cut(s) 46, 909
SphI GCATGC 1 cut(s) 842
Sse9I AATT 6 cut(s) 281, 470, 520, 640, 654, 714
SsiI CCGC 9 cut(s) 267, 363, 402, 404, 516, 552, 860, 863, 890
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 2 cut(s) 39, 843
StyD4I CCNGG 3 cut(s) 374, 664, 751
StyI CCWWGG 2 cut(s) 9, 897
TaaI ACNGT 1 cut(s) 924
TaqI TCGA 3 cut(s) 225, 353, 465
TasI AATT 6 cut(s) 281, 470, 520, 640, 654, 714
TauI GCSGC 6 cut(s) 269, 365, 404, 407, 862, 865
TfiI GAWTC 3 cut(s) 273, 382, 905
TscAI CASTG 4 cut(s) 332, 373, 490, 634
TseFI GTSAC 2 cut(s) 299, 771
TseI GCWGC 8 cut(s) 70, 73, 736, 739, 742, 745, 856, 865
Tsp45I GTSAC 2 cut(s) 299, 771
TspDTI ATGAA 2 cut(s) 119, 483
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 4 cut(s) 332, 373, 490, 634
Van91I CCANNNNNTGG 1 cut(s) 832
VneI GTGCAC 1 cut(s) 848
VpaK11BI GGWCC 6 cut(s) 372, 480, 495, 599, 695, 793
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 520
XceI RCATGY 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 3 cut(s) 505, 593, 619
XspI CTAG 2 cut(s) 39, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.