Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007171

Physical Location & Seq

Genomic Coordinates Forward (+)

39395212 .. 39397582

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53830.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGTGAGAACAACAACAACAACAATCACAACCACAACAACAACAACAACGTTGTGAAACCGGCGGAGATCAAAGACTTCCAGATTGTGGTTGCGGACAAAGACGAAACCAAGAAGCAGTTGGCGCCCAAACGTAGCTCAAACAAAGACAGACACACCAAAGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCGGCTCTCTGCGCCGCCAGAATCTTCCAATTGACTCGGGAATTGGGCCACAAATCGGACGGAGAAACAATCCAATGGCTGCTGCAGCAGGCTGAGCCGTCCATAATTGCAACCACCGGCACCGGGACGATCCCGGCGTCGGCTCTAGCGGCGGCAGGAGGGTCTGTATCGCAGCAGGGGAGTTCAATATCAGCTGGCTTGTATCAAAAGACAGATGATTTAGGGTCCAGTGGAGGTAGGACCAGTTGGGCTATGGTGGGAGGGAATTTAGGGAGGCCCCATGTGGCTGCAGCAACTGGGCTATGGCCCCCTGCTGGGTTTGGTTTTTCTTCACAGTCATCTTCATCTGGTCCATCTACTACAAATCTGGGAGGGACTGAGAGCAGCTCCAATTACCTCCAAAAGATTGGCCTTCCTGGGTTTGACTTGCCAGTCACCAACATGGGACCTATGAGCTTCACTTCAATTCTGGGGTGGGGAAGTCAACAGCTGCCTGGTTTGGAACTTGGGTTGTCTCAAGATGGCCATCTTGGGGTTTTGAATTCTCAGGCTTACCAGATTTACCAGCAGATGGGCCATGCTAGAGTGCACCACCATCAACAGCAGCAACAGCAACACCACCAGCAGCAGCACCAACACCAGCAACAGCAGCAAGCTCCGTCTTCTAAGGATGATTCTCAAGGCTCAGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

296

Amino Acids

31.62

Weight (kDa)

9.02

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	85 - 322	2.1e-27	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27010 AT3G27010
fragaria_vesca	FvH4_6g53830 FvH4_6g53830
malus_domestica	MD09G1008300.v1.1 MD13G1122900.v1.1 MD17G1002500.v1.1
prunus_persica	Prupe.1G222000_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1 Prupe.3G308700_v2.0.a1
pyrus_communis	pycom111g00660 pycom13g10730 pycom17g00690
rosa_chinensis	RchiOBHm_Chr2g0175971
rosa_laevigata	RLG00000022369
rosa_multiflora	Rmu_sc0018801.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076900
rosa_rugosa	Rorug02G0589100
rosa_samantha	Rh2AG668200 Rh2BG679700 Rh2CG642600 Rh2DG693400
rosa_wichuraiana	Rw2G054780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	623
AccB1I	GGYRCC	2 cut(s)	124, 311
AccB7I	CCANNNNNTGG	2 cut(s)	88, 763
AciI	CCGC	5 cut(s)	65, 95, 207, 341, 344
AclI	AACGTT	1 cut(s)	51
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	2 cut(s)	457, 733
AcyI	GRCGYC	2 cut(s)	125, 329
AfiI	CCNNNNNNNGG	8 cut(s)	88, 247, 315, 331, 506, 507, 724, 763
AgsI	TTSAA	3 cut(s)	378, 657, 733
AjnI	CCWGG	2 cut(s)	607, 685
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	6 cut(s)	138, 386, 579, 648, 682, 848
AluI	AGCT	6 cut(s)	138, 386, 579, 648, 682, 848
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	1 cut(s)	711
Alw44I	GTGCAC	1 cut(s)	779
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	6 cut(s)	238, 467, 497, 601, 715, 766
ApaLI	GTGCAC	1 cut(s)	779
ApoI	RAATTY	2 cut(s)	457, 733
AspLEI	GCGC	2 cut(s)	127, 206
AspS9I	GGNCC	8 cut(s)	238, 417, 432, 468, 498, 542, 638, 766
AsuC2I	CCSGG	2 cut(s)	316, 326
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	4 cut(s)	417, 432, 542, 638
BaeGI	GKGCMC	1 cut(s)	783
BalI	TGGCCA	1 cut(s)	717
BanI	GGYRCC	2 cut(s)	124, 311
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	783
BccI	CCATC	5 cut(s)	553, 707, 726, 757, 795
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	609, 687
BcnI	CCSGG	2 cut(s)	316, 326
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	2 cut(s)	338, 774
BfmI	CTRYAG	2 cut(s)	275, 480
BfoI	RGCGCY	1 cut(s)	128
BlpI	GCTNAGC	1 cut(s)	285
Bme1390I	CCNGG	4 cut(s)	316, 326, 609, 687
Bme18I	GGWCC	4 cut(s)	417, 432, 542, 638
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	8 cut(s)	238, 417, 432, 468, 498, 542, 638, 766
BmiI	GGNNCC	6 cut(s)	126, 313, 418, 470, 500, 639
BmrFI	CCNGG	4 cut(s)	316, 326, 609, 687
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	846
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
Bpu10I	CCTNAGC	1 cut(s)	877
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	693, 855
BpuMI	CCSGG	2 cut(s)	316, 326
BsaBI	GATNNNNATC	1 cut(s)	717
BsaHI	GRCGYC	2 cut(s)	125, 329
BsaJI	CCNNGG	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	8 cut(s)	88, 247, 315, 331, 506, 507, 724, 763
Bse118I	RCCGGY	3 cut(s)	61, 193, 308
Bse1I	ACTGG	4 cut(s)	420, 435, 493, 623
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	609, 687
BseDI	CCNNGG	1 cut(s)	608
BseGI	GGATG	2 cut(s)	195, 868
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	8 cut(s)	88, 247, 315, 331, 506, 507, 724, 763
BseMII	CTCAG	3 cut(s)	276, 561, 752
BseNI	ACTGG	4 cut(s)	420, 435, 493, 623
BseSI	GKGCMC	1 cut(s)	783
BseYI	CCCAGC	1 cut(s)	506
BshFI	GGCC	6 cut(s)	240, 469, 499, 603, 717, 768
BshNI	GGYRCC	2 cut(s)	124, 311
BsiHKAI	GWGCWC	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	5 cut(s)	62, 194, 309, 315, 326
BslFI	GGGAC	3 cut(s)	331, 580, 651
BslI	CCNNNNNNNGG	8 cut(s)	88, 247, 315, 331, 506, 507, 724, 763
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	3 cut(s)	331, 580, 651
BsnI	GGCC	6 cut(s)	240, 469, 499, 603, 717, 768
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	2 cut(s)	69, 321
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	5 cut(s)	65, 95, 207, 341, 344
BspANI	GGCC	6 cut(s)	240, 469, 499, 603, 717, 768
BspCNI	CTCAG	3 cut(s)	277, 562, 751
BspLI	GGNNCC	6 cut(s)	126, 313, 418, 470, 500, 639
BspMAI	CTGCAG	2 cut(s)	279, 484
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	2 cut(s)	124, 311
BsrFI	RCCGGY	3 cut(s)	61, 193, 308
BsrI	ACTGG	4 cut(s)	420, 435, 493, 623
BssAI	RCCGGY	3 cut(s)	61, 193, 308
BssECI	CCNNGG	1 cut(s)	608
BssMI	GATC	2 cut(s)	69, 321
BssNI	GRCGYC	2 cut(s)	125, 329
Bst2UI	CCWGG	2 cut(s)	609, 687
Bst4CI	ACNGT	2 cut(s)	528, 885
BstACI	GRCGYC	2 cut(s)	125, 329
BstC8I	GCNNGC	4 cut(s)	195, 282, 388, 846
BstDEI	CTNAG	5 cut(s)	285, 570, 738, 858, 877
BstF5I	GGATG	2 cut(s)	195, 868
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	127, 206
BstKTI	GATC	2 cut(s)	72, 324
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	2 cut(s)	69, 321
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 203, 277, 286, 341, 802, 841
BstNI	CCWGG	2 cut(s)	609, 687
BstSCI	CCNGG	4 cut(s)	314, 324, 607, 685
BstSFI	CTRYAG	2 cut(s)	275, 480
BstSLI	GKGCMC	1 cut(s)	783
BstV2I	GAAGAC	1 cut(s)	846
BstXI	CCANNNNNNTGG	1 cut(s)	599
BsuRI	GGCC	6 cut(s)	240, 469, 499, 603, 717, 768
BtsCI	GGATG	2 cut(s)	195, 868
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	4 cut(s)	195, 282, 388, 846
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	2 cut(s)	127, 206
Cfr10I	RCCGGY	3 cut(s)	61, 193, 308
Cfr13I	GGNCC	8 cut(s)	238, 417, 432, 468, 498, 542, 638, 766
CseI	GACGC	1 cut(s)	318
CviAII	CATG	3 cut(s)	473, 634, 770
DdeI	CTNAG	5 cut(s)	285, 570, 738, 858, 877
DinI	GGCGCC	1 cut(s)	126
DpnI	GATC	2 cut(s)	71, 323
DpnII	GATC	2 cut(s)	69, 321
DrdI	GACNNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	715
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	4 cut(s)	417, 432, 542, 638
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	2 cut(s)	468, 638
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	607, 685
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
FaeI	CATG	3 cut(s)	476, 637, 773
FaiI	YATR	7 cut(s)	296, 446, 474, 496, 635, 644, 771
FaqI	GGGAC	3 cut(s)	331, 580, 651
FatI	CATG	3 cut(s)	472, 633, 769
FokI	GGATG	2 cut(s)	202, 875
FspBI	CTAG	2 cut(s)	338, 774
GlaI	GCGC	2 cut(s)	126, 205
GsaI	CCCAGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	6 cut(s)	240, 469, 499, 603, 717, 768
HapII	CCGG	5 cut(s)	62, 194, 309, 315, 326
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	2 cut(s)	127, 206
Hin1I	GRCGYC	2 cut(s)	125, 329
Hin1II	CATG	3 cut(s)	476, 637, 773
Hin6I	GCGC	2 cut(s)	125, 204
HinP1I	GCGC	2 cut(s)	125, 204
HincII	GTYRAC	1 cut(s)	677
HindII	GTYRAC	1 cut(s)	677
HinfI	GANTC	3 cut(s)	213, 226, 866
HpaII	CCGG	5 cut(s)	62, 194, 309, 315, 326
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	2 cut(s)	677, 781
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	4 cut(s)	82, 230, 710, 879
Hpy8I	GTNNAC	2 cut(s)	677, 781
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	3 cut(s)	161, 174, 614
HpyCH4III	ACNGT	2 cut(s)	528, 885
HpyCH4IV	ACGT	2 cut(s)	51, 133
HpyCH4V	TGCA	4 cut(s)	277, 302, 482, 781
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 203, 277, 286, 341, 802, 841
HpyF3I	CTNAG	5 cut(s)	285, 570, 738, 858, 877
HpySE526I	ACGT	2 cut(s)	51, 133
Hsp92I	GRCGYC	2 cut(s)	125, 329
Hsp92II	CATG	3 cut(s)	476, 637, 773
HspAI	GCGC	2 cut(s)	125, 204
KasI	GGCGCC	1 cut(s)	124
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	69, 321
LmnI	GCTCC	2 cut(s)	584, 853
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	338, 774
MaeII	ACGT	2 cut(s)	51, 133
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	2 cut(s)	71, 323
MboI	GATC	2 cut(s)	69, 321
MboII	GAAGA	5 cut(s)	189, 208, 513, 525, 846
MfeI	CAATTG	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	783
MlsI	TGGCCA	1 cut(s)	717
MluCI	AATT	7 cut(s)	221, 233, 297, 457, 583, 657, 733
MluNI	TGGCCA	1 cut(s)	717
Mly113I	GGCGCC	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	167, 344, 419, 446, 459, 557, 599
Mox20I	TGGCCA	1 cut(s)	717
MroNI	GCCGGC	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	717
MslI	CAYNNNNRTG	2 cut(s)	161, 632
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	2 cut(s)	386, 682
MspI	CCGG	5 cut(s)	62, 194, 309, 315, 326
MspR9I	CCNGG	4 cut(s)	316, 326, 609, 687
MunI	CAATTG	1 cut(s)	221
MvaI	CCWGG	2 cut(s)	609, 687
MwoI	GCNNNNNNNGC	7 cut(s)	124, 203, 277, 286, 341, 802, 841
NaeI	GCCGGC	1 cut(s)	195
NarI	GGCGCC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	316, 326
NdeII	GATC	2 cut(s)	69, 321
NgoMIV	GCCGGC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	476, 637, 773
NlaIV	GGNNCC	6 cut(s)	126, 313, 418, 470, 500, 639
NmuCI	GTSAC	1 cut(s)	625
OliI	CACNNNNGTG	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	213, 866
PflMI	CCANNNNNTGG	2 cut(s)	88, 763
PleI	GAGTC	1 cut(s)	220
PluTI	GGCGCC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	638
Psp1406I	AACGTT	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	607, 685
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	607, 685
PspN4I	GGNNCC	6 cut(s)	126, 313, 418, 470, 500, 639
PspPI	GGNCC	8 cut(s)	238, 417, 432, 468, 498, 542, 638, 766
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	2 cut(s)	279, 484
PstNI	CAGNNNCTG	1 cut(s)	488
PvuII	CAGCTG	2 cut(s)	386, 682
RseI	CAYNNNNRTG	2 cut(s)	161, 632
Sau3AI	GATC	2 cut(s)	69, 321
Sau96I	GGNCC	8 cut(s)	238, 417, 432, 468, 498, 542, 638, 766
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	4 cut(s)	316, 326, 609, 687
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	2 cut(s)	275, 480
SfoI	GGCGCC	1 cut(s)	126
SinI	GGWCC	4 cut(s)	417, 432, 542, 638
SmiMI	CAYNNNNRTG	2 cut(s)	161, 632
SmlI	CTYRAG	2 cut(s)	708, 870
SmoI	CTYRAG	2 cut(s)	708, 870
Sse9I	AATT	7 cut(s)	221, 233, 297, 457, 583, 657, 733
SsiI	CCGC	5 cut(s)	65, 95, 207, 341, 344
SspDI	GGCGCC	1 cut(s)	124
SspMI	CTAG	2 cut(s)	338, 774
StyD4I	CCNGG	4 cut(s)	314, 324, 607, 685
TaaI	ACNGT	2 cut(s)	528, 885
TaiI	ACGT	2 cut(s)	54, 136
TasI	AATT	7 cut(s)	221, 233, 297, 457, 583, 657, 733
TauI	GCSGC	3 cut(s)	209, 344, 347
TfiI	GAWTC	2 cut(s)	213, 866
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	625
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	2 cut(s)	267, 840
TspRI	CASTG	1 cut(s)	427
Van91I	CCANNNNNTGG	2 cut(s)	88, 763
VneI	GTGCAC	1 cut(s)	779
VpaK11BI	GGWCC	4 cut(s)	417, 432, 542, 638
XapI	RAATTY	2 cut(s)	457, 733
XcmI	CCANNNNNNNNNTGG	2 cut(s)	118, 442
XspI	CTAG	2 cut(s)	338, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.