AT3G47650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003565
Physical Location & Seq
Forward (+)
17569424 .. 17570607
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47650.1

Sequence Viewer

Length: 411 bp
ATGGCGAATTCACTATGCTTCTTCTCTTCTCCTCCTACCTTTTGCTTCCAATCTCCAAGCAAAAACCCTAAACCTTCTCACTTCTTCTCAACTAATGATAACACCTCTTCCTTGGTACAGAAGAGAGAACTGCTTCAGACTTCAAGATCCCAAAGTTTTGAAGTTAAGGCCGCAAACAATAATCCTCAGGGCACTAAACCAAACAGTTTAGTTTGTGCAAATTGTGAAGGGGAAGGTTGTGTGGCATGTTCTCAATGCAAAGGAGGTGGTGTGAATTTGATTGATCATTTCAATGGTCAGTTTAAAGCTGGTGCACTCTGTTGGCTTTGCAGAGGTAAAAAGGAGGTGTTGTGTGGGGACTGCAATGGAGCTGGTTTCATTGGTGGGTTCTTGAGCACCTTCGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.55

Weight (kDa)

8.01

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD2_CRD PF25436 68 - 136 1e-37 BSD2 cysteine rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 2 cut(s) 7, 274
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 3 cut(s) 144, 161, 292
AluBI AGCT 2 cut(s) 308, 371
AluI AGCT 2 cut(s) 308, 371
Alw21I GWGCWC 2 cut(s) 316, 398
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 1 cut(s) 141
AoxI GGCC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 312
ApoI RAATTY 2 cut(s) 7, 274
Asp700I GAANNNNTTC 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 186
BaeGI GKGCMC 2 cut(s) 194, 316
Bbv12I GWGCWC 2 cut(s) 316, 398
BclI TGATCA 1 cut(s) 283
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 111
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 335, 365
Bse21I CCTNAGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 2 cut(s) 194, 316
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 316, 398
BslFI GGGAC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 194, 316, 398
Bsp143I GATC 2 cut(s) 146, 283
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 146, 283
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 3 cut(s) 31, 112, 116
BstDEI CTNAG 1 cut(s) 186
BstKTI GATC 2 cut(s) 149, 286
BstMBI GATC 2 cut(s) 146, 283
BstNSI RCATGY 1 cut(s) 249
BstSLI GKGCMC 2 cut(s) 194, 316
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 116
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 1 cut(s) 246
CviJI RGCY 4 cut(s) 170, 308, 325, 371
CviKI_1 RGCY 4 cut(s) 170, 308, 325, 371
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 148, 285
DpnII GATC 2 cut(s) 146, 283
DraI TTTAAA 1 cut(s) 304
Eam1104I CTCTTC 3 cut(s) 31, 112, 116
EarI CTCTTC 3 cut(s) 31, 112, 116
Eco130I CCWWGG 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 249
FaiI YATR 2 cut(s) 16, 247
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 245
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 144, 391
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 84, 221, 227, 409
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 5 cut(s) 218, 258, 314, 330, 363
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 2 cut(s) 146, 283
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 3 cut(s) 173, 294, 357
MalI GATC 2 cut(s) 148, 285
MboI GATC 2 cut(s) 146, 283
MboII GAAGA 5 cut(s) 13, 18, 76, 99, 133
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 3 cut(s) 194, 316, 398
MluCI AATT 3 cut(s) 7, 220, 274
MnlI CCTC 6 cut(s) 42, 115, 195, 257, 326, 337
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 165, 303
MslI CAYNNNNRTG 1 cut(s) 291
NdeII GATC 2 cut(s) 146, 283
NlaIII CATG 1 cut(s) 249
NspI RCATGY 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 2 cut(s) 165, 303
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 2 cut(s) 146, 283
SduI GDGCHC 3 cut(s) 194, 316, 398
SgeI CNNG 8 cut(s) 69, 124, 156, 200, 258, 321, 384, 403
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
Sse9I AATT 3 cut(s) 7, 220, 274
SsiI CCGC 1 cut(s) 171
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 402
TasI AATT 3 cut(s) 7, 220, 274
TauI GCSGC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 165, 303
Tru9I TTAA 2 cut(s) 165, 303
TspDTI ATGAA 1 cut(s) 367
VneI GTGCAC 1 cut(s) 312
XapI RAATTY 2 cut(s) 7, 274
XceI RCATGY 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.