RLG00000015950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003565
Physical Location & Seq
Reverse (-)
2725491 .. 2726797
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015950

Sequence Viewer

Length: 399 bp
ATGGCAACTTCTTCTCTTTGTTTAACAGCAGTTTGTTCATTCAAGTCCTCAAACAAACCAGGAGTGTTGATTGGAAATTTGGGTGGTGGTAAGGTTCTTCGGGTGGATGAAGCATTTCAGAACTCAAAAGCTGCAAAGACTCAATCTTGGGAGATCAAGGCAACAGATGGTAATCAAACCACCAAAAGAAATAGCATAGTCTGTGGTGGTTGTGAAGGAAATGGTGCTATAGCGTGTTCTCAGTGCAAAGGTACTGGAGTTAATTCTGTAGACCACTTCAACGGACAGTTCAAAGCCGGTGGGCTATGTTGGCTTTGCAGGGGTAAAAGGGAGATTCTGTGTGGAGATTGCAATGGTGCTGGGTTTACTGGAGGATTCATGAGCACACAGGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

13.62

Weight (kDa)

8.73

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD2_CRD PF25436 64 - 131 2.2e-38 BSD2 cysteine rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 3 cut(s) 43, 280, 292
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 114
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 397
BfmI CTRYAG 2 cut(s) 228, 267
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 276, 390
BsaBI GATNNNNATC 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 259, 373
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 171
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 259, 373
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 259, 373
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 228, 267
BstV1I GCAGC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 248
CciI TCATGA 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 1 cut(s) 252
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 1 cut(s) 379
CviJI RGCY 4 cut(s) 131, 296, 304, 313
CviKI_1 RGCY 4 cut(s) 131, 296, 304, 313
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 382
FaiI YATR 4 cut(s) 197, 230, 307, 380
FatI CATG 1 cut(s) 378
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 397
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 2 cut(s) 276, 390
HapII CCGG 1 cut(s) 297
Hin1II CATG 1 cut(s) 382
HinfI GANTC 4 cut(s) 139, 334, 375, 392
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 2 cut(s) 271, 366
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 2 cut(s) 271, 366
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 134, 246, 318, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 8 cut(s) 45, 72, 240, 304, 310, 345, 354, 374
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 397
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 2 cut(s) 3, 89
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 2 cut(s) 76, 262
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 58, 365
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 23, 261
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 1 cut(s) 153
NlaIII CATG 1 cut(s) 382
PagI TCATGA 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 334, 375, 392
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 1 cut(s) 58
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 23, 261
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 386
SetI ASST 3 cut(s) 96, 133, 253
SfcI CTRYAG 2 cut(s) 228, 267
Sse9I AATT 2 cut(s) 76, 262
SspMI CTAG 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 288
TasI AATT 2 cut(s) 76, 262
TfiI GAWTC 3 cut(s) 334, 375, 392
Tru1I TTAA 2 cut(s) 23, 261
Tru9I TTAA 2 cut(s) 23, 261
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 27, 123, 367
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 248
XapI RAATTY 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.