FvH4_1g03260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003565
Physical Location & Seq
Reverse (-)
1809051 .. 1810646
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03260.t1

Sequence Viewer

Length: 402 bp
ATGGCAACTTGTTCTTCTCTTTGCTTAACACCAGTTCGTGCATTCAAGTCCTCAAACAAACCAGGAGTTTTGATTGGGAATTCGGGAGGTGGTAAAGTTCTTCGAGTCAATGAAGCGTTTCAGAACTCAAAAGCTGCAAAGACTCAATCTTGGGAGATCAAGGCAACAGATGGTAAACAAACCACCAAGGTCAATAGCATAGTCTGTAGTGATTGTCAAGGAAATGGTGCTATAGCTTGTTCTCAATGCAAAGGTACTGGAGTTAATTCTGTAGACCACTTCAACGGACAGTTCAAAGCCGGTGGGCTATGTTGGCTTTGCAGGGGTAAAAGGGATATTCTGTGTGGAGAATGCAACGGTGCTGGGTTCCTTGGAGGATTCATGAGCACACACGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

13.86

Weight (kDa)

8.87

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD2_CRD PF25436 65 - 133 4.3e-40 BSD2 cysteine rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 3 cut(s) 46, 283, 295
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 2 cut(s) 134, 236
AluI AGCT 2 cut(s) 134, 236
Alw21I GWGCWC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 63
BfaI CTAG 1 cut(s) 400
BfmI CTRYAG 3 cut(s) 205, 231, 270
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 186, 370
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 32, 262
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 186, 370
BseNI ACTGG 2 cut(s) 32, 262
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 300
BsmI GAATGC 2 cut(s) 41, 356
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 156
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 2 cut(s) 32, 262
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 186, 370
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 186, 370
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 291, 359
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 3 cut(s) 205, 231, 270
BstV1I GCAGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 299
Csp6I GTAC 1 cut(s) 255
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 1 cut(s) 382
CviJI RGCY 5 cut(s) 134, 236, 299, 307, 316
CviKI_1 RGCY 5 cut(s) 134, 236, 299, 307, 316
CviQI GTAC 1 cut(s) 255
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 186, 370
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 186, 370
ErhI CCWWGG 2 cut(s) 186, 370
FaeI CATG 1 cut(s) 385
FaiI YATR 4 cut(s) 200, 233, 310, 383
FatI CATG 1 cut(s) 381
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 400
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 279
HapII CCGG 1 cut(s) 300
Hin1II CATG 1 cut(s) 385
HinfI GANTC 3 cut(s) 105, 142, 378
HpaII CCGG 1 cut(s) 300
Hpy166II GTNNAC 2 cut(s) 176, 274
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 84, 382
Hpy8I GTNNAC 2 cut(s) 176, 274
Hpy99I CGWCG 1 cut(s) 398
HpyCH4III ACNGT 2 cut(s) 291, 359
HpyCH4V TGCA 5 cut(s) 41, 137, 249, 321, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
Hsp92II CATG 1 cut(s) 385
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 7 cut(s) 45, 48, 75, 243, 307, 313, 348
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 400
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 6, 92
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 2 cut(s) 79, 265
MlyI GAGTC 2 cut(s) 114, 136
MnlI CCTC 3 cut(s) 61, 80, 368
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 2 cut(s) 26, 264
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 2 cut(s) 41, 356
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeII GATC 1 cut(s) 156
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 1 cut(s) 368
PagI TCATGA 1 cut(s) 381
PctI GAATGC 2 cut(s) 41, 356
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 2 cut(s) 113, 136
PpsI GAGTC 2 cut(s) 113, 136
Psp6I CCWGG 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 368
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 26, 264
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 156
SchI GAGTC 2 cut(s) 114, 136
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 389
SetI ASST 5 cut(s) 91, 136, 192, 238, 256
SfcI CTRYAG 3 cut(s) 205, 231, 270
Sse9I AATT 2 cut(s) 79, 265
SspMI CTAG 1 cut(s) 400
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 2 cut(s) 186, 370
TaaI ACNGT 2 cut(s) 291, 359
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 79, 265
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 2 cut(s) 26, 264
Tru9I TTAA 2 cut(s) 26, 264
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 126, 370
TspGWI ACGGA 1 cut(s) 300
XapI RAATTY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.