Rroxscaffold_7G00178810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003565
Physical Location & Seq
Forward (+)
18468655 .. 18470291
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178810.1

Sequence Viewer

Length: 390 bp
ATGGCCTATGCTCTCTACTCAGCTCCTTCAAGTTCCTTCAAGGCCACACCAGCACCAGGTATTCATAGCAGTAACCAGAAGCTCAGTCATATTAACTACTTCGTAAATAGTTCTCCAGCTGCTAAAGTCTTCCATGTGAAGGCTAAGGCTGCCAAAAGTGATGAAAGCACAAAGCGAAACAGCATGGTTTGTTCTGATTGTGAGGGAAATGGTGCAGTTCTCTGCTCTCAATGCAAAGGCAGTGGAGTAAACTCCGAGGATCTGTTTAGTGGACTGTTTAAAGCTGGGGATTCATGCTGGCTTTGCGGATTTACAGTCGGACAACAAGTGGCAGAAAGGAGATGTTGTGCGGAAATTGCAATGGAGCCGGCTTTCTTGGAGGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.66

Weight (kDa)

7.54

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD2_CRD PF25436 60 - 103 1.4e-20 BSD2 cysteine rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 306, 350
AclWI GGATC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 56, 139
AgsI TTSAA 2 cut(s) 30, 40
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 4 cut(s) 23, 82, 119, 284
AluI AGCT 4 cut(s) 23, 82, 119, 284
AlwI GGATC 1 cut(s) 267
AoxI GGCC 2 cut(s) 3, 42
ApeKI GCWGC 2 cut(s) 119, 149
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 106, 136
BciT130I CCWGG 1 cut(s) 57
BisI GCNGC 2 cut(s) 120, 150
BlsI GCNGC 2 cut(s) 121, 151
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 139
Bse118I RCCGGY 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 56, 139
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 33, 97
BseXI GCAGC 2 cut(s) 106, 136
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 2 cut(s) 5, 44
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 56, 139
BsnI GGCC 2 cut(s) 5, 44
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 2 cut(s) 306, 350
BspANI GGCC 2 cut(s) 5, 44
BspCNI CTCAG 2 cut(s) 32, 96
BspHI TCATGA 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 276, 316
BstC8I GCNNGC 2 cut(s) 299, 369
BstDEI CTNAG 3 cut(s) 19, 83, 144
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 5 cut(s) 50, 149, 231, 303, 356
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 106, 136
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 2 cut(s) 5, 44
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 299, 369
CciI TCATGA 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 367
CsiI ACCWGGT 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 4 cut(s) 134, 184, 294, 387
DdeI CTNAG 3 cut(s) 19, 83, 144
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
DraI TTTAAA 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 4 cut(s) 137, 187, 297, 390
FaiI YATR 7 cut(s) 9, 66, 90, 135, 185, 295, 388
FatI CATG 4 cut(s) 133, 183, 293, 386
Fnu4HI GCNGC 2 cut(s) 120, 150
Fsp4HI GCNGC 2 cut(s) 120, 150
GluI GCNGC 2 cut(s) 120, 150
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 5, 44
HapII CCGG 1 cut(s) 368
Hin1II CATG 4 cut(s) 137, 187, 297, 390
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 250, 272
Hpy188I TCNGA 3 cut(s) 196, 256, 320
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 2 cut(s) 250, 272
HpyAV CCTTC 3 cut(s) 36, 46, 133
HpyCH4III ACNGT 2 cut(s) 276, 316
HpyCH4V TGCA 3 cut(s) 215, 234, 359
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 149, 231, 303, 356
HpyF3I CTNAG 3 cut(s) 19, 83, 144
Hsp92II CATG 4 cut(s) 137, 187, 297, 390
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 28, 364
LpnPI CCDG 8 cut(s) 42, 63, 69, 89, 129, 270, 283, 381
Lsp1109I GCAGC 2 cut(s) 106, 136
MabI ACCWGGT 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 121
MflI RGATCY 1 cut(s) 259
MluCI AATT 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 3 cut(s) 196, 250, 373
MroNI GCCGGC 1 cut(s) 367
MseI TTAA 2 cut(s) 93, 279
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 5 cut(s) 50, 149, 231, 303, 356
NaeI GCCGGC 1 cut(s) 369
NdeII GATC 1 cut(s) 259
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 4 cut(s) 137, 187, 297, 390
NlaIV GGNNCC 1 cut(s) 366
PagI TCATGA 1 cut(s) 386
PdiI GCCGGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 121, 151
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 366
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 119
SaqAI TTAA 2 cut(s) 93, 279
SatI GCNGC 2 cut(s) 120, 150
Sau3AI GATC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 57
SetI ASST 6 cut(s) 25, 61, 84, 121, 286, 384
SexAI ACCWGGT 1 cut(s) 55
Sse9I AATT 1 cut(s) 354
SsiI CCGC 2 cut(s) 306, 350
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 276, 316
TasI AATT 1 cut(s) 354
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 93, 279
Tru9I TTAA 2 cut(s) 93, 279
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 119, 149
TspDTI ATGAA 4 cut(s) 53, 177, 282, 375
TspRI CASTG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.