Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003565

Physical Location & Seq

Genomic Coordinates Forward (+)

57073661 .. 57078017

Gene Structure 4357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0483800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTGGAAGCGGGAATTCTTCAGCCACATACCCAGAAGCCTGTGGATCCAGCCAGTCAATTACCAGGGTTCTGGAGGTCAGTTCATCAAGAAGACAAATTTCTGCGTTGCAAAAAGTCGAATCCTAAAGTGTTGCAATGGGAGCTAGAACAAGATTACGAGTTTAGACAAACTGTCTATACTCTTCCAATGTACATGTTCTGGTTCAGTCACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

8.78

Weight (kDa)

6.82

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47650
fragaria_vesca	FvH4_1g03260 FvH4_2g29200 FvH4_2g29200
malus_domestica	MD02G1031600.v1.1 MD15G1124500.v1.1 MD15G1173100.v1.1
prunus_persica	Prupe.1G480000_v2.0.a1 Prupe.1G480000_v2.0.a1 Prupe.7G243100_v2.0.a1
pyrus_communis	pycom02g02640 pycom15g11210 pycom15g15470
rosa_chinensis	RchiOBHm_Chr2g0088401 RchiOBHm_Chr6g0298061
rosa_laevigata	RLG00000011539 RLG00000015950
rosa_multiflora	Rmu_sc0002800.1_g000015 Rmu_sc0004235.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152700 Rroxscaffold_7G00169980 Rroxscaffold_7G00178810
rosa_rugosa	Rorug01G0483800 Rorug06G0278200 Rorug06G0278200
rosa_samantha	Rh2AG038400 Rh2BG037800 Rh2CG038800 Rh2DG038400 Rh6AG388600 Rh6BG396900 Rh6CG402800 Rh6DG389300
rosa_wichuraiana	Rw2G003040 Rw6G033940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	41, 54
AcsI	RAATTY	2 cut(s)	15, 98
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	195
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	2 cut(s)	41, 54
ApoI	RAATTY	2 cut(s)	15, 98
BamHI	GGATCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	66
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	41, 54
BsrDI	GCAATG	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	189
BstAUI	TGTACA	1 cut(s)	192
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	4 cut(s)	25, 40, 53, 145
CviKI_1	RGCY	4 cut(s)	25, 40, 53, 145
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	189
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	30, 180, 197
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	4
FspBI	CTAG	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	94
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	73, 89
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	111, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	47, 51, 54, 58, 63, 67, 78, 187
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	11, 104, 176
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	3 cut(s)	15, 59, 98
MnlI	CCTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	199
PciI	ACATGT	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	217
Sau3AI	GATC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	2 cut(s)	80, 147
Sse9I	AATT	3 cut(s)	15, 59, 98
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	15, 59, 98
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	217
Tru9I	TTAA	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	74
XapI	RAATTY	2 cut(s)	15, 98
XceI	RCATGY	1 cut(s)	199
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.