FvH4_2g29200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003565
Physical Location & Seq
Reverse (-)
22697232 .. 22698531
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29200.t2

Sequence Viewer

Length: 471 bp
ATGTTTCGAGTCAGACTGGTGGTGCAAGGTTGCCAGCTAGCTCCTCCCTCATTCTTCACTCTTCAGTCTTCAATAATGGCATATGCTCTCTACTCAGCTCCTTCAAGTTCCTTCAAGGCCACCCCAGAACCAGGCAAGCATATCAGTAATCAGAAGCTCATTACAATAAACTACTTCGTCCAAAATTGCCCTGCTGCTAAAGGCTTCAATGTTAAAGCTAAGGCTGCAAAAAGTGATGAAAGCACAAAGCGAAACAGCATGGTTTGTTCTGATTGTGAGGGAAATGGTGCAGTTCTCTGCTCTCAATGCAAAGGGAGTGGGATAAACTCCGATGACCTGTTTGGTGGACGGTTCAAAGCTGGGGATTCATGTTGGCTTTGCGGTGGCAGAAAGGAAATGTTGTGTGGAAATTGCAACGGAGCCGGCTTTCTTGGAGGTTTCATGAGCACTTCTGATACCACAGCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.53

Weight (kDa)

8.7

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD2_CRD PF25436 62 - 129 4.1e-37 BSD2 cysteine rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 5 cut(s) 72, 105, 115, 208, 355
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 6 cut(s) 37, 41, 98, 157, 218, 359
AluI AGCT 6 cut(s) 37, 41, 98, 157, 218, 359
Alw21I GWGCWC 1 cut(s) 449
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 194, 224
AsuNHI GCTAGC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 2 cut(s) 181, 211
BciT130I CCWGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 38
BisI GCNGC 2 cut(s) 195, 225
BlsI GCNGC 2 cut(s) 196, 226
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 132
BmtI GCTAGC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 181, 211
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 131
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 449
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 4 cut(s) 35, 39, 137, 424
BstDEI CTNAG 2 cut(s) 94, 219
BstMWI GCNNNNNNNGC 2 cut(s) 224, 306
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 181, 211
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 119
Cac8I GCNNGC 4 cut(s) 35, 39, 137, 424
CciI TCATGA 1 cut(s) 441
Cfr10I RCCGGY 1 cut(s) 422
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 3 cut(s) 259, 369, 442
DdeI CTNAG 2 cut(s) 94, 219
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 262, 372, 445
FaiI YATR 6 cut(s) 82, 84, 141, 260, 370, 443
FatI CATG 3 cut(s) 258, 368, 441
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 195, 225
Fsp4HI GCNGC 2 cut(s) 195, 225
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 195, 225
GsaI CCCAGC 1 cut(s) 363
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 423
Hin1II CATG 3 cut(s) 262, 372, 445
HinfI GANTC 2 cut(s) 9, 365
HpaII CCGG 1 cut(s) 423
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 5 cut(s) 14, 153, 271, 331, 454
Hpy188III TCNNGA 1 cut(s) 442
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 111, 121
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 5 cut(s) 25, 227, 290, 309, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 306
HpyF3I CTNAG 2 cut(s) 94, 219
Hsp92II CATG 3 cut(s) 262, 372, 445
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
LmnI GCTCC 3 cut(s) 46, 103, 419
LpnPI CCDG 9 cut(s) 2, 47, 117, 138, 144, 204, 345, 350, 436
Lsp1109I GCAGC 2 cut(s) 181, 211
MaeI CTAG 1 cut(s) 38
MboII GAAGA 3 cut(s) 46, 53, 60
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 2 cut(s) 184, 409
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 4 cut(s) 54, 58, 271, 428
MroNI GCCGGC 1 cut(s) 422
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 224, 306
NaeI GCCGGC 1 cut(s) 424
NdeI CATATG 1 cut(s) 82
NgoMIV GCCGGC 1 cut(s) 422
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 262, 372, 445
NlaIV GGNNCC 1 cut(s) 421
PagI TCATGA 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 424
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 2 cut(s) 196, 226
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 421
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 195, 225
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 449
SetI ASST 9 cut(s) 31, 39, 43, 100, 159, 220, 339, 361, 439
Sse9I AATT 2 cut(s) 184, 409
SsiI CCGC 1 cut(s) 381
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 184, 409
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 2 cut(s) 194, 224
TspDTI ATGAA 3 cut(s) 252, 357, 430
TspGWI ACGGA 1 cut(s) 432
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.