Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003565

Physical Location & Seq

Genomic Coordinates Forward (+)

7574988 .. 7576181

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTTATGCTTTGTACTTGGCACCTTCAAATTCCTCGAAAATCACCCCACGACCAGGCAACCATAACACTGCTCAAAAGCTGGTTCGAATAGATAAGCTGCTCCAAAATTCTCCTGCCGCTAGATTTACCAATCTCAAAGCTAAGGCTGAGAAAAGCAATGAAAGCGTAAAACCGAACAGCATGATTTGCCCTGATTGCGATGCAAATGGTGCAGTTCTGTGCTCGCAATGCAAAGGTAGTGGAGTGAACTCTGTTGATCTCTTCGGTGGACGGTTTAAAGCCGGTGACTCGTGCTGGCTCTGCGGTGGTAGAAAGGAGATGTTGTGCGGAAATTGCAACGGAGCTGGGTTTCTCGGAGGTTTCATGAGCACTTGCGATAGTACGCCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

13.81

Weight (kDa)

8.77

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47650
fragaria_vesca	FvH4_1g03260 FvH4_2g29200 FvH4_2g29200
malus_domestica	MD02G1031600.v1.1 MD15G1124500.v1.1 MD15G1173100.v1.1
prunus_persica	Prupe.1G480000_v2.0.a1 Prupe.1G480000_v2.0.a1 Prupe.7G243100_v2.0.a1
pyrus_communis	pycom02g02640 pycom15g11210 pycom15g15470
rosa_chinensis	RchiOBHm_Chr2g0088401 RchiOBHm_Chr6g0298061
rosa_laevigata	RLG00000011539 RLG00000015950
rosa_multiflora	Rmu_sc0002800.1_g000015 Rmu_sc0004235.1_g000003
rosa_roxburghii	Rroxscaffold_2G00152700 Rroxscaffold_7G00169980 Rroxscaffold_7G00178810
rosa_rugosa	Rorug01G0483800 Rorug06G0278200 Rorug06G0278200
rosa_samantha	Rh2AG038400 Rh2BG037800 Rh2CG038800 Rh2DG038400 Rh6AG388600 Rh6BG396900 Rh6CG402800 Rh6DG389300
rosa_wichuraiana	Rw2G003040 Rw6G033940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	3 cut(s)	120, 306, 330
AcsI	RAATTY	2 cut(s)	31, 109
AfaI	GTAC	2 cut(s)	17, 385
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	82, 100, 143, 347
AluI	AGCT	4 cut(s)	82, 100, 143, 347
Alw21I	GWGCWC	2 cut(s)	227, 374
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	31, 109
AsuHPI	GGTGA	2 cut(s)	37, 299
AsuII	TTCGAA	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	227, 374
BbvI	GCAGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	101, 120
BlsI	GCNGC	2 cut(s)	102, 121
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	166, 236
BseBI	CCWGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	2 cut(s)	166, 236
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	227, 374
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	227, 374
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	3 cut(s)	120, 306, 330
BspCNI	CTCAG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	166, 236
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssMI	GATC	1 cut(s)	259
BssSI	CACGAG	1 cut(s)	292
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	269
BstAPI	GCANNNNNTGC	2 cut(s)	189, 212
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	227, 299
BstDEI	CTNAG	2 cut(s)	144, 150
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	7 cut(s)	165, 189, 198, 212, 231, 303, 336
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	227, 299
CciI	TCATGA	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	16, 384
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	2 cut(s)	184, 367
CviJI	RGCY	8 cut(s)	5, 82, 100, 143, 149, 284, 301, 347
CviKI_1	RGCY	8 cut(s)	5, 82, 100, 143, 149, 284, 301, 347
CviQI	GTAC	2 cut(s)	16, 384
DdeI	CTNAG	2 cut(s)	144, 150
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DraI	TTTAAA	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	187, 370
FaiI	YATR	4 cut(s)	9, 66, 185, 368
FatI	CATG	2 cut(s)	183, 366
Fnu4HI	GCNGC	2 cut(s)	101, 120
Fsp4HI	GCNGC	2 cut(s)	101, 120
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	101, 120
GsaI	CCCAGC	1 cut(s)	351
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	2 cut(s)	187, 370
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	37, 299
Hpy166II	GTNNAC	2 cut(s)	250, 272
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	2 cut(s)	250, 272
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	206, 215, 234, 339
HpyF10VI	GCNNNNNNNGC	7 cut(s)	165, 189, 198, 212, 231, 303, 336
HpyF3I	CTNAG	2 cut(s)	144, 150
Hsp92II	CATG	2 cut(s)	187, 370
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	108, 344
LpnPI	CCDG	8 cut(s)	42, 68, 69, 129, 207, 283, 298, 333
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	227, 374
MluCI	AATT	3 cut(s)	31, 109, 334
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	2 cut(s)	46, 353
MseI	TTAA	1 cut(s)	279
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	7 cut(s)	165, 189, 198, 212, 231, 303, 336
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	187, 370
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	88
PagI	TCATGA	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	102, 121
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	17, 385
RsaNI	GTAC	2 cut(s)	16, 384
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	101, 120
Sau3AI	GATC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	227, 374
SetI	ASST	7 cut(s)	28, 84, 102, 145, 241, 349, 364
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	88
Sse9I	AATT	3 cut(s)	31, 109, 334
SsiI	CCGC	3 cut(s)	120, 306, 330
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	38, 88
TasI	AATT	3 cut(s)	31, 109, 334
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	177, 355
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	2 cut(s)	31, 109
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.