pycom02g02640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0003565
Physical Location & Seq
Reverse (-)
1652410 .. 1654384
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02640.4

Sequence Viewer

Length: 396 bp
ATGGCGAGCTCTCTTTCTTTCATGCCTGTTTGTTCCTTCGATTCCACAAACAAACCAAGGGTTTTCATCGAAAAATCGGTTGGCGGGAAGGTTGTTCGGGTGAATCAAGTGTTTCGGAGCTCTAAAGCTGCAAACTTTCAGTCATGGGAGGTCAAGGCTACAGACGGTACTCCAACAGCCAAAGTAAATAGCCTAGTCTGTTCAGCATGTGAGGGAAACGGTGCAAAAGTGTGTAATCAATGCGAAGGTACTGGAGTTAATTCTGTAGACCACTTCAACGGACAGTTTAAAGCTGGTGGACTATGTTGGCTTTGCAGGGGGAAGAGGGAGATTTTGTGTGGAGAATGCAATGGTGCAGGGTTTTTGGGTGGCTTCATGAGCACACATGACGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.87

Weight (kDa)

8.62

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 2 cut(s) 169, 250
AgsI TTSAA 1 cut(s) 277
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 4 cut(s) 9, 120, 128, 293
AluI AGCT 4 cut(s) 9, 120, 128, 293
Alw21I GWGCWC 3 cut(s) 11, 122, 383
ApeKI GCWGC 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsuHPI GGTGA 1 cut(s) 112
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BanII GRGCYC 2 cut(s) 11, 122
Bbv12I GWGCWC 3 cut(s) 11, 122, 383
BbvI GCAGC 1 cut(s) 115
BfaI CTAG 2 cut(s) 194, 394
BfmI CTRYAG 2 cut(s) 159, 264
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 56
BseMI GCAATG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 375
BsiHKAI GWGCWC 3 cut(s) 11, 122, 383
BsmI GAATGC 1 cut(s) 350
Bsp1286I GDGCHC 3 cut(s) 11, 122, 383
BspACI CCGC 1 cut(s) 84
BspHI TCATGA 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 56
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 3 cut(s) 167, 221, 285
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 159, 264
BstV1I GCAGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 375
Csp6I GTAC 2 cut(s) 168, 249
CviAII CATG 5 cut(s) 22, 144, 207, 376, 386
CviJI RGCY 9 cut(s) 9, 120, 128, 158, 179, 192, 293, 310, 372
CviKI_1 RGCY 9 cut(s) 9, 120, 128, 158, 179, 192, 293, 310, 372
CviQI GTAC 2 cut(s) 168, 249
DraI TTTAAA 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Ecl136II GAGCTC 2 cut(s) 9, 120
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 11, 122
Eco53kI GAGCTC 2 cut(s) 9, 120
EcoICRI GAGCTC 2 cut(s) 9, 120
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 2 cut(s) 11, 122
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 5 cut(s) 25, 147, 210, 379, 389
FaiI YATR 6 cut(s) 23, 145, 208, 304, 377, 387
FatI CATG 5 cut(s) 21, 143, 206, 375, 385
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 129
FriOI GRGCYC 2 cut(s) 11, 122
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 194, 394
GluI GCNGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 5 cut(s) 25, 147, 210, 379, 389
HinfI GANTC 2 cut(s) 41, 103
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 268, 299
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 2 cut(s) 268, 299
HpyAV CCTTC 3 cut(s) 46, 82, 239
HpyCH4III ACNGT 3 cut(s) 167, 221, 285
HpyCH4V TGCA 5 cut(s) 131, 224, 315, 348, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 5 cut(s) 25, 147, 210, 379, 389
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 39, 237, 279, 301, 342
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 2 cut(s) 194, 394
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 3 cut(s) 11, 122, 383
MluCI AATT 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 3 cut(s) 142, 205, 318
MseI TTAA 2 cut(s) 258, 288
Mva1269I GAATGC 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 378
NlaIII CATG 5 cut(s) 25, 147, 210, 379, 389
NspI RCATGY 1 cut(s) 210
PagI TCATGA 1 cut(s) 375
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 41, 103
PkrI GCNGC 1 cut(s) 130
Psp124BI GAGCTC 2 cut(s) 11, 122
RsaI GTAC 2 cut(s) 169, 250
RsaNI GTAC 2 cut(s) 168, 249
SacI GAGCTC 2 cut(s) 11, 122
SaqAI TTAA 2 cut(s) 258, 288
SatI GCNGC 1 cut(s) 129
SduI GDGCHC 3 cut(s) 11, 122, 383
SetI ASST 7 cut(s) 11, 93, 122, 130, 153, 250, 295
SfcI CTRYAG 2 cut(s) 159, 264
Sse9I AATT 1 cut(s) 259
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 194, 394
SstI GAGCTC 2 cut(s) 11, 122
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 3 cut(s) 167, 221, 285
TaqI TCGA 2 cut(s) 39, 69
TasI AATT 1 cut(s) 259
TfiI GAWTC 2 cut(s) 41, 103
Tru1I TTAA 2 cut(s) 258, 288
Tru9I TTAA 2 cut(s) 258, 288
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 10, 55, 364
TspGWI ACGGA 1 cut(s) 294
XceI RCATGY 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 194, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.