MD15G1124500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003565
Physical Location & Seq
Forward (+)
9043800 .. 9045009
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1124500.v1.1.491

Sequence Viewer

Length: 312 bp
ATGGCTTATGCTTTGTACTTGGCACCTTCAAGTTCCTTGAAAATCACCCCAGAACCAGGCAACCATAGCGCTACTCAAAAGCTGGTTCGAATGGATAAGCTGCTGCAAATTTCTCCTGCCGCTAGATTTAACCAGCTCAAAGCTAAGGCTGAGAAAAGCAATGAAAGCGTAAAACCTAACAGCATGATTTGCCCTGATTGTGATGCAAATGGTGCAGTTCTGTGCTCACAGTGCAAAGGTAGTGGAGTGAACTCTGTTGATCTCTTCGGTGGACGGTTTAAAGCCGGTGACTCGTGCTGGCTCTGCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.94

Weight (kDa)

8.81

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD2_CRD PF25436 60 - 103 4.4e-20 BSD2 cysteine rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 2 cut(s) 120, 306
AcsI RAATTY 1 cut(s) 108
AfaI GTAC 1 cut(s) 17
AfeI AGCGCT 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 30, 40
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 4 cut(s) 82, 100, 136, 143
AluI AGCT 4 cut(s) 82, 100, 136, 143
Alw21I GWGCWC 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 100, 103
ApoI RAATTY 1 cut(s) 108
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 37, 299
AsuII TTCGAA 1 cut(s) 88
BanI GGYRCC 1 cut(s) 22
BauI CACGAG 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 87, 90
BciT130I CCWGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 3 cut(s) 101, 104, 120
BlsI GCNGC 3 cut(s) 102, 105, 121
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 87, 90
BsgI GTGCAG 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 2 cut(s) 120, 306
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssMI GATC 1 cut(s) 259
BssSI CACGAG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 231, 276
Bst6I CTCTTC 1 cut(s) 269
BstAPI GCANNNNNTGC 2 cut(s) 189, 212
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 144, 150
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 6 cut(s) 66, 165, 189, 212, 231, 303
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 87, 90
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 284
Csp6I GTAC 1 cut(s) 16
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 1 cut(s) 184
CviJI RGCY 8 cut(s) 5, 82, 100, 136, 143, 149, 284, 301
CviKI_1 RGCY 8 cut(s) 5, 82, 100, 136, 143, 149, 284, 301
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 144, 150
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
DraI TTTAAA 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco47III AGCGCT 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 9, 66, 185
FatI CATG 1 cut(s) 183
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 101, 104, 120
Fsp4HI GCNGC 3 cut(s) 101, 104, 120
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 101, 104, 120
HaeII RGCGCY 1 cut(s) 72
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 37, 299
Hpy166II GTNNAC 2 cut(s) 250, 272
Hpy8I GTNNAC 2 cut(s) 250, 272
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 231, 276
HpyCH4V TGCA 4 cut(s) 106, 206, 215, 234
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 165, 189, 212, 231, 303
HpyF3I CTNAG 2 cut(s) 144, 150
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 9 cut(s) 42, 63, 68, 69, 129, 146, 207, 283, 298
Lsp1109I GCAGC 2 cut(s) 87, 90
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 1 cut(s) 108
MlyI GAGTC 1 cut(s) 284
MseI TTAA 2 cut(s) 129, 279
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 6 cut(s) 66, 165, 189, 212, 231, 303
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 287
NspV TTCGAA 1 cut(s) 88
PkrI GCNGC 3 cut(s) 102, 105, 121
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 129, 279
SatI GCNGC 3 cut(s) 101, 104, 120
Sau3AI GATC 1 cut(s) 259
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 227
SetI ASST 7 cut(s) 28, 84, 102, 138, 145, 178, 241
SfaNI GCATC 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 88
Sse9I AATT 1 cut(s) 108
SsiI CCGC 2 cut(s) 120, 306
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 231, 276
TaqI TCGA 1 cut(s) 88
TasI AATT 1 cut(s) 108
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 129, 279
Tru9I TTAA 2 cut(s) 129, 279
TscAI CASTG 1 cut(s) 236
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 100, 103
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 236
XapI RAATTY 1 cut(s) 108
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.