AT3G47850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011101
Physical Location & Seq
Reverse (-)
17654129 .. 17656013
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47850.1

Sequence Viewer

Length: 1059 bp
ATGCAAGTCGAAATCCCATCGCCGTATGATCACGGAAGCAGAAGGCAACGGCGAATTCGACGAACGGAAGAAACCCAAAAGCAGAAGAAGATGGTGGCGATATCTATGTACAGAGGCAACCTTCACAAAGTTCCCGACGTACCTCGCCGGTGGATAATGCCTGACCGTAATCTCTCTTTCAAGGATTTCAAATCTCTTCTTCATCGCCGTAAAAAAGCCCTTTCTCGTCTCCCCCTTAACCCTAATTTGAACCTTAGCGTCAAGACTGAGTTGGTTACTGATCAGGAGAATCCAATTCTTCCATCTGAAGCGAACGGTTCTTCTGGGAAGCAGAAGCTATTTGAGGTAAAGAGAGAGGAGATTTGTGGGAATCGGGTTAAGGGAGATGAGAACAACGACAGAGGTTTTGAAGGAGCTCGATCAGACGGTGGAGATCGTCCCGGGAGAGTGACGGAATCAAAGGAAACCGATAATGTGCCACACAAGTATGCGGCCAAGGAGGAGGAGACGAATGAAGCAGCTGAAAAAGTACCAAGCGAGACAGAGTTAAAACGGAAAGAAGTGGAGGAGAGATTACAAGTTTTGAATGCAAAGAAACACAATCTAGTCCAAGTGCTTAAGCAGATTTTAAATGCTGAGGAAGAATTGAAAAGACGCAGCTACATGCAACAACAAGGAACCACCGTAGCCACTCGTCCTTCTCTTCCACTCCATGTGGATGTCTCGAATGACTCAGGAGGTAATGTTGGTACTCACATGGAAGGCGGGGAAACTGATGATGCAGCGAATCATAATAATGCTCAAACTCGTACTCTGCTTCGACTGTGTGGCGCTTCTTCATCATCTGAATCTCCTCTGAGAAGAGCAGCAGCCTTGTCACAACACAATATGGTTCCACATACTTCTCGATGGAGCCCGCTCGTTGGTCCTTCTCAACCCGGTCCTGCAGTCACTGTTTCTGCGTCTGGAACAAACTACATTGCTTCATCTCCTTCACCAGCGGGTTTTGGTGGCACTTCTGTTTTCAGAGAATCACGGCTTCAGAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

352

Amino Acids

39.22

Weight (kDa)

9.55

Isoelectric Point (pI)

74.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 919
AciI CCGC 4 cut(s) 491, 765, 917, 1001
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 327, 1025
AfaI GTAC 5 cut(s) 110, 141, 531, 751, 811
AfiI CCNNNNNNNGG 1 cut(s) 923
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 6 cut(s) 181, 190, 250, 410, 586, 649
AluBI AGCT 4 cut(s) 337, 416, 521, 660
AluI AGCT 4 cut(s) 337, 416, 521, 660
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 4 cut(s) 233, 500, 533, 727
AlwNI CAGNNNCTG 1 cut(s) 953
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 5 cut(s) 518, 657, 782, 866, 869
ApoI RAATTY 1 cut(s) 54
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 1 cut(s) 833
AspS9I GGNCC 2 cut(s) 926, 941
AsuC2I CCSGG 3 cut(s) 441, 442, 939
AsuHPI GGTGA 1 cut(s) 987
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 2 cut(s) 926, 941
BanII GRGCYC 2 cut(s) 418, 917
Bbv12I GWGCWC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 5 cut(s) 530, 669, 794, 878, 881
BccI CCATC 4 cut(s) 25, 85, 310, 903
BceAI ACGGC 4 cut(s) 7, 65, 192, 1052
BclI TGATCA 2 cut(s) 28, 280
BcnI CCSGG 3 cut(s) 441, 442, 939
BcoDI GTCTC 4 cut(s) 233, 500, 533, 727
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 1 cut(s) 834
BfrI CTTAAG 1 cut(s) 617
BisI GCNGC 6 cut(s) 492, 519, 658, 783, 867, 870
BlsI GCNGC 6 cut(s) 493, 520, 659, 784, 868, 871
Bme1390I CCNGG 3 cut(s) 441, 442, 939
Bme18I GGWCC 2 cut(s) 926, 941
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 926, 941
BmiI GGNNCC 3 cut(s) 679, 894, 914
BmrFI CCNGG 3 cut(s) 441, 442, 939
BmsI GCATC 1 cut(s) 769
Bpu10I CCTNAGC 2 cut(s) 254, 636
BpuMI CCSGG 3 cut(s) 441, 442, 939
BsaJI CCNNGG 3 cut(s) 440, 495, 1049
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 923
Bse118I RCCGGY 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 978
BseDI CCNNGG 3 cut(s) 440, 495, 1049
BseGI GGATG 1 cut(s) 724
BseLI CCNNNNNNNGG 1 cut(s) 923
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 4 cut(s) 258, 627, 747, 848
BseRI GAGGAG 5 cut(s) 371, 515, 518, 581, 843
BseXI GCAGC 5 cut(s) 530, 669, 794, 878, 881
BshFI GGCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 3 cut(s) 148, 441, 939
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 923
BsmAI GTCTC 4 cut(s) 233, 500, 533, 727
BsmBI CGTCTC 2 cut(s) 233, 500
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 1 cut(s) 494
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 418, 917
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 4 cut(s) 28, 280, 419, 433
Bsp19I CCATGG 1 cut(s) 1049
BspACI CCGC 4 cut(s) 491, 765, 917, 1001
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 4 cut(s) 259, 628, 746, 849
BspLI GGNNCC 3 cut(s) 679, 894, 914
BspMAI CTGCAG 1 cut(s) 949
BspQI GCTCTTC 1 cut(s) 856
BspTI CTTAAG 1 cut(s) 617
BsrBI CCGCTC 1 cut(s) 919
BsrDI GCAATG 1 cut(s) 978
BsrFI RCCGGY 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 3 cut(s) 440, 495, 1049
BssMI GATC 4 cut(s) 28, 280, 419, 433
BssT1I CCWWGG 2 cut(s) 495, 1049
Bst4CI ACNGT 6 cut(s) 167, 317, 428, 685, 825, 955
Bst6I CTCTTC 3 cut(s) 201, 708, 856
BstAFI CTTAAG 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 917
BstDEI CTNAG 5 cut(s) 254, 267, 636, 733, 857
BstDSI CCRYGG 1 cut(s) 1049
BstF5I GGATG 1 cut(s) 724
BstH2I RGCGCY 1 cut(s) 834
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 4 cut(s) 31, 283, 422, 436
BstMAI GTCTC 4 cut(s) 233, 500, 533, 727
BstMBI GATC 4 cut(s) 28, 280, 419, 433
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 3 cut(s) 439, 440, 937
BstSFI CTRYAG 1 cut(s) 945
BstV1I GCAGC 5 cut(s) 530, 669, 794, 878, 881
BsuRI GGCC 1 cut(s) 494
BtgI CCRYGG 1 cut(s) 1049
BtgZI GCGATG 2 cut(s) 3, 188
BtsCI GGATG 1 cut(s) 724
BtsIMutI CAGTG 1 cut(s) 951
Cac8I GCNNGC 1 cut(s) 917
CaiI CAGNNNCTG 1 cut(s) 953
CfoI GCGC 1 cut(s) 833
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 926, 941
Cfr9I CCCGGG 1 cut(s) 440
CseI GACGC 3 cut(s) 247, 663, 951
Csp6I GTAC 5 cut(s) 109, 140, 530, 750, 810
CviAII CATG 4 cut(s) 664, 713, 757, 1050
CviQI GTAC 5 cut(s) 109, 140, 530, 750, 810
DdeI CTNAG 5 cut(s) 254, 267, 636, 733, 857
DpnI GATC 4 cut(s) 30, 282, 421, 435
DpnII GATC 4 cut(s) 28, 280, 419, 433
DraI TTTAAA 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 492
Eam1104I CTCTTC 3 cut(s) 201, 708, 856
EarI CTCTTC 3 cut(s) 201, 708, 856
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 2 cut(s) 495, 1049
Eco24I GRGCYC 2 cut(s) 418, 917
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 926, 941
Eco53kI GAGCTC 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 327, 1025
Eco88I CYCGRG 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 54
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 495, 1049
EcoT38I GRGCYC 2 cut(s) 418, 917
ErhI CCWWGG 2 cut(s) 495, 1049
Esp3I CGTCTC 2 cut(s) 233, 500
FaeI CATG 4 cut(s) 667, 716, 760, 1053
FaqI GGGAC 1 cut(s) 423
FatI CATG 4 cut(s) 663, 712, 756, 1049
FauI CCCGC 3 cut(s) 758, 924, 994
FbaI TGATCA 2 cut(s) 28, 280
Fnu4HI GCNGC 6 cut(s) 492, 519, 658, 783, 867, 870
FokI GGATG 1 cut(s) 731
FriOI GRGCYC 2 cut(s) 418, 917
Fsp4HI GCNGC 6 cut(s) 492, 519, 658, 783, 867, 870
FspBI CTAG 1 cut(s) 605
GlaI GCGC 1 cut(s) 832
GluI GCNGC 6 cut(s) 492, 519, 658, 783, 867, 870
HaeII RGCGCY 1 cut(s) 834
HaeIII GGCC 1 cut(s) 494
HapII CCGG 3 cut(s) 148, 441, 939
HgaI GACGC 3 cut(s) 247, 663, 951
HhaI GCGC 1 cut(s) 833
Hin1II CATG 4 cut(s) 667, 716, 760, 1053
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HinfI GANTC 8 cut(s) 289, 370, 455, 731, 787, 848, 1031, 1045
HpaII CCGG 3 cut(s) 148, 441, 939
HphI GGTGA 1 cut(s) 987
Hpy188I TCNGA 6 cut(s) 307, 424, 847, 858, 1028, 1044
Hpy188III TCNNGA 7 cut(s) 134, 262, 284, 724, 735, 906, 966
Hpy99I CGWCG 2 cut(s) 63, 140
HpyAV CCTTC 7 cut(s) 36, 131, 404, 708, 755, 939, 1002
HpyCH4III ACNGT 6 cut(s) 167, 317, 428, 685, 825, 955
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 5 cut(s) 4, 590, 667, 782, 947
HpyF3I CTNAG 5 cut(s) 254, 267, 636, 733, 857
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 4 cut(s) 667, 716, 760, 1053
HspAI GCGC 1 cut(s) 831
Ksp22I TGATCA 2 cut(s) 28, 280
Kzo9I GATC 4 cut(s) 28, 280, 419, 433
LguI GCTCTTC 1 cut(s) 856
LmnI GCTCC 2 cut(s) 413, 912
Lsp1109I GCAGC 5 cut(s) 530, 669, 794, 878, 881
LweI GCATC 1 cut(s) 769
MaeI CTAG 1 cut(s) 605
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 4 cut(s) 274, 448, 876, 949
MalI GATC 4 cut(s) 30, 282, 421, 435
MbiI CCGCTC 1 cut(s) 919
MboI GATC 4 cut(s) 28, 280, 419, 433
MhlI GDGCHC 2 cut(s) 418, 917
MluCI AATT 5 cut(s) 54, 244, 294, 644, 1054
MlyI GAGTC 2 cut(s) 725, 1054
MseI TTAA 5 cut(s) 237, 378, 548, 618, 629
MslI CAYNNNNRTG 3 cut(s) 486, 717, 795
MspA1I CMGCKG 2 cut(s) 521, 1001
MspCI CTTAAG 1 cut(s) 617
MspI CCGG 3 cut(s) 148, 441, 939
MspR9I CCNGG 3 cut(s) 441, 442, 939
Mva1269I GAATGC 1 cut(s) 592
NciI CCSGG 3 cut(s) 441, 442, 939
NcoI CCATGG 1 cut(s) 1049
NdeII GATC 4 cut(s) 28, 280, 419, 433
NlaIII CATG 4 cut(s) 667, 716, 760, 1053
NlaIV GGNNCC 3 cut(s) 679, 894, 914
NmuCI GTSAC 3 cut(s) 448, 876, 949
NspI RCATGY 1 cut(s) 667
PciSI GCTCTTC 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 6 cut(s) 289, 370, 455, 787, 848, 1031
PkrI GCNGC 6 cut(s) 493, 520, 659, 784, 868, 871
PleI GAGTC 2 cut(s) 725, 1053
PpsI GAGTC 2 cut(s) 725, 1053
Psp124BI GAGCTC 1 cut(s) 418
PspN4I GGNNCC 3 cut(s) 679, 894, 914
PspPI GGNCC 2 cut(s) 926, 941
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 1 cut(s) 953
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 5 cut(s) 110, 141, 531, 751, 811
RsaNI GTAC 5 cut(s) 109, 140, 530, 750, 810
RseI CAYNNNNRTG 3 cut(s) 486, 717, 795
SacI GAGCTC 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 856
SaqAI TTAA 5 cut(s) 237, 378, 548, 618, 629
SatI GCNGC 6 cut(s) 492, 519, 658, 783, 867, 870
Sau3AI GATC 4 cut(s) 28, 280, 419, 433
Sau96I GGNCC 2 cut(s) 926, 941
SchI GAGTC 2 cut(s) 725, 1054
ScrFI CCNGG 3 cut(s) 441, 442, 939
SduI GDGCHC 2 cut(s) 418, 917
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 945
SgrAI CRCCGGYG 1 cut(s) 147
SinI GGWCC 2 cut(s) 926, 941
SmaI CCCGGG 1 cut(s) 442
SmiMI CAYNNNNRTG 3 cut(s) 486, 717, 795
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 5 cut(s) 54, 244, 294, 644, 1054
SsiI CCGC 4 cut(s) 491, 765, 917, 1001
SspMI CTAG 1 cut(s) 605
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 3 cut(s) 439, 440, 937
StyI CCWWGG 2 cut(s) 495, 1049
TaaI ACNGT 6 cut(s) 167, 317, 428, 685, 825, 955
TaiI ACGT 1 cut(s) 141
TaqI TCGA 6 cut(s) 9, 58, 418, 725, 820, 907
TasI AATT 5 cut(s) 54, 244, 294, 644, 1054
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 6 cut(s) 289, 370, 455, 787, 848, 1031
Tru1I TTAA 5 cut(s) 237, 378, 548, 618, 629
Tru9I TTAA 5 cut(s) 237, 378, 548, 618, 629
TscAI CASTG 1 cut(s) 958
TseFI GTSAC 3 cut(s) 448, 876, 949
TseI GCWGC 5 cut(s) 518, 657, 782, 866, 869
Tsp45I GTSAC 3 cut(s) 448, 876, 949
TspDTI ATGAA 4 cut(s) 191, 528, 828, 975
TspGWI ACGGA 4 cut(s) 48, 80, 467, 568
TspMI CCCGGG 1 cut(s) 440
TspRI CASTG 1 cut(s) 958
Vha464I CTTAAG 1 cut(s) 617
VpaK11BI GGWCC 2 cut(s) 926, 941
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 667
XmaI CCCGGG 1 cut(s) 440
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.