MD14G1190500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0011101
Physical Location & Seq
Reverse (-)
28163396 .. 28165539
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1190500.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGTGGCGATTTCGTTGTACAGAGGAAACCTCCACAGAGTTCCCGACGTACCGCGTCGGTGGCTTATGCCAACCCCTAAGATTTCCCTCAAGGACTTCAAATCCCTTTTAACCCGCCGCTCTGTAGCTCTCTCCCGCCTCCGCTCCGCCCTCCCCGACGCCGCCTCCTCTAACCCTGACCCTGATTTTGTCCTGGACCAGCTCAACGAAGCTCCAAAGGCGGGAGATTTGTCTCACCCCACGATTAAATTTGAAGCGCCGGAGAATGTTGATGATGATTGCGCAGCTGGGCCGTCCGGGGAGAAGAAGGATGGGAAGCAATCGGACGGTGCTGATTCTGCGGTGAAATCCGGCGGTGAGTCCGATTCGCCGCCTGCTCTTAAGCCCGATTTGATTGAGAAAGAGTCGGATGTTGCGGATGTTGGTGCGAGTTCACTGGCTGTGAAGGTTGATAAATTGGATGAAGTGGAAAACCCTAATTCTGAGAGATGCAACAAAGAGGAGGAGGAGGAGTTAAGTGACAATCAAAAGAGGAAAAGAGAAGTTGAGGAGAAGCTGCAGGTTTTGAATCAAAAGAAACATAATCTAGTTCAAGTGTTGAAGCAGATCTTAAATGCAGAGGAGGAGTTAAAGAGACGAAATTCCATGCAAGGAGTGGTGGTTCGCCCGTCTGTATCACTTCAAGTGGATGTAACAAATGACTCCGGTTCAATGACTAGGCACGCTGCTGCTAGGGTGGGCTCGGAGGCAAACCTTGAGATGGAAGGGGTTGAGAGCGATGAGCTTTCAAATCATAACATTCAATCTCGCCATATGTTCCGGATGAACAGCACATCCCCATCTTCAGAGTCTCCTCTCAGAAGGCCAGGTCATATTCAGCACAATGTGGTTCCACACCCCTCTCGAGCAAGTTTAGGGGCAACCGGTACTAGTCCATCACGCTTTGCTCCCATAGGGCAACTGGGGCATCCTGCAAATCTACCCACGTTATCCGTATCAGGAACAAATTACATGGCATCCTCTCCGTCCCCTGCGGCATCTGGCGGCACTTCTGCTTTCAGAGATGCTCGATTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

364

Amino Acids

39.32

Weight (kDa)

5.98

Isoelectric Point (pI)

65.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 550
AccBSI CCGCTC 2 cut(s) 120, 144
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 819
AcsI RAATTY 2 cut(s) 248, 640
AcuI CTGAAG 1 cut(s) 828
AcyI GRCGYC 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 886
AfaI GTAC 3 cut(s) 20, 51, 928
AfiI CCNNNNNNNGG 2 cut(s) 221, 760
AflII CTTAAG 1 cut(s) 380
AgeI ACCGGT 1 cut(s) 923
AgsI TTSAA 9 cut(s) 100, 254, 568, 593, 601, 683, 711, 789, 803
AhlI ACTAGT 1 cut(s) 929
AjnI CCWGG 2 cut(s) 192, 865
AloI GAACNNNNNNTCC 4 cut(s) 645, 677, 818, 850
AluBI AGCT 6 cut(s) 128, 202, 212, 287, 556, 784
AluI AGCT 6 cut(s) 128, 202, 212, 287, 556, 784
Alw26I GTCTC 3 cut(s) 237, 628, 855
Ama87I CYCGRG 1 cut(s) 903
Aor13HI TCCGGA 1 cut(s) 819
AoxI GGCC 2 cut(s) 290, 863
ApeKI GCWGC 4 cut(s) 284, 556, 725, 728
ApoI RAATTY 2 cut(s) 248, 640
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsiGI ACCGGT 1 cut(s) 923
AspLEI GCGC 2 cut(s) 259, 284
AspS9I GGNCC 2 cut(s) 196, 290
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 3 cut(s) 227, 355, 368
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 743
BbvI GCAGC 4 cut(s) 296, 543, 712, 715
BccI CCATC 4 cut(s) 305, 754, 847, 943
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 194, 867
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 237, 628, 855
BcuI ACTAGT 1 cut(s) 929
BfaI CTAG 4 cut(s) 587, 717, 732, 930
BfmI CTRYAG 2 cut(s) 123, 557
BfoI RGCGCY 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 550
BglII AGATCT 1 cut(s) 606
BisI GCNGC 9 cut(s) 118, 162, 285, 371, 557, 726, 729, 1035, 1045
BlsI GCNGC 9 cut(s) 119, 163, 286, 372, 558, 727, 730, 1036, 1046
Bme1390I CCNGG 3 cut(s) 194, 298, 867
Bme18I GGWCC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 196, 290
BmiI GGNNCC 1 cut(s) 891
BmrFI CCNGG 3 cut(s) 194, 298, 867
BmrI ACTGGG 1 cut(s) 971
BmsI GCATC 5 cut(s) 479, 976, 1025, 1046, 1054
BmuI ACTGGG 1 cut(s) 971
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpuEI CTTGAG 2 cut(s) 74, 776
BpuMI CCSGG 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 297, 1082
BsaWI WCCGGW 3 cut(s) 704, 819, 923
BsaXI ACNNNNNCTCC 6 cut(s) 149, 179, 497, 527, 645, 675
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 760
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 2 cut(s) 441, 966
BseAI TCCGGA 1 cut(s) 819
BseBI CCWGG 2 cut(s) 194, 867
BseDI CCNNGG 2 cut(s) 297, 1082
BseGI GGATG 9 cut(s) 316, 415, 424, 466, 694, 828, 833, 967, 1016
BseLI CCNNNNNNNGG 2 cut(s) 221, 760
BseMII CTCAG 2 cut(s) 474, 871
BseNI ACTGG 2 cut(s) 441, 966
BseRI GAGGAG 9 cut(s) 157, 515, 518, 521, 524, 563, 635, 638, 843
BseXI GCAGC 4 cut(s) 296, 543, 712, 715
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 292, 865
BshTI ACCGGT 1 cut(s) 923
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 6 cut(s) 260, 297, 351, 705, 820, 924
BslFI GGGAC 1 cut(s) 1012
BslI CCNNNNNNNGG 2 cut(s) 221, 760
BsmAI GTCTC 3 cut(s) 237, 628, 855
BsmBI CGTCTC 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 1012
BsnI GGCC 2 cut(s) 292, 865
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 1 cut(s) 743
Bsp13I TCCGGA 1 cut(s) 819
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 606
Bsp19I CCATGG 1 cut(s) 1082
BspANI GGCC 2 cut(s) 292, 865
BspCNI CTCAG 2 cut(s) 475, 870
BspEI TCCGGA 1 cut(s) 819
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 891
BspMAI CTGCAG 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 380
BsrBI CCGCTC 2 cut(s) 120, 144
BsrFI RCCGGY 1 cut(s) 923
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 2 cut(s) 441, 966
BssAI RCCGGY 1 cut(s) 923
BssECI CCNNGG 2 cut(s) 297, 1082
BssMI GATC 1 cut(s) 606
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 1082
Bst2UI CCWGG 2 cut(s) 194, 867
Bst4CI ACNGT 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 375, 723
BstDEI CTNAG 3 cut(s) 78, 483, 857
BstDSI CCRYGG 1 cut(s) 1082
BstF5I GGATG 9 cut(s) 316, 415, 424, 466, 694, 828, 833, 967, 1016
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 2 cut(s) 259, 284
BstKTI GATC 1 cut(s) 609
BstMAI GTCTC 3 cut(s) 237, 628, 855
BstMBI GATC 1 cut(s) 606
BstMWI GCNNNNNNNGC 4 cut(s) 61, 218, 338, 964
BstNI CCWGG 2 cut(s) 194, 867
BstSCI CCNGG 3 cut(s) 192, 296, 865
BstSFI CTRYAG 2 cut(s) 123, 557
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 4 cut(s) 296, 543, 712, 715
BstX2I RGATCY 1 cut(s) 606
BstXI CCANNNNNNTGG 1 cut(s) 1083
BstYI RGATCY 1 cut(s) 606
BsuRI GGCC 2 cut(s) 292, 865
BtgI CCRYGG 1 cut(s) 1082
BtgZI GCGATG 1 cut(s) 792
BtsCI GGATG 9 cut(s) 316, 415, 424, 466, 694, 828, 833, 967, 1016
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 2 cut(s) 375, 723
CfoI GCGC 2 cut(s) 259, 284
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 2 cut(s) 196, 290
CseI GACGC 2 cut(s) 44, 167
Csp6I GTAC 3 cut(s) 19, 50, 927
CspAI ACCGGT 1 cut(s) 923
CviAII CATG 3 cut(s) 646, 1012, 1083
CviQI GTAC 3 cut(s) 19, 50, 927
DdeI CTNAG 3 cut(s) 78, 483, 857
DpnI GATC 1 cut(s) 608
DpnII GATC 1 cut(s) 606
DraIII CACNNNGTG 1 cut(s) 886
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 1082
Eco24I GRGCYC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 828
Eco88I CYCGRG 1 cut(s) 903
EcoRII CCWGG 2 cut(s) 192, 865
EcoT14I CCWWGG 1 cut(s) 1082
EcoT38I GRGCYC 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 1082
Esp3I CGTCTC 1 cut(s) 628
FaeI CATG 3 cut(s) 649, 1015, 1086
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 1 cut(s) 1012
FatI CATG 3 cut(s) 645, 1011, 1082
FauI CCCGC 3 cut(s) 122, 143, 214
FauNDI CATATG 1 cut(s) 813
Fnu4HI GCNGC 9 cut(s) 118, 162, 285, 371, 557, 726, 729, 1035, 1045
FokI GGATG 9 cut(s) 323, 422, 431, 473, 701, 820, 835, 954, 1003
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 9 cut(s) 118, 162, 285, 371, 557, 726, 729, 1035, 1045
FspBI CTAG 4 cut(s) 587, 717, 732, 930
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 2 cut(s) 258, 283
GluI GCNGC 9 cut(s) 118, 162, 285, 371, 557, 726, 729, 1035, 1045
GsaI CCCAGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 2 cut(s) 292, 865
HapII CCGG 6 cut(s) 260, 297, 351, 705, 820, 924
HgaI GACGC 2 cut(s) 44, 167
HhaI GCGC 2 cut(s) 259, 284
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 3 cut(s) 649, 1015, 1086
Hin6I GCGC 2 cut(s) 257, 282
HinP1I GCGC 2 cut(s) 257, 282
HinfI GANTC 7 cut(s) 335, 359, 365, 404, 568, 701, 848
HpaII CCGG 6 cut(s) 260, 297, 351, 705, 820, 924
HphI GGTGA 3 cut(s) 227, 355, 368
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 8 cut(s) 325, 364, 409, 484, 745, 847, 860, 1061
Hpy188III TCNNGA 4 cut(s) 44, 820, 903, 999
Hpy8I GTNNAC 1 cut(s) 434
Hpy99I CGWCG 3 cut(s) 50, 60, 161
HpyAV CCTTC 4 cut(s) 301, 439, 758, 855
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 2 cut(s) 48, 986
HpyCH4V TGCA 5 cut(s) 492, 559, 617, 649, 974
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 218, 338, 964
HpyF3I CTNAG 3 cut(s) 78, 483, 857
HpySE526I ACGT 2 cut(s) 48, 986
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 3 cut(s) 649, 1015, 1086
HspAI GCGC 2 cut(s) 257, 282
Kpn2I TCCGGA 1 cut(s) 819
Kzo9I GATC 1 cut(s) 606
LmnI GCTCC 3 cut(s) 149, 217, 952
Lsp1109I GCAGC 4 cut(s) 296, 543, 712, 715
LweI GCATC 5 cut(s) 479, 976, 1025, 1046, 1054
MaeI CTAG 4 cut(s) 587, 717, 732, 930
MaeII ACGT 2 cut(s) 48, 986
MaeIII GTNAC 2 cut(s) 518, 691
MalI GATC 1 cut(s) 608
MbiI CCGCTC 2 cut(s) 120, 144
MboI GATC 1 cut(s) 606
MboII GAAGA 2 cut(s) 316, 834
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 6 cut(s) 248, 455, 478, 640, 1006, 1087
MlyI GAGTC 4 cut(s) 368, 413, 695, 857
MmeI TCCRAC 1 cut(s) 387
MroI TCCGGA 1 cut(s) 819
MseI TTAA 6 cut(s) 110, 246, 381, 515, 611, 629
MspA1I CMGCKG 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 6 cut(s) 260, 297, 351, 705, 820, 924
MspR9I CCNGG 3 cut(s) 194, 298, 867
MvaI CCWGG 2 cut(s) 194, 867
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 61, 218, 338, 964
NciI CCSGG 1 cut(s) 298
NcoI CCATGG 1 cut(s) 1082
NdeI CATATG 1 cut(s) 813
NdeII GATC 1 cut(s) 606
NlaIII CATG 3 cut(s) 649, 1015, 1086
NlaIV GGNNCC 1 cut(s) 891
NmuCI GTSAC 1 cut(s) 518
NsbI TGCGCA 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 903
PfeI GAWTC 3 cut(s) 335, 365, 568
PfoI TCCNGGA 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 923
PkrI GCNGC 9 cut(s) 119, 163, 286, 372, 558, 727, 730, 1036, 1046
PleI GAGTC 4 cut(s) 367, 412, 695, 856
PpsI GAGTC 4 cut(s) 367, 412, 695, 856
Psp6I CCWGG 2 cut(s) 192, 865
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 192, 865
PspN4I GGNNCC 1 cut(s) 891
PspPI GGNCC 2 cut(s) 196, 290
PstI CTGCAG 1 cut(s) 561
PsuI RGATCY 1 cut(s) 606
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 3 cut(s) 20, 51, 928
RsaNI GTAC 3 cut(s) 19, 50, 927
SaqAI TTAA 6 cut(s) 110, 246, 381, 515, 611, 629
SatI GCNGC 9 cut(s) 118, 162, 285, 371, 557, 726, 729, 1035, 1045
Sau3AI GATC 1 cut(s) 606
Sau96I GGNCC 2 cut(s) 196, 290
SchI GAGTC 4 cut(s) 368, 413, 695, 857
ScrFI CCNGG 3 cut(s) 194, 298, 867
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 5 cut(s) 479, 976, 1025, 1046, 1054
SfcI CTRYAG 2 cut(s) 123, 557
Sfr274I CTCGAG 1 cut(s) 903
SinI GGWCC 1 cut(s) 196
SlaI CTCGAG 1 cut(s) 903
SmlI CTYRAG 4 cut(s) 89, 380, 755, 903
SmoI CTYRAG 4 cut(s) 89, 380, 755, 903
SpeI ACTAGT 1 cut(s) 929
Sse9I AATT 6 cut(s) 248, 455, 478, 640, 1006, 1087
SspMI CTAG 4 cut(s) 587, 717, 732, 930
StyD4I CCNGG 3 cut(s) 192, 296, 865
StyI CCWWGG 1 cut(s) 1082
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 2 cut(s) 51, 989
TaqI TCGA 2 cut(s) 904, 1069
TasI AATT 6 cut(s) 248, 455, 478, 640, 1006, 1087
TatI WGTACW 1 cut(s) 18
TauI GCSGC 5 cut(s) 120, 164, 373, 1037, 1047
TfiI GAWTC 3 cut(s) 335, 365, 568
Tru1I TTAA 6 cut(s) 110, 246, 381, 515, 611, 629
Tru9I TTAA 6 cut(s) 110, 246, 381, 515, 611, 629
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 4 cut(s) 284, 556, 725, 728
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 2 cut(s) 477, 839
TspGWI ACGGA 2 cut(s) 982, 1014
TspRI CASTG 1 cut(s) 441
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 2 cut(s) 248, 640
XcmI CCANNNNNNNNNTGG 2 cut(s) 652, 958
XhoI CTCGAG 1 cut(s) 903
XspI CTAG 4 cut(s) 587, 717, 732, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.