Rh6BG096200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011101
Physical Location & Seq
Forward (+)
15020317 .. 15022510
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG096200.1

Sequence Viewer

Length: 522 bp
ATGCAGGATTCGGAATGGCCATGTTCTCTTGAGGTCTTGTGTGAAAAAGTAGTCAGAAAATTTCAGTGGGGAATCGTACTTGGTTATAAAATCTTAAATGCGGAGGAGGAATTGAAGAGACGGAGTAGTATACAAGGAATTGTGGTTCGTCCGATTGTTTCACTTCACGTGGATGTAACAAATGACTCTGGGTCGATGAATAGGCAACTTACTCCTAGGTTAGGCTCTAAGGCAAATATGAGTGGTGATATGGAAGGGGTTGAAGGCGATGAACTTTCAAATCATAACTTTCATCCTCGCCATATGCATCGGATGAGCAGTATGTCGCCTTCTTCAGAGTCTCCTCTTAGAAGGCCGGCCCATGTTCAGCACAGTGCGGTTAAACTTGTAAAATGCATTGTTCAAAATATGATTGTAGATATATCCTTCAATCAATTAGGAGGACTTTGTACACTACGCTTTCTTGAACAGATTTTAGTTGTAGGTCCTCTACAGATTTTTGGATTACTTCAGCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

173

Amino Acids

19.46

Weight (kDa)

7.76

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AccI GTMKAC 1 cut(s) 130
AciI CCGC 2 cut(s) 101, 377
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 2 cut(s) 59, 516
AcuI CTGAAG 2 cut(s) 318, 494
AcvI CACGTG 1 cut(s) 169
AfaI GTAC 2 cut(s) 78, 451
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 6 cut(s) 115, 263, 279, 404, 430, 467
AhdI GACNNNNNGTC 1 cut(s) 190
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
Alw26I GTCTC 2 cut(s) 112, 345
AoxI GGCC 3 cut(s) 17, 353, 357
ApoI RAATTY 2 cut(s) 59, 516
AspA2I CCTAGG 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 358, 485
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 485
AvrII CCTAGG 1 cut(s) 215
BalI TGGCCA 1 cut(s) 19
BarI GAAGNNNNNNTAC 2 cut(s) 313, 345
BbrPI CACGTG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 112, 345
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 491
BlnI CCTAGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 485
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 358, 485
BmsI GCATC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 3 cut(s) 178, 292, 318
BseLI CCNNNNNNNGG 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 119, 333
BshFI GGCC 3 cut(s) 19, 355, 359
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 2 cut(s) 112, 345
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 3 cut(s) 19, 355, 359
Bsp1407I TGTACA 1 cut(s) 449
BspACI CCGC 2 cut(s) 101, 377
BspANI GGCC 3 cut(s) 19, 355, 359
BsrFI RCCGGY 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 215
BssNAI GTATAC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 228, 347
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 178, 292, 318
BstMAI GTCTC 2 cut(s) 112, 345
BstSFI CTRYAG 1 cut(s) 491
BstZ17I GTATAC 1 cut(s) 131
BsuRI GGCC 3 cut(s) 19, 355, 359
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 178, 292, 318
BtsIMutI CAGTG 2 cut(s) 71, 379
Cac8I GCNNGC 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 358, 485
Csp6I GTAC 2 cut(s) 77, 450
CviAII CATG 2 cut(s) 21, 362
CviJI RGCY 4 cut(s) 19, 225, 355, 359
CviKI_1 RGCY 4 cut(s) 19, 225, 355, 359
CviQI GTAC 2 cut(s) 77, 450
DdeI CTNAG 2 cut(s) 228, 347
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 110
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 2 cut(s) 318, 494
Eco72I CACGTG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 215
EcoT22I ATGCAT 2 cut(s) 309, 398
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 2 cut(s) 24, 365
FatI CATG 2 cut(s) 20, 361
FauNDI CATATG 1 cut(s) 303
FblI GTMKAC 1 cut(s) 130
FokI GGATG 3 cut(s) 185, 279, 325
FseI GGCCGGCC 1 cut(s) 359
FspBI CTAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 19, 355, 359
HapII CCGG 1 cut(s) 356
Hin1II CATG 2 cut(s) 24, 365
HinfI GANTC 4 cut(s) 8, 72, 185, 338
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 131, 452
Hpy188I TCNGA 5 cut(s) 13, 56, 153, 312, 337
Hpy188III TCNNGA 2 cut(s) 29, 464
Hpy8I GTNNAC 2 cut(s) 131, 452
HpyAV CCTTC 5 cut(s) 248, 257, 339, 345, 436
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 4, 307, 396
HpyF3I CTNAG 2 cut(s) 228, 347
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 24, 365
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
LpnPI CCDG 2 cut(s) 174, 369
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 2 cut(s) 127, 324
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 5 cut(s) 59, 110, 138, 434, 516
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 2 cut(s) 179, 347
MnlI CCTC 7 cut(s) 25, 97, 100, 306, 354, 434, 498
Mox20I TGGCCA 1 cut(s) 19
Mph1103I ATGCAT 2 cut(s) 309, 398
MroNI GCCGGC 1 cut(s) 355
MscI TGGCCA 1 cut(s) 19
MseI TTAA 2 cut(s) 95, 381
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 19
MspI CCGG 1 cut(s) 356
NaeI GCCGGC 1 cut(s) 357
NdeI CATATG 1 cut(s) 303
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 24, 365
NsiI ATGCAT 2 cut(s) 309, 398
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 8, 72
PleI GAGTC 2 cut(s) 179, 346
PmaCI CACGTG 1 cut(s) 169
PmlI CACGTG 1 cut(s) 169
PpsI GAGTC 2 cut(s) 179, 346
Ppu21I YACGTR 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 485
PsiI TTATAA 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 485
PspCI CACGTG 1 cut(s) 169
PspPI GGNCC 2 cut(s) 358, 485
PspPPI RGGWCCY 1 cut(s) 485
RigI GGCCGGCC 1 cut(s) 359
RsaI GTAC 2 cut(s) 78, 451
RsaNI GTAC 2 cut(s) 77, 450
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 2 cut(s) 95, 381
Sau96I GGNCC 2 cut(s) 358, 485
SchI GAGTC 2 cut(s) 179, 347
SetI ASST 4 cut(s) 36, 171, 221, 487
SfaNI GCATC 1 cut(s) 316
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 5 cut(s) 59, 110, 138, 434, 516
SsiI CCGC 2 cut(s) 101, 377
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 194
TasI AATT 5 cut(s) 59, 110, 138, 434, 516
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 2 cut(s) 8, 72
Tru1I TTAA 2 cut(s) 95, 381
Tru9I TTAA 2 cut(s) 95, 381
TscAI CASTG 2 cut(s) 71, 379
TspDTI ATGAA 3 cut(s) 212, 281, 285
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 71, 379
VpaK11BI GGWCC 1 cut(s) 485
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 2 cut(s) 59, 516
XmaJI CCTAGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 1 cut(s) 216
Zsp2I ATGCAT 2 cut(s) 309, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.