pycom14g15820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011101
Physical Location & Seq
Reverse (-)
18302026 .. 18303717
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g15820.2

Sequence Viewer

Length: 1089 bp
ATGGTGGCGATTTCGTTGTACAGAGGAAACCTCCACAGAGTTCCCGACGTACCGCGTCGGTGGCTTATGCCAACCCCTAAAATTTCCCTCAAGGACTTCAAATCCCTTTTAACCCGCCGCTCTGTAGCTCTCTCCCGCCTCCGCTCCGCCCTCCCCGACGCCGCCTTCTCTAACCCTGACACTGATTTTGTCCGCGACCAGCTCAACGAAGCTCCAAAGGCGGGAAATTTGTCTCACCCCACGATTAAATTTGAAGCGCCGGAGAATGTTGATGCTGATTGCGAAGCTGGGCCGTCCGGGGAGAAGAAGGATGGGAAGCAATCGGACGGTGCTGATTCTGCGGTGAAATCCGGCGGTGCGTTCGATTCGCTGCCTGCTCTTAAGCCCGATTTGATCGAGAAAGAGTCGGATGTTGCGGATGTTGGTGCGAGTTCACTGGCTGTGAATGCTGATAAATTGGATGAAGTGGCAAACCCTAATTCTGAGAGATGCAACAAAGATGAGGAGGAGTTAAGTGACAATCAAAAGAGGAAAAGAGAAGTTGAGGAGAAGCTGCAGGTTTTGGATCAAAAGAAACATAATCTAGTTCAAGTGTTGAAGCAGATCTTAAATGCAGAGGAGGAGATAAAGAGACGAAATTCCATGCAAGGAGTGGTGGTTCGCCCGTCTGTATCACTTCAAGTGGATGTAACAAATGACTCCGGTTCAATGACTAGGCACGCTGCTGCTAGGTTGGGCTCGGAGGCAAACCTTGAGATGGAAGGGGTTGAGGGCGATGAGCTTTCAAATCATAACATTCAATCTCGCCATATGTTCTGGATGAACAGCACATCCCCATCTTCAGAGTCTCCTCTCAGAAGGCCAGCTCATATTCAGCACAATGTGGTTCCACACCCCTCTCGAGCAAGTTTAGGGGCAACCGGTACTAGTCCATCACGCTTTGCTCCCGTAGGGCAACTGGGGCATCCTGCAAATCTACCCACGTTATCCGTATCAGGAACAAATTACATGGCATCCTCTCCATCCCCTGCAACATCTGGCGGCACTTCTGCTTTCAGAGACGCTCGATTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

363

Amino Acids

39.26

Weight (kDa)

6.23

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AccBSI CCGCTC 2 cut(s) 120, 144
AccII CGCG 2 cut(s) 55, 195
AclWI GGATC 1 cut(s) 573
AcsI RAATTY 4 cut(s) 81, 226, 248, 637
AcuI CTGAAG 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 883
AfaI GTAC 3 cut(s) 20, 51, 925
AfiI CCNNNNNNNGG 2 cut(s) 221, 757
AflII CTTAAG 1 cut(s) 380
AgeI ACCGGT 1 cut(s) 920
AgsI TTSAA 8 cut(s) 100, 254, 590, 598, 680, 708, 786, 800
AhlI ACTAGT 1 cut(s) 926
AloI GAACNNNNNNTCC 4 cut(s) 642, 674, 815, 847
AluBI AGCT 7 cut(s) 128, 202, 212, 287, 553, 781, 866
AluI AGCT 7 cut(s) 128, 202, 212, 287, 553, 781, 866
Alw26I GTCTC 4 cut(s) 237, 625, 852, 1053
AlwI GGATC 1 cut(s) 573
Ama87I CYCGRG 1 cut(s) 900
AoxI GGCC 2 cut(s) 290, 860
ApeKI GCWGC 4 cut(s) 370, 553, 722, 725
ApoI RAATTY 4 cut(s) 81, 226, 248, 637
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsiGI ACCGGT 1 cut(s) 920
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 227, 355
AvaI CYCGRG 1 cut(s) 900
BanII GRGCYC 1 cut(s) 740
BbvI GCAGC 4 cut(s) 357, 540, 709, 712
BccI CCATC 5 cut(s) 305, 751, 844, 940, 1030
BceAI ACGGC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 237, 625, 852, 1053
BcuI ACTAGT 1 cut(s) 926
BfaI CTAG 4 cut(s) 584, 714, 729, 927
BfmI CTRYAG 2 cut(s) 123, 554
BfoI RGCGCY 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 547
BglII AGATCT 1 cut(s) 603
BisI GCNGC 7 cut(s) 118, 162, 371, 554, 723, 726, 1042
BlsI GCNGC 7 cut(s) 119, 163, 372, 555, 724, 727, 1043
Bme1390I CCNGG 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 888
BmrFI CCNGG 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 968
BmsI GCATC 4 cut(s) 262, 479, 973, 1022
BmuI ACTGGG 1 cut(s) 968
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpuEI CTTGAG 2 cut(s) 74, 773
BpuMI CCSGG 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 297, 1079
BsaWI WCCGGW 2 cut(s) 701, 920
BsaXI ACNNNNNCTCC 2 cut(s) 642, 672
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 757
Bse118I RCCGGY 1 cut(s) 920
Bse1I ACTGG 2 cut(s) 441, 963
BseDI CCNNGG 2 cut(s) 297, 1079
BseLI CCNNNNNNNGG 2 cut(s) 221, 757
BseMII CTCAG 2 cut(s) 474, 868
BseNI ACTGG 2 cut(s) 441, 963
BseRI GAGGAG 6 cut(s) 518, 521, 560, 632, 635, 840
BseXI GCAGC 4 cut(s) 357, 540, 709, 712
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 55, 195
BshFI GGCC 2 cut(s) 292, 862
BshTI ACCGGT 1 cut(s) 920
BsiHKCI CYCGRG 1 cut(s) 900
BsiSI CCGG 5 cut(s) 260, 297, 351, 702, 921
BslI CCNNNNNNNGG 2 cut(s) 221, 757
BsmAI GTCTC 4 cut(s) 237, 625, 852, 1053
BsmBI CGTCTC 2 cut(s) 625, 1053
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 2 cut(s) 292, 862
BsoBI CYCGRG 1 cut(s) 900
Bsp1286I GDGCHC 1 cut(s) 740
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 3 cut(s) 393, 565, 603
Bsp19I CCATGG 1 cut(s) 1079
BspANI GGCC 2 cut(s) 292, 862
BspCNI CTCAG 2 cut(s) 475, 867
BspFNI CGCG 2 cut(s) 55, 195
BspLI GGNNCC 1 cut(s) 888
BspMAI CTGCAG 1 cut(s) 558
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 1 cut(s) 573
BspTI CTTAAG 1 cut(s) 380
BsrBI CCGCTC 2 cut(s) 120, 144
BsrFI RCCGGY 1 cut(s) 920
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 2 cut(s) 441, 963
BssAI RCCGGY 1 cut(s) 920
BssECI CCNNGG 2 cut(s) 297, 1079
BssMI GATC 3 cut(s) 393, 565, 603
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 1079
Bst4CI ACNGT 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 18
BstC8I GCNNGC 3 cut(s) 375, 720, 864
BstDEI CTNAG 2 cut(s) 483, 854
BstDSI CCRYGG 1 cut(s) 1079
BstFNI CGCG 2 cut(s) 55, 195
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 396, 568, 606
BstMAI GTCTC 4 cut(s) 237, 625, 852, 1053
BstMBI GATC 3 cut(s) 393, 565, 603
BstMWI GCNNNNNNNGC 5 cut(s) 61, 218, 338, 446, 961
BstSCI CCNGG 1 cut(s) 296
BstSFI CTRYAG 2 cut(s) 123, 554
BstUI CGCG 2 cut(s) 55, 195
BstV1I GCAGC 4 cut(s) 357, 540, 709, 712
BstX2I RGATCY 1 cut(s) 603
BstXI CCANNNNNNTGG 1 cut(s) 1080
BstYI RGATCY 1 cut(s) 603
BsuRI GGCC 2 cut(s) 292, 862
BtgI CCRYGG 1 cut(s) 1079
BtgZI GCGATG 1 cut(s) 789
BtsIMutI CAGTG 2 cut(s) 180, 434
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 375, 720, 864
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 920
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 3 cut(s) 44, 167, 1070
Csp6I GTAC 3 cut(s) 19, 50, 924
CspAI ACCGGT 1 cut(s) 920
CviAII CATG 3 cut(s) 643, 1009, 1080
CviQI GTAC 3 cut(s) 19, 50, 924
DdeI CTNAG 2 cut(s) 483, 854
DpnI GATC 3 cut(s) 395, 567, 605
DpnII GATC 3 cut(s) 393, 565, 603
DraIII CACNNNGTG 1 cut(s) 883
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 1079
Eco24I GRGCYC 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 900
EcoT14I CCWWGG 1 cut(s) 1079
EcoT38I GRGCYC 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 1079
Esp3I CGTCTC 2 cut(s) 625, 1053
FaeI CATG 3 cut(s) 646, 1012, 1083
FaiI YATR 9 cut(s) 68, 579, 644, 792, 810, 812, 870, 1010, 1081
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FatI CATG 3 cut(s) 642, 1008, 1079
FauI CCCGC 3 cut(s) 122, 143, 214
FauNDI CATATG 1 cut(s) 810
Fnu4HI GCNGC 7 cut(s) 118, 162, 371, 554, 723, 726, 1042
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 7 cut(s) 118, 162, 371, 554, 723, 726, 1042
FspBI CTAG 4 cut(s) 584, 714, 729, 927
GlaI GCGC 1 cut(s) 258
GluI GCNGC 7 cut(s) 118, 162, 371, 554, 723, 726, 1042
GsaI CCCAGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 2 cut(s) 292, 862
HapII CCGG 5 cut(s) 260, 297, 351, 702, 921
HgaI GACGC 3 cut(s) 44, 167, 1070
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 3 cut(s) 646, 1012, 1083
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 5 cut(s) 335, 365, 404, 698, 845
HpaII CCGG 5 cut(s) 260, 297, 351, 702, 921
HphI GGTGA 2 cut(s) 227, 355
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 7 cut(s) 325, 409, 484, 742, 844, 857, 1058
Hpy188III TCNNGA 5 cut(s) 44, 397, 817, 900, 996
Hpy8I GTNNAC 1 cut(s) 434
Hpy99I CGWCG 3 cut(s) 50, 60, 161
HpyAV CCTTC 4 cut(s) 175, 301, 755, 852
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 2 cut(s) 48, 983
HpyCH4V TGCA 6 cut(s) 492, 556, 614, 646, 971, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 218, 338, 446, 961
HpyF3I CTNAG 2 cut(s) 483, 854
HpySE526I ACGT 2 cut(s) 48, 983
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 3 cut(s) 646, 1012, 1083
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 3 cut(s) 393, 565, 603
LmnI GCTCC 3 cut(s) 149, 217, 949
Lsp1109I GCAGC 4 cut(s) 357, 540, 709, 712
LweI GCATC 4 cut(s) 262, 479, 973, 1022
MaeI CTAG 4 cut(s) 584, 714, 729, 927
MaeII ACGT 2 cut(s) 48, 983
MaeIII GTNAC 2 cut(s) 515, 688
MalI GATC 3 cut(s) 395, 567, 605
MbiI CCGCTC 2 cut(s) 120, 144
MboI GATC 3 cut(s) 393, 565, 603
MboII GAAGA 2 cut(s) 316, 831
MflI RGATCY 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 8 cut(s) 81, 226, 248, 455, 478, 637, 1003, 1084
MlyI GAGTC 3 cut(s) 413, 692, 854
MmeI TCCRAC 1 cut(s) 387
MseI TTAA 5 cut(s) 110, 246, 381, 512, 608
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 5 cut(s) 260, 297, 351, 702, 921
MspR9I CCNGG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 451
MvnI CGCG 2 cut(s) 55, 195
MwoI GCNNNNNNNGC 5 cut(s) 61, 218, 338, 446, 961
NciI CCSGG 1 cut(s) 298
NcoI CCATGG 1 cut(s) 1079
NdeI CATATG 1 cut(s) 810
NdeII GATC 3 cut(s) 393, 565, 603
NlaIII CATG 3 cut(s) 646, 1012, 1083
NlaIV GGNNCC 1 cut(s) 888
NmuCI GTSAC 1 cut(s) 515
PaeR7I CTCGAG 1 cut(s) 900
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 335, 365
PinAI ACCGGT 1 cut(s) 920
PkrI GCNGC 7 cut(s) 119, 163, 372, 555, 724, 727, 1043
PleI GAGTC 3 cut(s) 412, 692, 853
PpsI GAGTC 3 cut(s) 412, 692, 853
PspFI CCCAGC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 888
PspPI GGNCC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 558
PsuI RGATCY 1 cut(s) 603
RsaI GTAC 3 cut(s) 20, 51, 925
RsaNI GTAC 3 cut(s) 19, 50, 924
SaqAI TTAA 5 cut(s) 110, 246, 381, 512, 608
SatI GCNGC 7 cut(s) 118, 162, 371, 554, 723, 726, 1042
Sau3AI GATC 3 cut(s) 393, 565, 603
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 3 cut(s) 413, 692, 854
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 1 cut(s) 740
SfaNI GCATC 4 cut(s) 262, 479, 973, 1022
SfcI CTRYAG 2 cut(s) 123, 554
Sfr274I CTCGAG 1 cut(s) 900
SlaI CTCGAG 1 cut(s) 900
SmlI CTYRAG 4 cut(s) 89, 380, 752, 900
SmoI CTYRAG 4 cut(s) 89, 380, 752, 900
SpeI ACTAGT 1 cut(s) 926
Sse9I AATT 8 cut(s) 81, 226, 248, 455, 478, 637, 1003, 1084
SspMI CTAG 4 cut(s) 584, 714, 729, 927
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 1079
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 2 cut(s) 51, 986
TaqI TCGA 4 cut(s) 363, 396, 901, 1066
TasI AATT 8 cut(s) 81, 226, 248, 455, 478, 637, 1003, 1084
TatI WGTACW 1 cut(s) 18
TauI GCSGC 3 cut(s) 120, 164, 1044
TfiI GAWTC 2 cut(s) 335, 365
Tru1I TTAA 5 cut(s) 110, 246, 381, 512, 608
Tru9I TTAA 5 cut(s) 110, 246, 381, 512, 608
TscAI CASTG 2 cut(s) 187, 441
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 4 cut(s) 370, 553, 722, 725
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 477, 836
TspGWI ACGGA 1 cut(s) 979
TspRI CASTG 2 cut(s) 187, 441
Vha464I CTTAAG 1 cut(s) 380
XapI RAATTY 4 cut(s) 81, 226, 248, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XhoI CTCGAG 1 cut(s) 900
XspI CTAG 4 cut(s) 584, 714, 729, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.