Rh7CG033200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011101
Physical Location & Seq
Reverse (-)
2276021 .. 2276800
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG033200.1

Sequence Viewer

Length: 525 bp
ATGGTAAGGGAGTTGGTTTGTTGTGGTTTGCAGATCTTAAATGCGGAGGAGGAATTGAAGAGACGGAGTAGTATACAAGGAATTGTGGTTCGTCCGACTGTTTCACTTCACGTGGATGTAACAAATGACTCTGGGTCGATGAATAGGCAACTTACGCCTAGGTTAGGCTCTGAGGCGAATATGAGTGGTGATATGGAAGGGGTTGAAGGCGATGAGCTTTCAAATCATAACTTTCATCCTCGCCATATGCATCGGATGAACAGTATGTCGCCTTCTTCAGAGTCTCCTCTTAGAAGGCCGGCCTATGTTCAGCACAGTGCGGTTCCGCACCCCTCCCGGGCAAGTTTGGTGGCAACTGGTACTAGTCCTTCACGCTTTGCTCCCTCAGGGCACCAAGGGCCTCCTGCAAATTTGCCGACAGTATCTGCATCAGGAACAAATTTCGTTGCATCATCTCCATCCCCTGCAGCATCTGGAGGAACTTCTACTTTCAGAGACGCTCGGTTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

174

Amino Acids

18.58

Weight (kDa)

7.96

Isoelectric Point (pI)

76.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 390
AccI GTMKAC 1 cut(s) 73
AciI CCGC 3 cut(s) 44, 320, 326
AcsI RAATTY 2 cut(s) 409, 439
AcuI CTGAAG 1 cut(s) 261
AcvI CACGTG 1 cut(s) 112
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 2 cut(s) 164, 337
AgsI TTSAA 3 cut(s) 58, 206, 222
AhdI GACNNNNNGTC 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 362
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw26I GTCTC 3 cut(s) 55, 288, 489
AlwNI CAGNNNCTG 2 cut(s) 425, 473
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 3 cut(s) 296, 300, 398
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 2 cut(s) 409, 439
AspA2I CCTAGG 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 2 cut(s) 337, 338
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 336
AvrII CCTAGG 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 390
BarI GAAGNNNNNNTAC 4 cut(s) 256, 288, 352, 384
BbrPI CACGTG 1 cut(s) 112
BbvI GCAGC 1 cut(s) 479
BccI CCATC 1 cut(s) 466
BcnI CCSGG 2 cut(s) 337, 338
BcoDI GTCTC 3 cut(s) 55, 288, 489
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 2 cut(s) 159, 363
BfmI CTRYAG 1 cut(s) 465
BglII AGATCT 1 cut(s) 33
BisI GCNGC 1 cut(s) 468
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 337, 338
BmeRI GACNNNNNGTC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 324, 392
BmrFI CCNGG 2 cut(s) 337, 338
BmsI GCATC 4 cut(s) 259, 437, 458, 479
BpmI CTGGAG 1 cut(s) 495
BpuMI CCSGG 2 cut(s) 337, 338
BsaAI YACGTR 1 cut(s) 112
BsaJI CCNNGG 4 cut(s) 158, 336, 394, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 337
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 361
Bse21I CCTNAGG 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 158, 336, 394, 515
BseGI GGATG 4 cut(s) 121, 235, 261, 458
BseLI CCNNNNNNNGG 2 cut(s) 164, 337
BseMII CTCAG 2 cut(s) 162, 399
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 62, 276
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 1 cut(s) 479
BshFI GGCC 3 cut(s) 298, 302, 400
BshNI GGYRCC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 2 cut(s) 299, 337
BslI CCNNNNNNNGG 2 cut(s) 164, 337
BsmAI GTCTC 3 cut(s) 55, 288, 489
BsmBI CGTCTC 2 cut(s) 55, 489
BsnI GGCC 3 cut(s) 298, 302, 400
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 3 cut(s) 44, 320, 326
BspANI GGCC 3 cut(s) 298, 302, 400
BspCNI CTCAG 2 cut(s) 163, 398
BspLI GGNNCC 2 cut(s) 324, 392
BspMAI CTGCAG 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 4 cut(s) 158, 336, 394, 515
BssMI GATC 1 cut(s) 33
BssNAI GTATAC 1 cut(s) 74
BssT1I CCWWGG 3 cut(s) 158, 394, 515
Bst1107I GTATAC 1 cut(s) 74
Bst4CI ACNGT 4 cut(s) 100, 263, 317, 421
Bst6I CTCTTC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 3 cut(s) 171, 290, 385
BstDSI CCRYGG 1 cut(s) 515
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 121, 235, 261, 458
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 3 cut(s) 55, 288, 489
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 154, 397
BstSCI CCNGG 2 cut(s) 335, 336
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 516
BstYI RGATCY 1 cut(s) 33
BstZ17I GTATAC 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 385
BsuRI GGCC 3 cut(s) 298, 302, 400
BtgI CCRYGG 1 cut(s) 515
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 4 cut(s) 121, 235, 261, 458
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 2 cut(s) 425, 473
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 398
Cfr9I CCCGGG 1 cut(s) 336
CseI GACGC 1 cut(s) 506
Csp6I GTAC 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 1 cut(s) 516
CviJI RGCY 5 cut(s) 168, 217, 298, 302, 400
CviKI_1 RGCY 5 cut(s) 168, 217, 298, 302, 400
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 3 cut(s) 171, 290, 385
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
DriI GACNNNNNGTC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 53
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 3 cut(s) 158, 394, 515
Eco57I CTGAAG 1 cut(s) 261
Eco72I CACGTG 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 398
EcoT14I CCWWGG 3 cut(s) 158, 394, 515
EcoT22I ATGCAT 1 cut(s) 252
ErhI CCWWGG 3 cut(s) 158, 394, 515
Esp3I CGTCTC 2 cut(s) 55, 489
FaeI CATG 1 cut(s) 519
FaiI YATR 9 cut(s) 74, 182, 194, 228, 246, 248, 266, 306, 517
FatI CATG 1 cut(s) 515
FauNDI CATATG 1 cut(s) 246
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 4 cut(s) 128, 222, 268, 445
FseI GGCCGGCC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 159, 363
GluI GCNGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 3 cut(s) 298, 302, 400
HapII CCGG 2 cut(s) 299, 337
HgaI GACGC 1 cut(s) 506
Hin1II CATG 1 cut(s) 519
HinfI GANTC 2 cut(s) 128, 281
HpaII CCGG 2 cut(s) 299, 337
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 5 cut(s) 96, 172, 255, 280, 494
Hpy188III TCNNGA 2 cut(s) 432, 474
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 5 cut(s) 191, 200, 282, 288, 378
HpyCH4III ACNGT 4 cut(s) 100, 263, 317, 421
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 6 cut(s) 31, 250, 407, 428, 449, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 397
HpyF3I CTNAG 3 cut(s) 171, 290, 385
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 519
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 9 cut(s) 117, 312, 342, 350, 372, 417, 417, 459, 477
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 4 cut(s) 259, 437, 458, 479
MaeI CTAG 2 cut(s) 159, 363
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 2 cut(s) 70, 267
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 5 cut(s) 53, 81, 409, 439, 520
MlyI GAGTC 2 cut(s) 122, 290
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 9 cut(s) 40, 43, 166, 249, 297, 343, 394, 411, 470
Mph1103I ATGCAT 1 cut(s) 252
MroNI GCCGGC 1 cut(s) 298
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 2 cut(s) 299, 337
MspR9I CCNGG 2 cut(s) 337, 338
MwoI GCNNNNNNNGC 2 cut(s) 154, 397
NaeI GCCGGC 1 cut(s) 300
NciI CCSGG 2 cut(s) 337, 338
NcoI CCATGG 1 cut(s) 515
NdeI CATATG 1 cut(s) 246
NdeII GATC 1 cut(s) 33
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 1 cut(s) 519
NlaIV GGNNCC 2 cut(s) 324, 392
NsiI ATGCAT 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 300
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 2 cut(s) 122, 289
PmaCI CACGTG 1 cut(s) 112
PmlI CACGTG 1 cut(s) 112
PpsI GAGTC 2 cut(s) 122, 289
Ppu21I YACGTR 1 cut(s) 112
PspCI CACGTG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 324, 392
PspPI GGNCC 1 cut(s) 398
PstI CTGCAG 1 cut(s) 469
PstNI CAGNNNCTG 2 cut(s) 425, 473
PsuI RGATCY 1 cut(s) 33
RigI GGCCGGCC 1 cut(s) 302
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 2 cut(s) 122, 290
ScrFI CCNGG 2 cut(s) 337, 338
SduI GDGCHC 1 cut(s) 393
SetI ASST 3 cut(s) 114, 164, 219
SfaNI GCATC 4 cut(s) 259, 437, 458, 479
SfcI CTRYAG 1 cut(s) 465
SmaI CCCGGG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 114
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 5 cut(s) 53, 81, 409, 439, 520
SsiI CCGC 3 cut(s) 44, 320, 326
SspMI CTAG 2 cut(s) 159, 363
StyD4I CCNGG 2 cut(s) 335, 336
StyI CCWWGG 3 cut(s) 158, 394, 515
TaaI ACNGT 4 cut(s) 100, 263, 317, 421
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 137
TasI AATT 5 cut(s) 53, 81, 409, 439, 520
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 3 cut(s) 155, 224, 272
TspGWI ACGGA 1 cut(s) 79
TspMI CCCGGG 1 cut(s) 336
TspRI CASTG 1 cut(s) 322
XagI CCTNNNNNAGG 1 cut(s) 162
XapI RAATTY 2 cut(s) 409, 439
XmaI CCCGGG 1 cut(s) 336
XmaJI CCTAGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 2 cut(s) 159, 363
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.