FvH4_5g15910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011101
Physical Location & Seq
Forward (+)
9006153 .. 9008487
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15910.t1

Sequence Viewer

Length: 1068 bp
ATGGTGGCGATTTCATTATACAGAGGAAACCTCCACCGCGTCCCGGATGTGCCTCGCCGCTGGCTTATGCCGACTCCCAAAATTTCCTTGAAAGACTTCAAATCCCTCTTGAGCCGTCGCTCTAAAGCCCTCTCTCGCCACCGCTCCGCCGCCGCCGCTACCTCCTCTAACCCTAACCCTAACCCTAGTTTTGACCCTGAGCAGCCCAGTGAAGCCGCAAAGGTGGCCGCTTTGAATCACGAACCCAAGGTTAAGTTCGAAGCGCCGCCGGAGAAGGTTGTTGCCGATTGCGAAGCTGGGCCTTCCGGCGAGGTTAAGAACAAGAGACAACCGGAAGGCGGTGATGTTCCGGCGAAGGAGGCCGATTTGACTCTGGCTCTTAGAGCTGATTTGGCTGAGAAAGGTTGGGAAGATTCGGTGGTGGTGAAGGTAGAGAAAGTTGATCAATTGGAAAACCCTAATTCTGAGATAAAAGAAGTTGTGCTAGATGAAAAGCAGAAGAGGAAAAGGGAAGTGGAGGAGAAGCTGCAGGTTTTGAATCAAAAGAAGCATAATTTAGTACAAGTGTTGAAACAGATCTTGAATGCAGAGGAGGAATTAAAGAGACGGAGCAGTGCACAAGGAATTGTGGTTCGTCCGGCTGTTTCACTTCAGGTGGATGTAACAAATGATTCTGGGTCGATGAATAGGCAAGTTACTCCTAGGTTAGGCTCTGAGGCGAATATGAGTGGTGATATGGAAGGGGTTGAAGGGGATGAGCTTTCAAATCATAACTTCCATCCTCGCCATATGCATCGGATGAACAGTACATCACCTTCTTCAGAGTCTCCTCTTAGAAGGCCAGCCTATGTTCAGCACAGTGCGGTTCCACATCCCTCCCGGGCAAGTTTGGGGGCAACTGGTACTAGTCCTTCACGCTTTGCTCTCTCAGGGCACCTAGGGCCTCCTTCTAATCTGCCAACAGTATCTGCATCAGGAACAAACTTCATTGCATCCTCTCCGTCCCCTGCAGCATCCGGAGGAACTTCTACTTTCAGAGATGCACGGTTGCCAAGTCCATGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

356

Amino Acids

38.62

Weight (kDa)

9.32

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 933
AccBSI CCGCTC 1 cut(s) 144
AccII CGCG 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 1016
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 2 cut(s) 635, 804
AfaI GTAC 3 cut(s) 561, 808, 904
AfiI CCNNNNNNNGG 3 cut(s) 43, 338, 707
AgsI TTSAA 8 cut(s) 91, 100, 235, 538, 571, 583, 749, 765
AhlI ACTAGT 1 cut(s) 905
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 4 cut(s) 296, 386, 526, 760
AluI AGCT 4 cut(s) 296, 386, 526, 760
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 3 cut(s) 319, 598, 831
Alw44I GTGCAC 1 cut(s) 615
AlwNI CAGNNNCTG 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 879
Aor13HI TCCGGA 1 cut(s) 1016
AoxI GGCC 5 cut(s) 225, 299, 360, 839, 941
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 3 cut(s) 202, 526, 1010
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 95
AspA2I CCTAGG 2 cut(s) 701, 937
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 299, 941
AsuC2I CCSGG 3 cut(s) 44, 880, 881
AsuHPI GGTGA 4 cut(s) 353, 436, 743, 804
AsuII TTCGAA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 879
AvrII CCTAGG 2 cut(s) 701, 937
BaeGI GKGCMC 2 cut(s) 619, 936
BanI GGYRCC 1 cut(s) 933
BarI GAAGNNNNNNTAC 4 cut(s) 799, 831, 895, 927
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 3 cut(s) 214, 513, 1022
BccI CCATC 1 cut(s) 786
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 3 cut(s) 44, 880, 881
BcoDI GTCTC 3 cut(s) 319, 598, 831
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 6 cut(s) 186, 485, 702, 906, 938, 1066
BfmI CTRYAG 2 cut(s) 527, 1008
BfoI RGCGCY 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 576
BlnI CCTAGG 2 cut(s) 701, 937
Bme1390I CCNGG 3 cut(s) 44, 880, 881
BmeT110I CYCGRG 1 cut(s) 879
BmgT120I GGNCC 2 cut(s) 299, 941
BmiI GGNNCC 2 cut(s) 867, 935
BmrFI CCNGG 3 cut(s) 44, 880, 881
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 5 cut(s) 802, 980, 1001, 1022, 1030
BmuI ACTGGG 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 15, 47
Bpu10I CCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 3 cut(s) 44, 880, 881
BsaJI CCNNGG 5 cut(s) 246, 701, 879, 937, 1058
BsaWI WCCGGW 2 cut(s) 331, 1016
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 338, 707
Bse1I ACTGG 2 cut(s) 207, 904
Bse3DI GCAATG 1 cut(s) 987
BseAI TCCGGA 1 cut(s) 1016
BseDI CCNNGG 5 cut(s) 246, 701, 879, 937, 1058
BseGI GGATG 8 cut(s) 52, 664, 760, 778, 804, 871, 992, 1013
BseLI CCNNNNNNNGG 3 cut(s) 43, 338, 707
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 5 cut(s) 189, 387, 456, 705, 942
BseNI ACTGG 2 cut(s) 207, 904
BseRI GAGGAG 4 cut(s) 154, 533, 605, 819
BseSI GKGCMC 2 cut(s) 619, 936
BseXI GCAGC 3 cut(s) 214, 513, 1022
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 5 cut(s) 227, 301, 362, 841, 943
BshNI GGYRCC 1 cut(s) 933
BsiHKAI GWGCWC 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 8 cut(s) 44, 269, 306, 332, 350, 638, 880, 1017
BslFI GGGAC 2 cut(s) 26, 988
BslI CCNNNNNNNGG 3 cut(s) 43, 338, 707
BsmAI GTCTC 3 cut(s) 319, 598, 831
BsmBI CGTCTC 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 26, 988
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 5 cut(s) 227, 301, 362, 841, 943
BsoBI CYCGRG 1 cut(s) 879
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 619, 936
Bsp13I TCCGGA 1 cut(s) 1016
Bsp143I GATC 2 cut(s) 442, 576
Bsp19I CCATGG 1 cut(s) 1058
BspANI GGCC 5 cut(s) 227, 301, 362, 841, 943
BspCNI CTCAG 5 cut(s) 190, 388, 457, 706, 941
BspEI TCCGGA 1 cut(s) 1016
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 867, 935
BspMAI CTGCAG 2 cut(s) 531, 1012
BspMI ACCTGC 1 cut(s) 520
BspT104I TTCGAA 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 933
BsrBI CCGCTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 2 cut(s) 207, 904
BssECI CCNNGG 5 cut(s) 246, 701, 879, 937, 1058
BssMI GATC 2 cut(s) 442, 576
BssT1I CCWWGG 4 cut(s) 246, 701, 937, 1058
Bst4CI ACNGT 4 cut(s) 806, 860, 964, 1047
Bst6I CTCTTC 1 cut(s) 494
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 62, 843
BstDEI CTNAG 7 cut(s) 198, 380, 396, 465, 714, 833, 928
BstDSI CCRYGG 1 cut(s) 1058
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 8 cut(s) 52, 664, 760, 778, 804, 871, 992, 1013
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 2 cut(s) 445, 579
BstMAI GTCTC 3 cut(s) 319, 598, 831
BstMBI GATC 2 cut(s) 442, 576
BstMWI GCNNNNNNNGC 6 cut(s) 155, 224, 359, 383, 392, 940
BstSCI CCNGG 3 cut(s) 42, 878, 879
BstSFI CTRYAG 2 cut(s) 527, 1008
BstSLI GKGCMC 2 cut(s) 619, 936
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 214, 513, 1022
BstX2I RGATCY 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 1059
BstYI RGATCY 1 cut(s) 576
BsuRI GGCC 5 cut(s) 227, 301, 362, 841, 943
BtgI CCRYGG 1 cut(s) 1058
BtsCI GGATG 8 cut(s) 52, 664, 760, 778, 804, 871, 992, 1013
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 3 cut(s) 214, 619, 865
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 62, 843
CaiI CAGNNNCTG 1 cut(s) 968
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 299, 941
Cfr9I CCCGGG 1 cut(s) 879
CseI GACGC 1 cut(s) 28
Csp6I GTAC 3 cut(s) 560, 807, 903
CviAII CATG 1 cut(s) 1059
CviQI GTAC 3 cut(s) 560, 807, 903
DdeI CTNAG 7 cut(s) 198, 380, 396, 465, 714, 833, 928
DpnI GATC 2 cut(s) 444, 578
DpnII GATC 2 cut(s) 442, 576
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 4 cut(s) 246, 701, 937, 1058
Eco57I CTGAAG 2 cut(s) 635, 804
Eco88I CYCGRG 1 cut(s) 879
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 941
EcoT14I CCWWGG 4 cut(s) 246, 701, 937, 1058
EcoT22I ATGCAT 1 cut(s) 795
ErhI CCWWGG 4 cut(s) 246, 701, 937, 1058
Esp3I CGTCTC 1 cut(s) 598
FaeI CATG 1 cut(s) 1062
FaqI GGGAC 2 cut(s) 26, 988
FatI CATG 1 cut(s) 1058
FauNDI CATATG 1 cut(s) 789
FbaI TGATCA 1 cut(s) 442
FokI GGATG 8 cut(s) 59, 671, 765, 767, 811, 858, 979, 1000
FspBI CTAG 6 cut(s) 186, 485, 702, 906, 938, 1066
GlaI GCGC 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 5 cut(s) 227, 301, 362, 841, 943
HapII CCGG 8 cut(s) 44, 269, 306, 332, 350, 638, 880, 1017
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 265
Hin1II CATG 1 cut(s) 1062
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 7 cut(s) 73, 235, 370, 413, 538, 671, 824
HpaII CCGG 8 cut(s) 44, 269, 306, 332, 350, 638, 880, 1017
HphI GGTGA 4 cut(s) 353, 436, 743, 804
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 5 cut(s) 466, 715, 798, 823, 1037
Hpy188III TCNNGA 5 cut(s) 109, 239, 580, 975, 1017
Hpy8I GTNNAC 1 cut(s) 617
Hpy99I CGWCG 1 cut(s) 120
HpyCH4III ACNGT 4 cut(s) 806, 860, 964, 1047
HpyCH4V TGCA 8 cut(s) 529, 587, 617, 793, 971, 992, 1010, 1043
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 224, 359, 383, 392, 940
HpyF3I CTNAG 7 cut(s) 198, 380, 396, 465, 714, 833, 928
Hsp92II CATG 1 cut(s) 1062
HspAI GCGC 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 1016
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 2 cut(s) 442, 576
LmnI GCTCC 2 cut(s) 149, 609
Lsp1109I GCAGC 3 cut(s) 214, 513, 1022
LweI GCATC 5 cut(s) 802, 980, 1001, 1022, 1030
MaeI CTAG 6 cut(s) 186, 485, 702, 906, 938, 1066
MaeIII GTNAC 2 cut(s) 661, 694
MalI GATC 2 cut(s) 444, 578
MbiI CCGCTC 1 cut(s) 144
MboI GATC 2 cut(s) 442, 576
MboII GAAGA 3 cut(s) 422, 511, 810
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 2 cut(s) 619, 936
MluCI AATT 6 cut(s) 81, 446, 460, 553, 596, 624
MlyI GAGTC 3 cut(s) 67, 364, 833
Mph1103I ATGCAT 1 cut(s) 795
MroI TCCGGA 1 cut(s) 1016
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 3 cut(s) 252, 315, 599
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 8 cut(s) 44, 269, 306, 332, 350, 638, 880, 1017
MspR9I CCNGG 3 cut(s) 44, 880, 881
MunI CAATTG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 589
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 6 cut(s) 155, 224, 359, 383, 392, 940
NciI CCSGG 3 cut(s) 44, 880, 881
NcoI CCATGG 1 cut(s) 1058
NdeI CATATG 1 cut(s) 789
NdeII GATC 2 cut(s) 442, 576
NlaIII CATG 1 cut(s) 1062
NlaIV GGNNCC 2 cut(s) 867, 935
NsiI ATGCAT 1 cut(s) 795
NspV TTCGAA 1 cut(s) 258
PctI GAATGC 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 4 cut(s) 235, 413, 538, 671
PfoI TCCNGGA 1 cut(s) 42
PleI GAGTC 3 cut(s) 67, 364, 832
PpsI GAGTC 3 cut(s) 67, 364, 832
PspFI CCCAGC 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 867, 935
PspPI GGNCC 2 cut(s) 299, 941
PstI CTGCAG 2 cut(s) 531, 1012
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 1 cut(s) 576
RsaI GTAC 3 cut(s) 561, 808, 904
RsaNI GTAC 3 cut(s) 560, 807, 903
SaqAI TTAA 3 cut(s) 252, 315, 599
Sau3AI GATC 2 cut(s) 442, 576
Sau96I GGNCC 2 cut(s) 299, 941
SchI GAGTC 3 cut(s) 67, 364, 833
ScrFI CCNGG 3 cut(s) 44, 880, 881
SduI GDGCHC 2 cut(s) 619, 936
SfaNI GCATC 5 cut(s) 802, 980, 1001, 1022, 1030
SfcI CTRYAG 2 cut(s) 527, 1008
SfuI TTCGAA 1 cut(s) 258
SmaI CCCGGG 1 cut(s) 881
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SpeI ACTAGT 1 cut(s) 905
Sse9I AATT 6 cut(s) 81, 446, 460, 553, 596, 624
SspMI CTAG 6 cut(s) 186, 485, 702, 906, 938, 1066
StyD4I CCNGG 3 cut(s) 42, 878, 879
StyI CCWWGG 4 cut(s) 246, 701, 937, 1058
TaaI ACNGT 4 cut(s) 806, 860, 964, 1047
TaqI TCGA 2 cut(s) 258, 680
TasI AATT 6 cut(s) 81, 446, 460, 553, 596, 624
TatI WGTACW 2 cut(s) 559, 806
TauI GCSGC 7 cut(s) 60, 152, 155, 158, 218, 230, 268
TfiI GAWTC 4 cut(s) 235, 413, 538, 671
Tru1I TTAA 3 cut(s) 252, 315, 599
Tru9I TTAA 3 cut(s) 252, 315, 599
TscAI CASTG 3 cut(s) 214, 619, 865
TseI GCWGC 3 cut(s) 202, 526, 1010
TspDTI ATGAA 4 cut(s) 504, 698, 815, 976
TspGWI ACGGA 2 cut(s) 622, 990
TspMI CCCGGG 1 cut(s) 879
TspRI CASTG 3 cut(s) 214, 619, 865
VneI GTGCAC 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 1 cut(s) 81
XmaI CCCGGG 1 cut(s) 879
XmaJI CCTAGG 2 cut(s) 701, 937
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 6 cut(s) 186, 485, 702, 906, 938, 1066
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.