Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011101

Physical Location & Seq

Genomic Coordinates Forward (+)

56626893 .. 56630463

Gene Structure 3571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0430800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTCAACTGGGAAGACTGCTGGTAAGGCAATGCCCGGCGTTGCAGCACCACTGCTGCTCCTGCGTCACACTCAATCATCTCTTCTTCTCAACCTCACTTCCACTAAGCACAAACCCTAATTCCCGCCGCTCTTCTTCCCCGGTAATCTACTTAGCTACTCGCGGCGTCCATAAACTAGTCCGCGGACTCCGACGGCGCGACGCTCCTCCGGCACCGTCCGATCTCGACGGTAACAGCAGCGGTTCCGATTCGGAGTCGTCGATTACATATAAGAGCCGCAACGCCTTGAAACGCGACGCTCGGCGCGCCGTCCGGTGGGCTATGGACCTCGCGTCCTTCTCTACACCTCAGCTCAAATTGATTATCAGAGTGGCTTCTCTGGACCAAGATGTATTGGATGCTGTTACGTTAGTGAAGCGATTTGGGAATGATGTGCGAGAAGGAAAGCGAAGGCAGTTCAATTATATTGCAAAATTGCTACGAGATGCGGACCCTGAGTTGATGGATGCTTTGATTCGCGCTACAAAAGACTGCGACCAAAAGAAGTTGCAAGATTTATGTGGTTCGGAGGCATTGAGCATTGACGATGAGGAAGAAGAAGAAGAAGAAGAAGCTGAAGAATCTGATAACGAGGAAGAAGAGGGTTCTCACATTGATGTAGCAACCAGATGGGTTGAGGGTATGATCAATAAGGACACTAATATCACCAATGAAGTTTATTCAATTTCAAATGTTGAGTTTGACCGTCAGGAATTGCGGAAACTGGTCCGGAAAGTACATTCAGCTTTGGAACGCTCAAGCAATTCTGAGGAAAATAAGGAAAAGATTGATGAGGCGGTAGTGGGTGCCAAAAAATCACTCGCCAGGTTCCTACGTGCCCTTGCTAAAAGTAGCCTAATGATTACTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

304

Amino Acids

34.22

Weight (kDa)

5.97

Isoelectric Point (pI)

66.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DarP	PF04751	91 - 274	1.1e-25	Dual-action ribosomal maturation protein DarP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47850
fragaria_vesca	FvH4_5g15910 FvH4_5g15910
malus_domestica	MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica	Prupe.5G183400_v2.0.a1
pyrus_communis	pycom06g16380 pycom14g15820
rosa_chinensis	RchiOBHm_Chr7g0180141
rosa_laevigata	RLG00000005289
rosa_multiflora	Rmu_ssc0000119.1_g000036
rosa_roxburghii	Rroxscaffold_3G00273090
rosa_rugosa	Rorug06G0430800
rosa_samantha	Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana	Rw7G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	214, 848
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	7 cut(s)	165, 186, 201, 297, 309, 335, 522
AccIII	TCCGGA	1 cut(s)	771
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	780
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	4 cut(s)	292, 463, 726, 732
AhdI	GACNNNNNGTC	1 cut(s)	334
AhlI	ACTAGT	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	866
AluBI	AGCT	4 cut(s)	158, 355, 617, 788
AluI	AGCT	4 cut(s)	158, 355, 617, 788
Aor13HI	TCCGGA	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	46, 57, 240
AscI	GGCGCGCC	1 cut(s)	307
AspLEI	GCGC	4 cut(s)	201, 309, 311, 524
AspS9I	GGNCC	4 cut(s)	328, 385, 493, 769
AsuC2I	CCSGG	2 cut(s)	38, 143
AsuHPI	GGTGA	1 cut(s)	700
AvaII	GGWCC	4 cut(s)	328, 385, 493, 769
BaeGI	GKGCMC	1 cut(s)	883
BanI	GGYRCC	2 cut(s)	214, 848
BbsI	GAAGAC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	44, 58, 252
BccI	CCATC	2 cut(s)	499, 666
BceAI	ACGGC	2 cut(s)	212, 296
BciT130I	CCWGG	1 cut(s)	868
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	2 cut(s)	38, 143
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	911
BisI	GCNGC	6 cut(s)	47, 58, 130, 166, 241, 280
BlsI	GCNGC	6 cut(s)	48, 59, 131, 167, 242, 281
Bme1390I	CCNGG	3 cut(s)	38, 143, 868
Bme18I	GGWCC	4 cut(s)	328, 385, 493, 769
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgT120I	GGNCC	4 cut(s)	328, 385, 493, 769
BmiI	GGNNCC	5 cut(s)	216, 247, 495, 850, 872
BmrFI	CCNGG	3 cut(s)	38, 143, 868
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	3 cut(s)	391, 478, 499
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	784
BpuMI	CCSGG	2 cut(s)	38, 143
BsaAI	YACGTR	1 cut(s)	878
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	141, 184
BsaWI	WCCGGW	2 cut(s)	315, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	2 cut(s)	15, 771
Bse3DI	GCAATG	1 cut(s)	38
BseAI	TCCGGA	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	868
BseDI	CCNNGG	2 cut(s)	141, 184
BseGI	GGATG	2 cut(s)	406, 514
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	3 cut(s)	365, 489, 801
BseNI	ACTGG	2 cut(s)	15, 771
BsePI	GCGCGC	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	3 cut(s)	44, 58, 252
Bsh1236I	CGCG	7 cut(s)	165, 186, 201, 297, 309, 335, 522
BshNI	GGYRCC	2 cut(s)	214, 848
BsiSI	CCGG	5 cut(s)	38, 143, 212, 316, 772
BslI	CCNNNNNNNGG	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp13I	TCCGGA	1 cut(s)	771
Bsp143I	GATC	2 cut(s)	223, 687
BspCNI	CTCAG	3 cut(s)	364, 490, 802
BspEI	TCCGGA	1 cut(s)	771
BspFNI	CGCG	7 cut(s)	165, 186, 201, 297, 309, 335, 522
BspLI	GGNNCC	5 cut(s)	216, 247, 495, 850, 872
BspQI	GCTCTTC	1 cut(s)	139
BspT107I	GGYRCC	2 cut(s)	214, 848
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	15, 771
BssECI	CCNNGG	2 cut(s)	141, 184
BssHII	GCGCGC	1 cut(s)	307
BssMI	GATC	2 cut(s)	223, 687
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	868
Bst4CI	ACNGT	3 cut(s)	219, 233, 749
Bst6I	CTCTTC	3 cut(s)	89, 139, 636
BstACI	GRCGYC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	878
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	5 cut(s)	107, 154, 351, 498, 810
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	406, 514
BstFNI	CGCG	7 cut(s)	165, 186, 201, 297, 309, 335, 522
BstHHI	GCGC	4 cut(s)	201, 309, 311, 524
BstKTI	GATC	2 cut(s)	226, 690
BstMBI	GATC	2 cut(s)	223, 687
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 63, 212, 308
BstNI	CCWGG	1 cut(s)	868
BstSCI	CCNGG	3 cut(s)	36, 141, 866
BstSFI	CTRYAG	1 cut(s)	911
BstSLI	GKGCMC	1 cut(s)	883
BstUI	CGCG	7 cut(s)	165, 186, 201, 297, 309, 335, 522
BstV1I	GCAGC	3 cut(s)	44, 58, 252
BstV2I	GAAGAC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	406, 514
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	4 cut(s)	201, 309, 311, 524
Cfr13I	GGNCC	4 cut(s)	328, 385, 493, 769
Cfr42I	CCGCGG	1 cut(s)	187
CseI	GACGC	5 cut(s)	55, 157, 212, 308, 324
Csp6I	GTAC	1 cut(s)	779
CviJI	RGCY	9 cut(s)	5, 158, 279, 323, 355, 377, 617, 788, 897
CviKI_1	RGCY	9 cut(s)	5, 158, 279, 323, 355, 377, 617, 788, 897
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	5 cut(s)	107, 154, 351, 498, 810
DpnI	GATC	2 cut(s)	225, 689
DpnII	GATC	2 cut(s)	223, 687
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	3 cut(s)	89, 139, 636
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	3 cut(s)	89, 139, 636
Eco47I	GGWCC	4 cut(s)	328, 385, 493, 769
Eco57I	CTGAAG	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	866
FaiI	YATR	8 cut(s)	174, 271, 273, 326, 468, 562, 686, 913
FauI	CCCGC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	6 cut(s)	47, 58, 130, 166, 241, 280
FokI	GGATG	2 cut(s)	413, 521
Fsp4HI	GCNGC	6 cut(s)	47, 58, 130, 166, 241, 280
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	4 cut(s)	200, 308, 310, 523
GluI	GCNGC	6 cut(s)	47, 58, 130, 166, 241, 280
HapII	CCGG	5 cut(s)	38, 143, 212, 316, 772
HgaI	GACGC	5 cut(s)	55, 157, 212, 308, 324
HhaI	GCGC	4 cut(s)	201, 309, 311, 524
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	4 cut(s)	199, 307, 309, 522
HinP1I	GCGC	4 cut(s)	199, 307, 309, 522
HinfI	GANTC	5 cut(s)	189, 251, 257, 517, 623
HpaII	CCGG	5 cut(s)	38, 143, 212, 316, 772
HphI	GGTGA	1 cut(s)	700
Hpy188I	TCNGA	8 cut(s)	194, 223, 250, 256, 371, 571, 628, 811
Hpy188III	TCNNGA	4 cut(s)	227, 383, 752, 772
Hpy99I	CGWCG	5 cut(s)	198, 206, 233, 265, 302
HpyAV	CCTTC	3 cut(s)	349, 437, 447
HpyCH4III	ACNGT	3 cut(s)	219, 233, 749
HpyCH4IV	ACGT	2 cut(s)	410, 877
HpyCH4V	TGCA	3 cut(s)	46, 473, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 63, 212, 308
HpyF3I	CTNAG	5 cut(s)	107, 154, 351, 498, 810
HpySE526I	ACGT	2 cut(s)	410, 877
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	4 cut(s)	199, 307, 309, 522
Kpn2I	TCCGGA	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	687
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	223, 687
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	65, 211
Lsp1109I	GCAGC	3 cut(s)	44, 58, 252
LweI	GCATC	3 cut(s)	391, 478, 499
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	2 cut(s)	410, 877
MaeIII	GTNAC	3 cut(s)	67, 233, 406
MalI	GATC	2 cut(s)	225, 689
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	2 cut(s)	223, 687
MhlI	GDGCHC	1 cut(s)	883
MluCI	AATT	7 cut(s)	121, 359, 463, 476, 726, 755, 805
MlyI	GAGTC	2 cut(s)	183, 266
MmeI	TCCRAC	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	2 cut(s)	186, 243
MspI	CCGG	5 cut(s)	38, 143, 212, 316, 772
MspR9I	CCNGG	3 cut(s)	38, 143, 868
MvaI	CCWGG	1 cut(s)	868
MvnI	CGCG	7 cut(s)	165, 186, 201, 297, 309, 335, 522
MwoI	GCNNNNNNNGC	4 cut(s)	28, 63, 212, 308
NciI	CCSGG	2 cut(s)	38, 143
NdeII	GATC	2 cut(s)	223, 687
NlaIV	GGNNCC	5 cut(s)	216, 247, 495, 850, 872
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	67
PalAI	GGCGCGCC	1 cut(s)	307
PauI	GCGCGC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	251, 517, 623
PkrI	GCNGC	6 cut(s)	48, 59, 131, 167, 242, 281
PleI	GAGTC	2 cut(s)	183, 265
PpsI	GAGTC	2 cut(s)	183, 265
Ppu21I	YACGTR	1 cut(s)	878
Psp6I	CCWGG	1 cut(s)	866
PspGI	CCWGG	1 cut(s)	866
PspN4I	GGNNCC	5 cut(s)	216, 247, 495, 850, 872
PspPI	GGNCC	4 cut(s)	328, 385, 493, 769
PteI	GCGCGC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	657
SacII	CCGCGG	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	139
SatI	GCNGC	6 cut(s)	47, 58, 130, 166, 241, 280
Sau3AI	GATC	2 cut(s)	223, 687
Sau96I	GGNCC	4 cut(s)	328, 385, 493, 769
SchI	GAGTC	2 cut(s)	183, 266
ScrFI	CCNGG	3 cut(s)	38, 143, 868
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	3 cut(s)	391, 478, 499
SfcI	CTRYAG	1 cut(s)	911
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SgsI	GGCGCGCC	1 cut(s)	307
SinI	GGWCC	4 cut(s)	328, 385, 493, 769
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
SpeI	ACTAGT	1 cut(s)	178
Sse9I	AATT	7 cut(s)	121, 359, 463, 476, 726, 755, 805
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	3 cut(s)	36, 141, 866
TaaI	ACNGT	3 cut(s)	219, 233, 749
TaiI	ACGT	2 cut(s)	413, 880
TaqI	TCGA	2 cut(s)	228, 263
TasI	AATT	7 cut(s)	121, 359, 463, 476, 726, 755, 805
TatI	WGTACW	1 cut(s)	778
TauI	GCSGC	3 cut(s)	132, 168, 282
TfiI	GAWTC	3 cut(s)	251, 517, 623
TscAI	CASTG	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	46, 57, 240
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	729
TspRI	CASTG	1 cut(s)	59
VpaK11BI	GGWCC	4 cut(s)	328, 385, 493, 769
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.