Rh7AG031300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011101
Physical Location & Seq
Reverse (-)
2163837 .. 2168939
5103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG031300.1

Sequence Viewer

Length: 1059 bp
ATGGTGGCGATTTCGCTTTACAGAGGAAACCTCCACCGCGTCCCGGACGTCCCTCGCCGGTGGCTTATGCCGACCCCCAAAATTTCACTCAAAGACTTCAAATCCCTATTGAGCCGTCGCTCCAAAGCCCTCTCTCGCCACCGCTCCGCCACCTCCTCTAACCCTAACCCTAATTCTGACCATGACCAGCTCAGCGAAGCCGCAAAGGCGGGCGCTTTGATTCATGAACCCAAGGTTAAATTCGAAGCACCGCCGGAGAAGATTGTTGCCGATTGCGAAGCTGGGCCTTCCGGCGAGGTTAAGGAGGAGAAACGACCGGACGGAGATGATTTTCCGGCGAAAGAGTCCGAGTTGATTCTGGCTCTTAAAGCTGATTTGCCTGAGAAAGGTTGGGAAGATTCGGTGGCGGTGAAGGTTGAGAAAGTTGATCAATTGGAAAAGGAAAACCCTAATTCTGAGGTAAAAGAAGATGTATTAGATGACAAGCAGAAGAGGAAAAGAGAAGTGGAGGAGAAGCTGCAGGTTTTGAATCAAAAGAAGCATAATCTAGTACAAGTGTTGAAGCAGATCTTAAATGCGGAGGAGGAATTGAAGAGACGGAGTAGTATACAAGGAATTGTGGTTCGTTCGACTGTTTCACTTCACGTGGATGTAACAAATGACTCTGGGTCGATGAATAGGCAACTTACTCCTAGGTTAGGCTCTGAGGCAAATATGAGTGGTGATATGGAAGGGGTTGAAGGCGATGAACTTTCAAATCATAACTTTCATCCTCGCCATATGCATCGGATGAGCAGTATGTCGCCTTCTTCAGAGTCTCCTCTTAGAAGGCCGGCCCATGTTCAGCACAGTGCGGTTCCGCACCCCTCCCGGGCAAGTTTGGTGGCAACTGGTACTAGTCCTTCACGCTTTGCTCCCTCAGGGCACCAAGGGCCTCCTGCAAATTTGCCGACAGTATCTGCATCAGGAACAAATTTCGTTGCATCCTCTCCATCCCCTGCAGCATCTGGAGGAACTTCTACTTTCAGAGACGCTCGGTTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

352

Amino Acids

38.61

Weight (kDa)

8.51

Isoelectric Point (pI)

66.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 924
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 607
AccII CGCG 1 cut(s) 39
AcsI RAATTY 4 cut(s) 81, 239, 943, 973
AcuI CTGAAG 1 cut(s) 795
AcvI CACGTG 1 cut(s) 646
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 552, 895
AfiI CCNNNNNNNGG 4 cut(s) 43, 386, 698, 871
AgsI TTSAA 6 cut(s) 100, 529, 562, 592, 740, 756
AhdI GACNNNNNGTC 1 cut(s) 667
AhlI ACTAGT 1 cut(s) 896
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
AluBI AGCT 4 cut(s) 190, 281, 371, 517
AluI AGCT 4 cut(s) 190, 281, 371, 517
Alw26I GTCTC 3 cut(s) 589, 822, 1023
AlwNI CAGNNNCTG 2 cut(s) 959, 1007
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 4 cut(s) 284, 830, 834, 932
ApeKI GCWGC 2 cut(s) 517, 1001
ApoI RAATTY 4 cut(s) 81, 239, 943, 973
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 284, 835, 932
AsuC2I CCSGG 3 cut(s) 44, 871, 872
AsuHPI GGTGA 2 cut(s) 421, 734
AsuII TTCGAA 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 870
AvrII CCTAGG 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 919
BaeGI GKGCMC 1 cut(s) 927
BanI GGYRCC 1 cut(s) 924
BarI GAAGNNNNNNTAC 4 cut(s) 790, 822, 886, 918
BbrPI CACGTG 1 cut(s) 646
BbvI GCAGC 2 cut(s) 504, 1013
BccI CCATC 1 cut(s) 1000
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 3 cut(s) 44, 871, 872
BcoDI GTCTC 3 cut(s) 589, 822, 1023
BcuI ACTAGT 1 cut(s) 896
BfaI CTAG 3 cut(s) 548, 693, 897
BfmI CTRYAG 2 cut(s) 518, 999
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 511
BglI GCCNNNNNGGC 1 cut(s) 206
BglII AGATCT 1 cut(s) 567
BisI GCNGC 3 cut(s) 201, 518, 1002
BlnI CCTAGG 1 cut(s) 692
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 3 cut(s) 202, 519, 1003
Bme1390I CCNGG 3 cut(s) 44, 871, 872
BmeRI GACNNNNNGTC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 3 cut(s) 284, 835, 932
BmiI GGNNCC 2 cut(s) 858, 926
BmrFI CCNGG 3 cut(s) 44, 871, 872
BmsI GCATC 4 cut(s) 793, 971, 992, 1013
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 1029
Bpu1102I GCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 243
BpuMI CCSGG 3 cut(s) 44, 871, 872
BsaAI YACGTR 1 cut(s) 646
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 5 cut(s) 231, 692, 870, 928, 1049
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 386, 698, 871
Bse118I RCCGGY 2 cut(s) 57, 832
Bse1I ACTGG 1 cut(s) 895
Bse21I CCTNAGG 1 cut(s) 919
BseDI CCNNGG 5 cut(s) 231, 692, 870, 928, 1049
BseGI GGATG 5 cut(s) 655, 769, 795, 983, 992
BseLI CCNNNNNNNGG 4 cut(s) 43, 386, 698, 871
BseMII CTCAG 5 cut(s) 205, 372, 447, 696, 933
BseNI ACTGG 1 cut(s) 895
BseRI GAGGAG 5 cut(s) 145, 320, 524, 596, 810
BseSI GKGCMC 1 cut(s) 927
BseXI GCAGC 2 cut(s) 504, 1013
BseYI CCCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 4 cut(s) 286, 832, 836, 934
BshNI GGYRCC 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 833, 871
BslFI GGGAC 2 cut(s) 26, 35
BslI CCNNNNNNNGG 4 cut(s) 43, 386, 698, 871
BsmAI GTCTC 3 cut(s) 589, 822, 1023
BsmBI CGTCTC 2 cut(s) 589, 1023
BsmFI GGGAC 2 cut(s) 26, 35
BsnI GGCC 4 cut(s) 286, 832, 836, 934
BsoBI CYCGRG 1 cut(s) 870
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 927
Bsp143I GATC 2 cut(s) 427, 567
Bsp1720I GCTNAGC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 1049
BspANI GGCC 4 cut(s) 286, 832, 836, 934
BspCNI CTCAG 5 cut(s) 204, 373, 448, 697, 932
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 858, 926
BspMAI CTGCAG 2 cut(s) 522, 1003
BspMI ACCTGC 1 cut(s) 511
BspT104I TTCGAA 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 924
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 2 cut(s) 57, 832
BsrI ACTGG 1 cut(s) 895
BssAI RCCGGY 2 cut(s) 57, 832
BssECI CCNNGG 5 cut(s) 231, 692, 870, 928, 1049
BssMI GATC 2 cut(s) 427, 567
BssNAI GTATAC 1 cut(s) 608
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 4 cut(s) 231, 692, 928, 1049
Bst1107I GTATAC 1 cut(s) 608
Bst4CI ACNGT 3 cut(s) 634, 851, 955
Bst6I CTCTTC 2 cut(s) 485, 587
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 646
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 211, 834
BstDEI CTNAG 6 cut(s) 191, 381, 456, 705, 824, 919
BstDSI CCRYGG 1 cut(s) 1049
BstENI CCTNNNNNAGG 2 cut(s) 384, 696
BstF5I GGATG 5 cut(s) 655, 769, 795, 983, 992
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 2 cut(s) 430, 570
BstMAI GTCTC 3 cut(s) 589, 822, 1023
BstMBI GATC 2 cut(s) 427, 567
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 3 cut(s) 206, 368, 931
BstSCI CCNGG 3 cut(s) 42, 869, 870
BstSFI CTRYAG 2 cut(s) 518, 999
BstSLI GKGCMC 1 cut(s) 927
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 504, 1013
BstX2I RGATCY 1 cut(s) 567
BstXI CCANNNNNNTGG 1 cut(s) 1050
BstYI RGATCY 1 cut(s) 567
BstZ17I GTATAC 1 cut(s) 608
Bsu36I CCTNAGG 1 cut(s) 919
BsuRI GGCC 4 cut(s) 286, 832, 836, 934
BtgI CCRYGG 1 cut(s) 1049
BtgZI GCGATG 1 cut(s) 759
BtsCI GGATG 5 cut(s) 655, 769, 795, 983, 992
BtsIMutI CAGTG 1 cut(s) 856
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 2 cut(s) 211, 834
CaiI CAGNNNCTG 2 cut(s) 959, 1007
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 2 cut(s) 57, 832
Cfr13I GGNCC 3 cut(s) 284, 835, 932
Cfr9I CCCGGG 1 cut(s) 870
CseI GACGC 2 cut(s) 28, 1040
Csp6I GTAC 2 cut(s) 551, 894
CspCI CAANNNNNGTGG 2 cut(s) 864, 899
CviAII CATG 4 cut(s) 182, 224, 839, 1050
CviQI GTAC 2 cut(s) 551, 894
DdeI CTNAG 6 cut(s) 191, 381, 456, 705, 824, 919
DpnI GATC 2 cut(s) 429, 569
DpnII GATC 2 cut(s) 427, 567
DriI GACNNNNNGTC 1 cut(s) 667
Eam1104I CTCTTC 2 cut(s) 485, 587
Eam1105I GACNNNNNGTC 1 cut(s) 667
EarI CTCTTC 2 cut(s) 485, 587
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 4 cut(s) 231, 692, 928, 1049
Eco57I CTGAAG 1 cut(s) 795
Eco72I CACGTG 1 cut(s) 646
Eco81I CCTNAGG 1 cut(s) 919
Eco88I CYCGRG 1 cut(s) 870
EcoNI CCTNNNNNAGG 2 cut(s) 384, 696
EcoO109I RGGNCCY 1 cut(s) 932
EcoT14I CCWWGG 4 cut(s) 231, 692, 928, 1049
EcoT22I ATGCAT 1 cut(s) 786
ErhI CCWWGG 4 cut(s) 231, 692, 928, 1049
Esp3I CGTCTC 2 cut(s) 589, 1023
FaeI CATG 4 cut(s) 185, 227, 842, 1053
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 2 cut(s) 26, 35
FatI CATG 4 cut(s) 181, 223, 838, 1049
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 780
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 201, 518, 1002
FokI GGATG 5 cut(s) 662, 756, 802, 970, 979
FseI GGCCGGCC 1 cut(s) 836
Fsp4HI GCNGC 3 cut(s) 201, 518, 1002
FspBI CTAG 3 cut(s) 548, 693, 897
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 201, 518, 1002
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 1029
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 4 cut(s) 286, 832, 836, 934
HapII CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 833, 871
HgaI GACGC 2 cut(s) 28, 1040
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 185, 227, 842, 1053
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 7 cut(s) 220, 344, 355, 398, 529, 662, 815
HpaII CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 833, 871
HphI GGTGA 2 cut(s) 421, 734
Hpy166II GTNNAC 1 cut(s) 608
Hpy188I TCNGA 7 cut(s) 178, 349, 457, 706, 789, 814, 1028
Hpy188III TCNNGA 3 cut(s) 224, 966, 1008
Hpy8I GTNNAC 1 cut(s) 608
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 7 cut(s) 297, 406, 725, 734, 816, 822, 912
HpyCH4III ACNGT 3 cut(s) 634, 851, 955
HpyCH4IV ACGT 2 cut(s) 48, 645
HpyCH4V TGCA 6 cut(s) 520, 784, 941, 962, 983, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 368, 931
HpyF3I CTNAG 6 cut(s) 191, 381, 456, 705, 824, 919
HpySE526I ACGT 2 cut(s) 48, 645
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 185, 227, 842, 1053
HspAI GCGC 1 cut(s) 213
KroI GCCGGC 1 cut(s) 832
KroNI GCCGGC 1 cut(s) 834
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 427, 567
LmnI GCTCC 3 cut(s) 125, 149, 919
Lsp1109I GCAGC 2 cut(s) 504, 1013
LweI GCATC 4 cut(s) 793, 971, 992, 1013
MaeI CTAG 3 cut(s) 548, 693, 897
MaeII ACGT 2 cut(s) 48, 645
MaeIII GTNAC 1 cut(s) 652
MalI GATC 2 cut(s) 429, 569
MbiI CCGCTC 1 cut(s) 144
MboI GATC 2 cut(s) 427, 567
MboII GAAGA 6 cut(s) 271, 407, 479, 502, 604, 801
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 927
MlyI GAGTC 3 cut(s) 353, 656, 824
Mph1103I ATGCAT 1 cut(s) 786
MroNI GCCGGC 1 cut(s) 832
MseI TTAA 4 cut(s) 237, 300, 366, 572
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 833, 871
MspR9I CCNGG 3 cut(s) 44, 871, 872
MunI CAATTG 1 cut(s) 431
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 206, 368, 931
NaeI GCCGGC 1 cut(s) 834
NciI CCSGG 3 cut(s) 44, 871, 872
NcoI CCATGG 1 cut(s) 1049
NdeI CATATG 1 cut(s) 780
NdeII GATC 2 cut(s) 427, 567
NgoMIV GCCGGC 1 cut(s) 832
NlaIII CATG 4 cut(s) 185, 227, 842, 1053
NlaIV GGNNCC 2 cut(s) 858, 926
NsiI ATGCAT 1 cut(s) 786
NspV TTCGAA 1 cut(s) 243
PagI TCATGA 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 834
PfeI GAWTC 4 cut(s) 220, 355, 398, 529
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 3 cut(s) 202, 519, 1003
PleI GAGTC 3 cut(s) 352, 656, 823
PmaCI CACGTG 1 cut(s) 646
PmlI CACGTG 1 cut(s) 646
PpsI GAGTC 3 cut(s) 352, 656, 823
Ppu21I YACGTR 1 cut(s) 646
PspCI CACGTG 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 858, 926
PspPI GGNCC 3 cut(s) 284, 835, 932
PstI CTGCAG 2 cut(s) 522, 1003
PstNI CAGNNNCTG 2 cut(s) 959, 1007
PsuI RGATCY 1 cut(s) 567
RigI GGCCGGCC 1 cut(s) 836
RsaI GTAC 2 cut(s) 552, 895
RsaNI GTAC 2 cut(s) 551, 894
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 4 cut(s) 237, 300, 366, 572
SatI GCNGC 3 cut(s) 201, 518, 1002
Sau3AI GATC 2 cut(s) 427, 567
Sau96I GGNCC 3 cut(s) 284, 835, 932
SchI GAGTC 3 cut(s) 353, 656, 824
ScrFI CCNGG 3 cut(s) 44, 871, 872
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 4 cut(s) 793, 971, 992, 1013
SfcI CTRYAG 2 cut(s) 518, 999
SfuI TTCGAA 1 cut(s) 243
SgrAI CRCCGGYG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 872
SmiMI CAYNNNNRTG 1 cut(s) 648
SpeI ACTAGT 1 cut(s) 896
SspMI CTAG 3 cut(s) 548, 693, 897
StyD4I CCNGG 3 cut(s) 42, 869, 870
StyI CCWWGG 4 cut(s) 231, 692, 928, 1049
TaaI ACNGT 3 cut(s) 634, 851, 955
TaiI ACGT 2 cut(s) 51, 648
TaqI TCGA 3 cut(s) 243, 629, 671
TatI WGTACW 1 cut(s) 550
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 4 cut(s) 220, 355, 398, 529
Tru1I TTAA 4 cut(s) 237, 300, 366, 572
Tru9I TTAA 4 cut(s) 237, 300, 366, 572
TscAI CASTG 1 cut(s) 856
TseI GCWGC 2 cut(s) 517, 1001
TspDTI ATGAA 5 cut(s) 212, 240, 689, 758, 762
TspGWI ACGGA 2 cut(s) 336, 613
TspMI CCCGGG 1 cut(s) 870
TspRI CASTG 1 cut(s) 856
XagI CCTNNNNNAGG 2 cut(s) 384, 696
XapI RAATTY 4 cut(s) 81, 239, 943, 973
XmaI CCCGGG 1 cut(s) 870
XmaJI CCTAGG 1 cut(s) 692
XmiI GTMKAC 1 cut(s) 607
XspI CTAG 3 cut(s) 548, 693, 897
ZraI GACGTC 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.