Rroxscaffold_3G00273090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011101
Physical Location & Seq
Forward (+)
64993261 .. 64995492
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273090.1

Sequence Viewer

Length: 1074 bp
ATGGTGGCGATTTCGCTTTACAGAGGAAACCTCCACCGCGTCCCGGACGTGCCTCGCCGGTGGCTTATGCCGACCCCCAAAATTTCACTCAAAGACTTCAAATCCCTATTGAGCCGTCGCTCCAAAGCCCTCTCTCGCCACCGCTCCGCCTCCGCCGCCACCTCCTCTAACCCTAACCCTAATTCTGACCATGACCATGACCAGCTCAGCGAAGCCGCAAAGGCGGGCGCTTTGATTCATGAACCCAAGGTTAAATTTGAAGCACCGCCGGAGAAGATTGTTGCCGATTGCGAAGCTGGGCCTTCCGGCGAGGTTAAGGAGAAGAAACGACCGGACGGAGATGATTTTCCGGCGAAAGAGTCCGACTTGGTTCTGGCTCTTAAAGCTGATTTGCCTGAGAAAGGTTGGGAAGATTCGGTGGCGGTGAAGGTTGAGAAAGTTGATCAATTGGAAAAGGAAAACCCTAATTCGGAGGTAAAAGAAGATGTATTAGATGAAAAGCAGAAGAGGAAAAGAGAAGTGGAGGAGAAGCTGCAGGTTTTGAATCAAAAGAAGCATAATCTAGTACAAGTGTTGAAGCAGATCTTAAATGCGGAGGAGGAATTGAAGAGACGGAGTAGTATACAAGGAATTGTGGTTCGTCCGACTGTTTCACTTCACGTGGATGTAACAAATGACTCTGGGTCGATGAATAGGCAACTTACTCCTAGGTTAGGCTCTGAGGCAAATATGAGTGGTGATATGGAAGGGGTTGAAGGCGATGAGCTTTCAAATCATAACTTTCATCCTCGCCATATGCCTCGGATGAACAGTATGTCGCCTTCTTCAGAGTCTCCTCTTAGAAGGCCAGCCCATGTTCAGCACAGTGCGGCTCCACACCCCTCCCGGGCAAGTTTGGTGGCAACTGGTACTAGTCCTTCACGCTTTGCTCCCTCAGGGCACCAAGGGCCTCCTGCAAATTTGCTGACAGTATCTGCATCAGGAACAAATTTCGTTGTATCCTCTCCATCCCCTGCAGCATCTGGAGGAACTTCTACTTTCAGAGACGCTCGGTTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

357

Amino Acids

39.09

Weight (kDa)

8.81

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 526
AccB1I GGYRCC 1 cut(s) 939
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 622
AccII CGCG 1 cut(s) 39
AcsI RAATTY 4 cut(s) 81, 254, 958, 988
AcuI CTGAAG 1 cut(s) 810
AcvI CACGTG 1 cut(s) 661
AfaI GTAC 2 cut(s) 567, 910
AfiI CCNNNNNNNGG 5 cut(s) 43, 401, 469, 713, 886
AgsI TTSAA 7 cut(s) 100, 260, 544, 577, 607, 755, 771
AhdI GACNNNNNGTC 1 cut(s) 682
AhlI ACTAGT 1 cut(s) 911
AjiI CACGTC 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 621, 653
AluBI AGCT 5 cut(s) 205, 296, 386, 532, 766
AluI AGCT 5 cut(s) 205, 296, 386, 532, 766
Alw26I GTCTC 3 cut(s) 604, 837, 1038
AlwNI CAGNNNCTG 2 cut(s) 974, 1022
Ama87I CYCGRG 1 cut(s) 885
AoxI GGCC 3 cut(s) 299, 845, 947
ApeKI GCWGC 2 cut(s) 532, 1016
ApoI RAATTY 4 cut(s) 81, 254, 958, 988
AspA2I CCTAGG 1 cut(s) 707
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 299, 947
AsuC2I CCSGG 3 cut(s) 44, 886, 887
AsuHPI GGTGA 2 cut(s) 436, 749
AvaI CYCGRG 1 cut(s) 885
AvrII CCTAGG 1 cut(s) 707
AxyI CCTNAGG 1 cut(s) 934
BaeGI GKGCMC 1 cut(s) 942
BanI GGYRCC 1 cut(s) 939
BarI GAAGNNNNNNTAC 4 cut(s) 805, 837, 901, 933
BbrPI CACGTG 1 cut(s) 661
BbvI GCAGC 2 cut(s) 519, 1028
BccI CCATC 1 cut(s) 1015
BceAI ACGGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 1009
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 3 cut(s) 44, 886, 887
BcoDI GTCTC 3 cut(s) 604, 837, 1038
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 3 cut(s) 563, 708, 912
BfmI CTRYAG 2 cut(s) 533, 1014
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 526
BfuI GTATCC 1 cut(s) 1009
BglI GCCNNNNNGGC 1 cut(s) 221
BglII AGATCT 1 cut(s) 582
BisI GCNGC 5 cut(s) 156, 216, 533, 870, 1017
BlnI CCTAGG 1 cut(s) 707
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 5 cut(s) 157, 217, 534, 871, 1018
Bme1390I CCNGG 3 cut(s) 44, 886, 887
BmeRI GACNNNNNGTC 1 cut(s) 682
BmeT110I CYCGRG 1 cut(s) 885
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 299, 947
BmiI GGNNCC 2 cut(s) 873, 941
BmrFI CCNGG 3 cut(s) 44, 886, 887
BmsI GCATC 2 cut(s) 986, 1028
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 1044
Bpu1102I GCTNAGC 1 cut(s) 206
BpuMI CCSGG 3 cut(s) 44, 886, 887
BsaAI YACGTR 1 cut(s) 661
BsaJI CCNNGG 6 cut(s) 246, 707, 800, 885, 943, 1064
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 401, 469, 713, 886
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 910
Bse21I CCTNAGG 1 cut(s) 934
BseDI CCNNGG 6 cut(s) 246, 707, 800, 885, 943, 1064
BseGI GGATG 4 cut(s) 670, 784, 810, 1007
BseLI CCNNNNNNNGG 5 cut(s) 43, 401, 469, 713, 886
BseMII CTCAG 4 cut(s) 220, 387, 711, 948
BseNI ACTGG 1 cut(s) 910
BseRI GAGGAG 4 cut(s) 154, 539, 611, 825
BseSI GKGCMC 1 cut(s) 942
BseXI GCAGC 2 cut(s) 519, 1028
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 3 cut(s) 301, 847, 949
BshNI GGYRCC 1 cut(s) 939
BsiEI CGRYCG 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 7 cut(s) 44, 58, 269, 306, 332, 350, 886
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 5 cut(s) 43, 401, 469, 713, 886
BsmAI GTCTC 3 cut(s) 604, 837, 1038
BsmBI CGTCTC 2 cut(s) 604, 1038
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 3 cut(s) 301, 847, 949
BsoBI CYCGRG 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 942
Bsp143I GATC 2 cut(s) 442, 582
Bsp1720I GCTNAGC 1 cut(s) 206
Bsp19I CCATGG 1 cut(s) 1064
BspANI GGCC 3 cut(s) 301, 847, 949
BspCNI CTCAG 4 cut(s) 219, 388, 712, 947
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 873, 941
BspMAI CTGCAG 2 cut(s) 537, 1018
BspMI ACCTGC 1 cut(s) 526
BspT107I GGYRCC 1 cut(s) 939
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 1 cut(s) 910
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 6 cut(s) 246, 707, 800, 885, 943, 1064
BssMI GATC 2 cut(s) 442, 582
BssNAI GTATAC 1 cut(s) 623
BssT1I CCWWGG 4 cut(s) 246, 707, 943, 1064
Bst1107I GTATAC 1 cut(s) 623
Bst4CI ACNGT 4 cut(s) 649, 812, 866, 970
Bst6I CTCTTC 2 cut(s) 500, 602
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 226, 849
BstDEI CTNAG 5 cut(s) 206, 396, 720, 839, 934
BstDSI CCRYGG 1 cut(s) 1064
BstENI CCTNNNNNAGG 2 cut(s) 399, 711
BstF5I GGATG 4 cut(s) 670, 784, 810, 1007
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 2 cut(s) 445, 585
BstMAI GTCTC 3 cut(s) 604, 837, 1038
BstMBI GATC 2 cut(s) 442, 582
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 4 cut(s) 155, 221, 383, 946
BstSCI CCNGG 3 cut(s) 42, 884, 885
BstSFI CTRYAG 2 cut(s) 533, 1014
BstSLI GKGCMC 1 cut(s) 942
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 519, 1028
BstX2I RGATCY 1 cut(s) 582
BstXI CCANNNNNNTGG 1 cut(s) 1065
BstYI RGATCY 1 cut(s) 582
BstZ17I GTATAC 1 cut(s) 623
Bsu36I CCTNAGG 1 cut(s) 934
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 3 cut(s) 301, 847, 949
BtgI CCRYGG 1 cut(s) 1064
BtgZI GCGATG 1 cut(s) 774
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 4 cut(s) 670, 784, 810, 1007
BtsIMutI CAGTG 1 cut(s) 871
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 226, 849
CaiI CAGNNNCTG 2 cut(s) 974, 1022
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 299, 947
Cfr9I CCCGGG 1 cut(s) 885
CseI GACGC 2 cut(s) 28, 1055
Csp6I GTAC 2 cut(s) 566, 909
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviAII CATG 5 cut(s) 191, 197, 239, 854, 1065
CviQI GTAC 2 cut(s) 566, 909
DdeI CTNAG 5 cut(s) 206, 396, 720, 839, 934
DpnI GATC 2 cut(s) 444, 584
DpnII GATC 2 cut(s) 442, 582
DriI GACNNNNNGTC 1 cut(s) 682
Eam1104I CTCTTC 2 cut(s) 500, 602
Eam1105I GACNNNNNGTC 1 cut(s) 682
EarI CTCTTC 2 cut(s) 500, 602
EciI GGCGGA 2 cut(s) 136, 142
Eco130I CCWWGG 4 cut(s) 246, 707, 943, 1064
Eco57I CTGAAG 1 cut(s) 810
Eco72I CACGTG 1 cut(s) 661
Eco81I CCTNAGG 1 cut(s) 934
Eco88I CYCGRG 1 cut(s) 885
EcoNI CCTNNNNNAGG 2 cut(s) 399, 711
EcoO109I RGGNCCY 1 cut(s) 947
EcoT14I CCWWGG 4 cut(s) 246, 707, 943, 1064
ErhI CCWWGG 4 cut(s) 246, 707, 943, 1064
Esp3I CGTCTC 2 cut(s) 604, 1038
FaeI CATG 5 cut(s) 194, 200, 242, 857, 1068
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 1 cut(s) 26
FatI CATG 5 cut(s) 190, 196, 238, 853, 1064
FauI CCCGC 1 cut(s) 217
FauNDI CATATG 1 cut(s) 795
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 5 cut(s) 156, 216, 533, 870, 1017
FokI GGATG 4 cut(s) 677, 771, 817, 994
Fsp4HI GCNGC 5 cut(s) 156, 216, 533, 870, 1017
FspBI CTAG 3 cut(s) 563, 708, 912
GlaI GCGC 1 cut(s) 229
GluI GCNGC 5 cut(s) 156, 216, 533, 870, 1017
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 1044
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 3 cut(s) 301, 847, 949
HapII CCGG 7 cut(s) 44, 58, 269, 306, 332, 350, 886
HgaI GACGC 2 cut(s) 28, 1055
HhaI GCGC 1 cut(s) 230
Hin1II CATG 5 cut(s) 194, 200, 242, 857, 1068
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 6 cut(s) 235, 359, 413, 544, 677, 830
HpaII CCGG 7 cut(s) 44, 58, 269, 306, 332, 350, 886
HphI GGTGA 2 cut(s) 436, 749
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 8 cut(s) 187, 364, 472, 645, 721, 804, 829, 1043
Hpy188III TCNNGA 3 cut(s) 239, 981, 1023
Hpy8I GTNNAC 1 cut(s) 623
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 7 cut(s) 312, 421, 740, 749, 831, 837, 927
HpyCH4III ACNGT 4 cut(s) 649, 812, 866, 970
HpyCH4IV ACGT 2 cut(s) 48, 660
HpyCH4V TGCA 4 cut(s) 535, 956, 977, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 221, 383, 946
HpyF3I CTNAG 5 cut(s) 206, 396, 720, 839, 934
HpySE526I ACGT 2 cut(s) 48, 660
Hsp92II CATG 5 cut(s) 194, 200, 242, 857, 1068
HspAI GCGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 2 cut(s) 442, 582
LmnI GCTCC 4 cut(s) 125, 149, 877, 934
Lsp1109I GCAGC 2 cut(s) 519, 1028
LweI GCATC 2 cut(s) 986, 1028
MaeI CTAG 3 cut(s) 563, 708, 912
MaeII ACGT 2 cut(s) 48, 660
MaeIII GTNAC 1 cut(s) 667
MalI GATC 2 cut(s) 444, 584
MbiI CCGCTC 1 cut(s) 144
MboI GATC 2 cut(s) 442, 582
MboII GAAGA 7 cut(s) 286, 334, 422, 494, 517, 619, 816
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 1 cut(s) 942
MlyI GAGTC 3 cut(s) 368, 671, 839
MmeI TCCRAC 2 cut(s) 387, 668
MseI TTAA 4 cut(s) 252, 315, 381, 587
MslI CAYNNNNRTG 2 cut(s) 195, 663
MspI CCGG 7 cut(s) 44, 58, 269, 306, 332, 350, 886
MspR9I CCNGG 3 cut(s) 44, 886, 887
MunI CAATTG 1 cut(s) 446
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 4 cut(s) 155, 221, 383, 946
NciI CCSGG 3 cut(s) 44, 886, 887
NcoI CCATGG 1 cut(s) 1064
NdeI CATATG 1 cut(s) 795
NdeII GATC 2 cut(s) 442, 582
NlaIII CATG 5 cut(s) 194, 200, 242, 857, 1068
NlaIV GGNNCC 2 cut(s) 873, 941
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 3 cut(s) 235, 413, 544
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 5 cut(s) 157, 217, 534, 871, 1018
PleI GAGTC 3 cut(s) 367, 671, 838
PmaCI CACGTG 1 cut(s) 661
PmlI CACGTG 1 cut(s) 661
PpsI GAGTC 3 cut(s) 367, 671, 838
Ppu21I YACGTR 1 cut(s) 661
PspCI CACGTG 1 cut(s) 661
PspFI CCCAGC 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 873, 941
PspPI GGNCC 2 cut(s) 299, 947
PstI CTGCAG 2 cut(s) 537, 1018
PstNI CAGNNNCTG 2 cut(s) 974, 1022
PsuI RGATCY 1 cut(s) 582
RsaI GTAC 2 cut(s) 567, 910
RsaNI GTAC 2 cut(s) 566, 909
RseI CAYNNNNRTG 2 cut(s) 195, 663
SaqAI TTAA 4 cut(s) 252, 315, 381, 587
SatI GCNGC 5 cut(s) 156, 216, 533, 870, 1017
Sau3AI GATC 2 cut(s) 442, 582
Sau96I GGNCC 2 cut(s) 299, 947
SchI GAGTC 3 cut(s) 368, 671, 839
ScrFI CCNGG 3 cut(s) 44, 886, 887
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 2 cut(s) 986, 1028
SfcI CTRYAG 2 cut(s) 533, 1014
SgrAI CRCCGGYG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 887
SmiMI CAYNNNNRTG 2 cut(s) 195, 663
SpeI ACTAGT 1 cut(s) 911
SspMI CTAG 3 cut(s) 563, 708, 912
StyD4I CCNGG 3 cut(s) 42, 884, 885
StyI CCWWGG 4 cut(s) 246, 707, 943, 1064
TaaI ACNGT 4 cut(s) 649, 812, 866, 970
TaiI ACGT 2 cut(s) 51, 663
TaqI TCGA 1 cut(s) 686
TatI WGTACW 1 cut(s) 565
TauI GCSGC 3 cut(s) 158, 218, 872
TfiI GAWTC 3 cut(s) 235, 413, 544
Tru1I TTAA 4 cut(s) 252, 315, 381, 587
Tru9I TTAA 4 cut(s) 252, 315, 381, 587
TscAI CASTG 1 cut(s) 871
TseI GCWGC 2 cut(s) 532, 1016
TspDTI ATGAA 6 cut(s) 227, 255, 510, 704, 773, 821
TspGWI ACGGA 2 cut(s) 351, 628
TspMI CCCGGG 1 cut(s) 885
TspRI CASTG 1 cut(s) 871
XagI CCTNNNNNAGG 2 cut(s) 399, 711
XapI RAATTY 4 cut(s) 81, 254, 958, 988
XmaI CCCGGG 1 cut(s) 885
XmaJI CCTAGG 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 622
XspI CTAG 3 cut(s) 563, 708, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.