pycom06g16380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011101
Physical Location & Seq
Reverse (-)
20664706 .. 20666480
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16380.4

Sequence Viewer

Length: 1098 bp
ATGGTGGCGATTTCGTTGTACAGAGGAAATCTCCACAGAGTTCCCGACGTACCACGTCGGTGGCTTATGCCAACCCCTAAAATCTCCCTTAAGGACTTCAAATCCCTTTTAACCCGCCGCTCTGTAGCTCTCTCCCGCCTCCGCTCCGGCCTCCCCGCCGCCGCCGCCGCCGCCGTCTCTTCTAACCCTAACCCTGATTTTATCCCGGGCCAGCTCAGCGAAGCTCCAAAGGCGGGAAATTTATCTCACCCCACGATTAAATTCGAAGCGCCGGAGAATGTTGCTGCTGATTGCGAAGCTGGGCCGTCCGGGAAGAAGAAGGATGGGAAGCAATCGGACGGTGCTGATTTGTCGGTGAAATCCGGCGGTGGGTCCGATTCACCGCCTGCTCTTAAGCCCGATTTGATCGAGAAAGGGTCGGATGTTGCGGATGTTGGTGCGAGTTCACTGCCTGTGAAGGTTGAGAAATTGGATGAAGTGGAAAACCCTAATTCTGAGAGATGCAACAAAGAGGAGGAGTTAAGTGATAAGCAAAAAAGGAAGAGAGAAGTTGAGGAGAAGCTGCAGGTTTTGAATCAGAAGAAACATAATCTGGTTCAAGTGTTGAAGCAGATCTTAAATGCAGAGGAAGAATTAAAGAGACGAAATTGTATGCAAGGTGTGGTGGTTCGCCCGTCTATATCACTTCAAGTTGATGTAACAAATGATTCCGGTTCAATGACTAGGCATGCTGCTGCTAGGTTGGGCTCAGAGGCGAATCTTGAGATGGAAGGGGTTGAGGGCGATGAGCTTTCAAATCATAACTTTCATTCTCGCCATATGTTCCGGATGAACAGCACATCCCCATCTTCAGAGTCTCCCCTCAGAAGGCCGGCTCACATTCAGCACAACGTGGTTCCACACCCCTCTCGAGCAAGTTTAGGGCCAACCGGCACTAGTCCATCGCGCTTTGCTCCCATTGGGCAACAGGGGCATCCTGCAAATCTACCCACTGTATCTGCATCAGGAACCAATTACATGGCATCCTCTCCATCCCCTGCAGCGTCCGGCGGCACTTCTGCTTTCAAAGACGCTCGATTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

366

Amino Acids

39.19

Weight (kDa)

9.15

Isoelectric Point (pI)

63.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccBSI CCGCTC 2 cut(s) 120, 144
AccII CGCG 1 cut(s) 946
AccIII TCCGGA 1 cut(s) 825
AcsI RAATTY 2 cut(s) 238, 260
AcuI CTGAAG 1 cut(s) 834
AdeI CACNNNGTG 1 cut(s) 892
AfaI GTAC 2 cut(s) 20, 51
AfiI CCNNNNNNNGG 3 cut(s) 233, 369, 867
AflII CTTAAG 2 cut(s) 89, 392
AgsI TTSAA 8 cut(s) 100, 574, 599, 607, 689, 717, 795, 1066
AhlI ACTAGT 1 cut(s) 935
AjiI CACGTC 1 cut(s) 56
AleI CACNNNNGTG 1 cut(s) 58
AloI GAACNNNNNNTCC 2 cut(s) 824, 856
AluBI AGCT 6 cut(s) 128, 214, 224, 299, 562, 790
AluI AGCT 6 cut(s) 128, 214, 224, 299, 562, 790
Alw26I GTCTC 3 cut(s) 181, 634, 861
Ama87I CYCGRG 2 cut(s) 205, 909
Aor13HI TCCGGA 1 cut(s) 825
AoxI GGCC 5 cut(s) 148, 208, 302, 869, 923
ApeKI GCWGC 5 cut(s) 284, 562, 731, 734, 1040
ApoI RAATTY 2 cut(s) 238, 260
AspLEI GCGC 2 cut(s) 271, 948
AspS9I GGNCC 4 cut(s) 208, 302, 372, 923
AsuC2I CCSGG 3 cut(s) 206, 207, 310
AsuHPI GGTGA 3 cut(s) 239, 367, 372
AsuII TTCGAA 1 cut(s) 264
AvaI CYCGRG 2 cut(s) 205, 909
AvaII GGWCC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 749
BbvI GCAGC 5 cut(s) 271, 549, 718, 721, 1052
BccI CCATC 5 cut(s) 317, 760, 853, 949, 1039
BceAI ACGGC 2 cut(s) 158, 289
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BcnI CCSGG 3 cut(s) 206, 207, 310
BcoDI GTCTC 3 cut(s) 181, 634, 861
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 3 cut(s) 723, 738, 936
BfmI CTRYAG 3 cut(s) 123, 563, 1038
BfoI RGCGCY 1 cut(s) 272
BfrI CTTAAG 2 cut(s) 89, 392
BfuAI ACCTGC 1 cut(s) 556
BglII AGATCT 1 cut(s) 612
BlpI GCTNAGC 1 cut(s) 215
Bme1390I CCNGG 3 cut(s) 206, 207, 310
Bme18I GGWCC 1 cut(s) 372
BmeT110I CYCGRG 2 cut(s) 205, 909
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 4 cut(s) 208, 302, 372, 923
BmiI GGNNCC 3 cut(s) 373, 897, 1009
BmrFI CCNGG 3 cut(s) 206, 207, 310
BmsI GCATC 4 cut(s) 491, 982, 1010, 1031
BplI GAGNNNNNCTC 2 cut(s) 15, 47
Bpu1102I GCTNAGC 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 782
BpuMI CCSGG 3 cut(s) 206, 207, 310
BsaJI CCNNGG 2 cut(s) 205, 1088
BsaWI WCCGGW 2 cut(s) 710, 825
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 369, 867
Bse118I RCCGGY 2 cut(s) 871, 929
BseAI TCCGGA 1 cut(s) 825
BseDI CCNNGG 2 cut(s) 205, 1088
BseGI GGATG 9 cut(s) 328, 427, 436, 478, 834, 839, 973, 1022, 1031
BseLI CCNNNNNNNGG 3 cut(s) 233, 369, 867
BseMII CTCAG 4 cut(s) 229, 486, 762, 877
BseRI GAGGAG 3 cut(s) 527, 530, 569
BseXI GCAGC 5 cut(s) 271, 549, 718, 721, 1052
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 946
BshFI GGCC 5 cut(s) 150, 210, 304, 871, 925
BsiHKCI CYCGRG 2 cut(s) 205, 909
BslI CCNNNNNNNGG 3 cut(s) 233, 369, 867
BsmAI GTCTC 3 cut(s) 181, 634, 861
BsmBI CGTCTC 2 cut(s) 181, 634
BsnI GGCC 5 cut(s) 150, 210, 304, 871, 925
BsoBI CYCGRG 2 cut(s) 205, 909
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 749
Bsp13I TCCGGA 1 cut(s) 825
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 2 cut(s) 405, 612
Bsp1720I GCTNAGC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 1088
BspANI GGCC 5 cut(s) 150, 210, 304, 871, 925
BspCNI CTCAG 4 cut(s) 228, 487, 761, 876
BspEI TCCGGA 1 cut(s) 825
BspFNI CGCG 1 cut(s) 946
BspLI GGNNCC 3 cut(s) 373, 897, 1009
BspMAI CTGCAG 2 cut(s) 567, 1042
BspMI ACCTGC 1 cut(s) 556
BspT104I TTCGAA 1 cut(s) 264
BspTI CTTAAG 2 cut(s) 89, 392
BsrBI CCGCTC 2 cut(s) 120, 144
BsrFI RCCGGY 2 cut(s) 871, 929
BsrGI TGTACA 1 cut(s) 18
BssAI RCCGGY 2 cut(s) 871, 929
BssECI CCNNGG 2 cut(s) 205, 1088
BssMI GATC 2 cut(s) 405, 612
BssT1I CCWWGG 1 cut(s) 1088
Bst4CI ACNGT 2 cut(s) 341, 994
Bst6I CTCTTC 2 cut(s) 184, 536
BstAFI CTTAAG 2 cut(s) 89, 392
BstAUI TGTACA 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 4 cut(s) 212, 387, 729, 873
BstDEI CTNAG 4 cut(s) 215, 495, 748, 863
BstDSI CCRYGG 1 cut(s) 1088
BstF5I GGATG 9 cut(s) 328, 427, 436, 478, 834, 839, 973, 1022, 1031
BstFNI CGCG 1 cut(s) 946
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 271, 948
BstKTI GATC 2 cut(s) 408, 615
BstMAI GTCTC 3 cut(s) 181, 634, 861
BstMBI GATC 2 cut(s) 405, 612
BstMWI GCNNNNNNNGC 6 cut(s) 164, 167, 170, 216, 230, 970
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 3 cut(s) 204, 205, 308
BstSFI CTRYAG 3 cut(s) 123, 563, 1038
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 5 cut(s) 271, 549, 718, 721, 1052
BstX2I RGATCY 1 cut(s) 612
BstXI CCANNNNNNTGG 3 cut(s) 60, 1018, 1089
BstYI RGATCY 1 cut(s) 612
BsuRI GGCC 5 cut(s) 150, 210, 304, 871, 925
BtgI CCRYGG 1 cut(s) 1088
BtgZI GCGATG 2 cut(s) 798, 927
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 9 cut(s) 328, 427, 436, 478, 834, 839, 973, 1022, 1031
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 446, 990
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 4 cut(s) 212, 387, 729, 873
CfoI GCGC 2 cut(s) 271, 948
Cfr10I RCCGGY 2 cut(s) 871, 929
Cfr13I GGNCC 4 cut(s) 208, 302, 372, 923
Cfr9I CCCGGG 1 cut(s) 205
CseI GACGC 2 cut(s) 1032, 1079
Csp6I GTAC 2 cut(s) 19, 50
CviAII CATG 3 cut(s) 728, 1018, 1089
CviQI GTAC 2 cut(s) 19, 50
DdeI CTNAG 4 cut(s) 215, 495, 748, 863
DpnI GATC 2 cut(s) 407, 614
DpnII GATC 2 cut(s) 405, 612
DraIII CACNNNGTG 1 cut(s) 892
Eam1104I CTCTTC 2 cut(s) 184, 536
EarI CTCTTC 2 cut(s) 184, 536
Eco130I CCWWGG 1 cut(s) 1088
Eco24I GRGCYC 1 cut(s) 749
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 834
Eco88I CYCGRG 2 cut(s) 205, 909
EcoT14I CCWWGG 1 cut(s) 1088
EcoT38I GRGCYC 1 cut(s) 749
ErhI CCWWGG 1 cut(s) 1088
Esp3I CGTCTC 2 cut(s) 181, 634
FaeI CATG 3 cut(s) 731, 1021, 1092
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FatI CATG 3 cut(s) 727, 1017, 1088
FauI CCCGC 4 cut(s) 122, 143, 163, 226
FauNDI CATATG 1 cut(s) 819
FokI GGATG 9 cut(s) 335, 434, 443, 485, 826, 841, 960, 1009, 1018
FriOI GRGCYC 1 cut(s) 749
FspBI CTAG 3 cut(s) 723, 738, 936
GlaI GCGC 2 cut(s) 270, 947
GsaI CCCAGC 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 5 cut(s) 150, 210, 304, 871, 925
HgaI GACGC 2 cut(s) 1032, 1079
HhaI GCGC 2 cut(s) 271, 948
Hin1II CATG 3 cut(s) 731, 1021, 1092
Hin6I GCGC 2 cut(s) 269, 946
HinP1I GCGC 2 cut(s) 269, 946
HinfI GANTC 5 cut(s) 377, 574, 707, 757, 854
HphI GGTGA 3 cut(s) 239, 367, 372
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 8 cut(s) 337, 376, 421, 496, 579, 751, 853, 866
Hpy188III TCNNGA 6 cut(s) 44, 409, 761, 826, 909, 1005
Hpy8I GTNNAC 1 cut(s) 446
Hpy99I CGWCG 2 cut(s) 50, 60
HpyAV CCTTC 4 cut(s) 313, 451, 764, 861
HpyCH4III ACNGT 2 cut(s) 341, 994
HpyCH4IV ACGT 3 cut(s) 48, 55, 891
HpyCH4V TGCA 7 cut(s) 504, 565, 623, 655, 980, 1001, 1040
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 167, 170, 216, 230, 970
HpyF3I CTNAG 4 cut(s) 215, 495, 748, 863
HpySE526I ACGT 3 cut(s) 48, 55, 891
Hsp92II CATG 3 cut(s) 731, 1021, 1092
HspAI GCGC 2 cut(s) 269, 946
Kpn2I TCCGGA 1 cut(s) 825
KroI GCCGGC 1 cut(s) 871
KroNI GCCGGC 1 cut(s) 873
Kzo9I GATC 2 cut(s) 405, 612
LmnI GCTCC 3 cut(s) 149, 229, 958
Lsp1109I GCAGC 5 cut(s) 271, 549, 718, 721, 1052
LweI GCATC 4 cut(s) 491, 982, 1010, 1031
MaeI CTAG 3 cut(s) 723, 738, 936
MaeII ACGT 3 cut(s) 48, 55, 891
MaeIII GTNAC 1 cut(s) 697
MalI GATC 2 cut(s) 407, 614
MbiI CCGCTC 2 cut(s) 120, 144
MboI GATC 2 cut(s) 405, 612
MboII GAAGA 7 cut(s) 171, 325, 328, 553, 592, 641, 840
MflI RGATCY 1 cut(s) 612
MhlI GDGCHC 1 cut(s) 749
MluCI AATT 8 cut(s) 238, 260, 467, 490, 632, 646, 1012, 1093
MlyI GAGTC 1 cut(s) 863
MmeI TCCRAC 1 cut(s) 399
MroI TCCGGA 1 cut(s) 825
MroNI GCCGGC 1 cut(s) 871
MseI TTAA 7 cut(s) 90, 110, 258, 393, 521, 617, 635
MslI CAYNNNNRTG 1 cut(s) 58
MspCI CTTAAG 2 cut(s) 89, 392
MspR9I CCNGG 3 cut(s) 206, 207, 310
MvnI CGCG 1 cut(s) 946
MwoI GCNNNNNNNGC 6 cut(s) 164, 167, 170, 216, 230, 970
NaeI GCCGGC 1 cut(s) 873
NciI CCSGG 3 cut(s) 206, 207, 310
NcoI CCATGG 1 cut(s) 1088
NdeI CATATG 1 cut(s) 819
NdeII GATC 2 cut(s) 405, 612
NgoMIV GCCGGC 1 cut(s) 871
NlaIII CATG 3 cut(s) 731, 1021, 1092
NlaIV GGNNCC 3 cut(s) 373, 897, 1009
NspI RCATGY 1 cut(s) 731
NspV TTCGAA 1 cut(s) 264
OliI CACNNNNGTG 1 cut(s) 58
PaeI GCATGC 1 cut(s) 731
PaeR7I CTCGAG 1 cut(s) 909
PdiI GCCGGC 1 cut(s) 873
PfeI GAWTC 4 cut(s) 377, 574, 707, 757
PfoI TCCNGGA 1 cut(s) 308
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 373, 897, 1009
PspPI GGNCC 4 cut(s) 208, 302, 372, 923
PstI CTGCAG 2 cut(s) 567, 1042
PsuI RGATCY 1 cut(s) 612
RsaI GTAC 2 cut(s) 20, 51
RsaNI GTAC 2 cut(s) 19, 50
RseI CAYNNNNRTG 1 cut(s) 58
SaqAI TTAA 7 cut(s) 90, 110, 258, 393, 521, 617, 635
Sau3AI GATC 2 cut(s) 405, 612
Sau96I GGNCC 4 cut(s) 208, 302, 372, 923
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 3 cut(s) 206, 207, 310
SduI GDGCHC 1 cut(s) 749
SfaNI GCATC 4 cut(s) 491, 982, 1010, 1031
SfcI CTRYAG 3 cut(s) 123, 563, 1038
Sfr274I CTCGAG 1 cut(s) 909
SfuI TTCGAA 1 cut(s) 264
SinI GGWCC 1 cut(s) 372
SlaI CTCGAG 1 cut(s) 909
SmaI CCCGGG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 58
SmlI CTYRAG 4 cut(s) 89, 392, 761, 909
SmoI CTYRAG 4 cut(s) 89, 392, 761, 909
SpeI ACTAGT 1 cut(s) 935
SphI GCATGC 1 cut(s) 731
Sse9I AATT 8 cut(s) 238, 260, 467, 490, 632, 646, 1012, 1093
SspMI CTAG 3 cut(s) 723, 738, 936
StyD4I CCNGG 3 cut(s) 204, 205, 308
StyI CCWWGG 1 cut(s) 1088
TaaI ACNGT 2 cut(s) 341, 994
TaiI ACGT 3 cut(s) 51, 58, 894
TaqI TCGA 4 cut(s) 264, 408, 910, 1075
TasI AATT 8 cut(s) 238, 260, 467, 490, 632, 646, 1012, 1093
TatI WGTACW 1 cut(s) 18
TauI GCSGC 7 cut(s) 120, 161, 164, 167, 170, 173, 1053
TfiI GAWTC 4 cut(s) 377, 574, 707, 757
Tru1I TTAA 7 cut(s) 90, 110, 258, 393, 521, 617, 635
Tru9I TTAA 7 cut(s) 90, 110, 258, 393, 521, 617, 635
TscAI CASTG 2 cut(s) 453, 997
TseI GCWGC 5 cut(s) 284, 562, 731, 734, 1040
TspDTI ATGAA 3 cut(s) 489, 797, 845
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 2 cut(s) 453, 997
Vha464I CTTAAG 2 cut(s) 89, 392
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 2 cut(s) 238, 260
XceI RCATGY 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 909
XmaI CCCGGG 1 cut(s) 205
XspI CTAG 3 cut(s) 723, 738, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.