Rh7BG031400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011101
Physical Location & Seq
Reverse (-)
2092630 .. 2093124
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG031400.1

Sequence Viewer

Length: 495 bp
ATGGTGGCGATTTCGCTTTACAGAGGAAACCTCCACCGCGTCCCTGACGTGCCTCGCCGGTGGCTTATGCCGACCCCCAAAATTTCACTCAAAGACTTCAAATCCCTATTGAGCCGTCGCTCCAAAGCCCTCTCTCGCCACCGCTCCGCCTCCGCTGCCACCTCCTCTAACCCTAACCCTAATTCTGACCATGACCAGCTCAGCGAAGCCGCAAAGGCGGGCGCTTTGATTCATGAACCCAAGGTTAAATTCGAAGCACCGCCGGAGAAGATTGTTGCCGATTGCGAAGCTGGGCCTTCCGGCGAGGTTAAGGAGAAGAAACGACCGGACGGAGATGATTTTCCGGCGAAAGATTCCGACTTGGTTCTGGCTCTTAAAGCTGATTTACCTGAGAAAGGTTGGGAAGATTCGGTGGCGGTGAAGGTTGAGAAAGTTGATCAATTGGAAAAGGAAAACCCTAATTCTGAGGTATGGAAGAAAATCTCACTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

164

Amino Acids

18.17

Weight (kDa)

8.59

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AccII CGCG 1 cut(s) 39
AciI CCGC 8 cut(s) 37, 142, 147, 153, 210, 218, 260, 416
AcsI RAATTY 2 cut(s) 81, 248
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 1 cut(s) 100
AjiI CACGTC 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 199, 290, 380
AluI AGCT 3 cut(s) 199, 290, 380
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 81, 248
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 430
AsuII TTCGAA 1 cut(s) 252
BbvI GCAGC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 436
BfoI RGCGCY 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 2 cut(s) 156, 210
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 2 cut(s) 157, 211
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 15, 47
Bpu1102I GCTNAGC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 3 cut(s) 214, 381, 456
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 326
BsiSI CCGG 5 cut(s) 58, 263, 300, 326, 344
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 252
Bsp143I GATC 1 cut(s) 436
Bsp1720I GCTNAGC 1 cut(s) 200
BspACI CCGC 8 cut(s) 37, 142, 147, 153, 210, 218, 260, 416
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 3 cut(s) 213, 382, 457
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 200, 390, 465
BstENI CCTNNNNNAGG 1 cut(s) 393
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 439
BstMBI GATC 1 cut(s) 436
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 3 cut(s) 155, 215, 377
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 295
BtrI CACGTC 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 28
CviAII CATG 2 cut(s) 191, 233
CviJI RGCY 9 cut(s) 64, 114, 128, 199, 209, 290, 295, 371, 380
CviKI_1 RGCY 9 cut(s) 64, 114, 128, 199, 209, 290, 295, 371, 380
DdeI CTNAG 3 cut(s) 200, 390, 465
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 194, 236
FaiI YATR 4 cut(s) 68, 192, 234, 472
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 190, 232
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 2 cut(s) 156, 210
Fsp4HI GCNGC 2 cut(s) 156, 210
GlaI GCGC 1 cut(s) 223
GluI GCNGC 2 cut(s) 156, 210
GsaI CCCAGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 295
HapII CCGG 5 cut(s) 58, 263, 300, 326, 344
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 194, 236
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 3 cut(s) 229, 353, 407
HpaII CCGG 5 cut(s) 58, 263, 300, 326, 344
HphI GGTGA 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 187, 358, 466
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 2 cut(s) 306, 415
HpyCH4IV ACGT 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 215, 377
HpyF3I CTNAG 3 cut(s) 200, 390, 465
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 194, 236
HspAI GCGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 2 cut(s) 125, 149
Lsp1109I GCAGC 1 cut(s) 142
MaeII ACGT 1 cut(s) 48
MalI GATC 1 cut(s) 438
MbiI CCGCTC 1 cut(s) 144
MboI GATC 1 cut(s) 436
MboII GAAGA 4 cut(s) 280, 328, 416, 487
MfeI CAATTG 1 cut(s) 440
MluCI AATT 5 cut(s) 81, 181, 248, 440, 460
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 9 cut(s) 17, 41, 63, 140, 160, 172, 175, 298, 460
MseI TTAA 3 cut(s) 246, 309, 375
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 5 cut(s) 58, 263, 300, 326, 344
MunI CAATTG 1 cut(s) 440
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 155, 215, 377
NdeII GATC 1 cut(s) 436
NlaIII CATG 2 cut(s) 194, 236
NspV TTCGAA 1 cut(s) 252
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 3 cut(s) 229, 353, 407
PkrI GCNGC 2 cut(s) 157, 211
PspFI CCCAGC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 246, 309, 375
SatI GCNGC 2 cut(s) 156, 210
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 252
SgrAI CRCCGGYG 1 cut(s) 57
Sse9I AATT 5 cut(s) 81, 181, 248, 440, 460
SsiI CCGC 8 cut(s) 37, 142, 147, 153, 210, 218, 260, 416
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 252
TasI AATT 5 cut(s) 81, 181, 248, 440, 460
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 3 cut(s) 229, 353, 407
Tru1I TTAA 3 cut(s) 246, 309, 375
Tru9I TTAA 3 cut(s) 246, 309, 375
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 221, 249
TspGWI ACGGA 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 2 cut(s) 81, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.