RLG00000005289

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011101
Physical Location & Seq
Forward (+)
66548043 .. 66549789
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005289

Sequence Viewer

Length: 1068 bp
ATGGTGGCGATTTCGCTATATAGAGGAAACCTCCACCGCGTCCCGGACGTGCCTCGCCGGTGGCTTATGCCGACCCCCAAAATTTCACTCAAAGACTTCAAATCCCTACTGAGCCGTCGCTCCAAAGCCCTCTCTCGCCACCGCTCCGCCTCCACCGCCACCTCCTCTAACCCTAACCCTAATTCTGACCATGACCAGCTCAGCGAAGCCGCAAAGGCGGGCGCTTTGATTCATGAACCCAAGGTTAAATTCGAAGCACCGCCGGAGAAGATTGTTGCCGATTGCGAAGCTGGGCCTTCCGGCGAGGTTAAGGAGAAGAAACGACCGGACGGAGATGATTTTATGGCGAAAGATTCCGACTTGGCTGTGGCTCTTAAAGCTGATTTGCCTGAGAAAGGTTGGGAAGATTCGGTGGCGGTGAAGGTTGAGAAAGTTGATCAATTGGAAAAGGAAAACCCTAATTCTGAGGTAAAAGAAGATGTATTGGATGAAAAGCAGAAGAGGAAAAGAGAAGTGGAGGAGAAGCTGCAGTTTTTGAATCAAAAGAAGCATAATCTAGTACAAGTGTTGAAGCAGATCTTAAATGCGGAGGAGGAATTGAAGAGACGGAGTAGTATACAAGGAATTGTGGTTCGTCCGACTGTTTCACTTCACATGGATGTAACAAATGACTCTGGGTCGATGAATAGGCAACTTACTCCTAGGTTAGGCTCTGAGGCGAATATGAGTGGTGATATGGAAGGGGTTGAAGGCGATGAGCTTTCAAATCATAACTTTCATCCTCGCCATATGCATCGGATGAACAGTATGTCGCCTTCTTCAGAGTCTCCTCTTAGAAGGCCAGCCTATGTTCAGCACAGTGCGGTTCCACACCCCTCCCGGGCAAGTTTGGTGGCAACTGGTACTAGTCCTTCACGCTTTGCTCCCTCAGGGCACCAAGGGCCTCCTGCAAATTTGGCAACAGTATCTGCATCAGGAACAAATTTCGTTGCATCCTCTCCATCCCCTGCAGCATCTGGAGGAACTTCTACTTTCAGAGACGCTCGGTTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

356

Amino Acids

38.95

Weight (kDa)

8.99

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 933
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 616
AccII CGCG 1 cut(s) 39
AcsI RAATTY 4 cut(s) 81, 248, 952, 982
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 2 cut(s) 561, 904
AfiI CCNNNNNNNGG 4 cut(s) 43, 395, 707, 880
AgsI TTSAA 6 cut(s) 100, 538, 571, 601, 749, 765
AhdI GACNNNNNGTC 1 cut(s) 676
AhlI ACTAGT 1 cut(s) 905
AjiI CACGTC 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 5 cut(s) 199, 290, 380, 526, 760
AluI AGCT 5 cut(s) 199, 290, 380, 526, 760
Alw26I GTCTC 3 cut(s) 598, 831, 1032
AlwNI CAGNNNCTG 2 cut(s) 968, 1016
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 3 cut(s) 293, 839, 941
ApeKI GCWGC 2 cut(s) 526, 1010
ApoI RAATTY 4 cut(s) 81, 248, 952, 982
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 293, 941
AsuC2I CCSGG 3 cut(s) 44, 880, 881
AsuHPI GGTGA 2 cut(s) 430, 743
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 879
AvrII CCTAGG 1 cut(s) 701
AxyI CCTNAGG 1 cut(s) 928
BaeGI GKGCMC 1 cut(s) 936
BanI GGYRCC 1 cut(s) 933
BarI GAAGNNNNNNTAC 4 cut(s) 799, 831, 895, 927
BbvI GCAGC 2 cut(s) 513, 1022
BccI CCATC 1 cut(s) 1009
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 3 cut(s) 44, 880, 881
BcoDI GTCTC 3 cut(s) 598, 831, 1032
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 3 cut(s) 557, 702, 906
BfmI CTRYAG 2 cut(s) 527, 1008
BfoI RGCGCY 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 215
BglII AGATCT 1 cut(s) 576
BisI GCNGC 3 cut(s) 210, 527, 1011
BlnI CCTAGG 1 cut(s) 701
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 3 cut(s) 211, 528, 1012
Bme1390I CCNGG 3 cut(s) 44, 880, 881
BmeRI GACNNNNNGTC 1 cut(s) 676
BmeT110I CYCGRG 1 cut(s) 879
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 293, 941
BmiI GGNNCC 2 cut(s) 867, 935
BmrFI CCNGG 3 cut(s) 44, 880, 881
BmsI GCATC 4 cut(s) 802, 980, 1001, 1022
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 1038
Bpu1102I GCTNAGC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 252
BpuMI CCSGG 3 cut(s) 44, 880, 881
BsaJI CCNNGG 5 cut(s) 240, 701, 879, 937, 1058
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 395, 707, 880
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 904
Bse21I CCTNAGG 1 cut(s) 928
BseDI CCNNGG 5 cut(s) 240, 701, 879, 937, 1058
BseGI GGATG 6 cut(s) 493, 664, 778, 804, 992, 1001
BseLI CCNNNNNNNGG 4 cut(s) 43, 395, 707, 880
BseMII CTCAG 6 cut(s) 101, 214, 381, 456, 705, 942
BseNI ACTGG 1 cut(s) 904
BseRI GAGGAG 4 cut(s) 154, 533, 605, 819
BseSI GKGCMC 1 cut(s) 936
BseXI GCAGC 2 cut(s) 513, 1022
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 3 cut(s) 295, 841, 943
BshNI GGYRCC 1 cut(s) 933
BsiEI CGRYCG 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 879
BsiSI CCGG 6 cut(s) 44, 58, 263, 300, 326, 880
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 4 cut(s) 43, 395, 707, 880
BsmAI GTCTC 3 cut(s) 598, 831, 1032
BsmBI CGTCTC 2 cut(s) 598, 1032
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 3 cut(s) 295, 841, 943
BsoBI CYCGRG 1 cut(s) 879
Bsp119I TTCGAA 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 936
Bsp143I GATC 2 cut(s) 436, 576
Bsp1720I GCTNAGC 1 cut(s) 200
Bsp19I CCATGG 1 cut(s) 1058
BspANI GGCC 3 cut(s) 295, 841, 943
BspCNI CTCAG 6 cut(s) 102, 213, 382, 457, 706, 941
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 867, 935
BspMAI CTGCAG 2 cut(s) 531, 1012
BspT104I TTCGAA 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 933
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 1 cut(s) 904
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 5 cut(s) 240, 701, 879, 937, 1058
BssMI GATC 2 cut(s) 436, 576
BssNAI GTATAC 1 cut(s) 617
BssT1I CCWWGG 4 cut(s) 240, 701, 937, 1058
Bst1107I GTATAC 1 cut(s) 617
Bst4CI ACNGT 4 cut(s) 643, 806, 860, 964
Bst6I CTCTTC 2 cut(s) 494, 596
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 220, 843
BstDEI CTNAG 7 cut(s) 110, 200, 390, 465, 714, 833, 928
BstDSI CCRYGG 1 cut(s) 1058
BstENI CCTNNNNNAGG 2 cut(s) 393, 705
BstF5I GGATG 6 cut(s) 493, 664, 778, 804, 992, 1001
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 2 cut(s) 439, 579
BstMAI GTCTC 3 cut(s) 598, 831, 1032
BstMBI GATC 2 cut(s) 436, 576
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 5 cut(s) 155, 215, 377, 940, 956
BstSCI CCNGG 3 cut(s) 42, 878, 879
BstSFI CTRYAG 2 cut(s) 527, 1008
BstSLI GKGCMC 1 cut(s) 936
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 513, 1022
BstX2I RGATCY 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 1059
BstYI RGATCY 1 cut(s) 576
BstZ17I GTATAC 1 cut(s) 617
Bsu36I CCTNAGG 1 cut(s) 928
BsuRI GGCC 3 cut(s) 295, 841, 943
BtgI CCRYGG 1 cut(s) 1058
BtgZI GCGATG 1 cut(s) 768
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 6 cut(s) 493, 664, 778, 804, 992, 1001
BtsIMutI CAGTG 1 cut(s) 865
Cac8I GCNNGC 2 cut(s) 220, 843
CaiI CAGNNNCTG 2 cut(s) 968, 1016
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 293, 941
Cfr9I CCCGGG 1 cut(s) 879
CseI GACGC 2 cut(s) 28, 1049
Csp6I GTAC 2 cut(s) 560, 903
CspCI CAANNNNNGTGG 2 cut(s) 873, 908
CviAII CATG 4 cut(s) 191, 233, 655, 1059
CviQI GTAC 2 cut(s) 560, 903
DdeI CTNAG 7 cut(s) 110, 200, 390, 465, 714, 833, 928
DpnI GATC 2 cut(s) 438, 578
DpnII GATC 2 cut(s) 436, 576
DriI GACNNNNNGTC 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 494, 596
Eam1105I GACNNNNNGTC 1 cut(s) 676
EarI CTCTTC 2 cut(s) 494, 596
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 4 cut(s) 240, 701, 937, 1058
Eco57I CTGAAG 1 cut(s) 804
Eco81I CCTNAGG 1 cut(s) 928
Eco88I CYCGRG 1 cut(s) 879
EcoNI CCTNNNNNAGG 2 cut(s) 393, 705
EcoO109I RGGNCCY 1 cut(s) 941
EcoT14I CCWWGG 4 cut(s) 240, 701, 937, 1058
EcoT22I ATGCAT 1 cut(s) 795
ErhI CCWWGG 4 cut(s) 240, 701, 937, 1058
Esp3I CGTCTC 2 cut(s) 598, 1032
FaeI CATG 4 cut(s) 194, 236, 658, 1062
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 190, 232, 654, 1058
FauI CCCGC 1 cut(s) 211
FauNDI CATATG 1 cut(s) 789
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 616
Fnu4HI GCNGC 3 cut(s) 210, 527, 1011
FokI GGATG 6 cut(s) 500, 671, 765, 811, 979, 988
Fsp4HI GCNGC 3 cut(s) 210, 527, 1011
FspBI CTAG 3 cut(s) 557, 702, 906
GlaI GCGC 1 cut(s) 223
GluI GCNGC 3 cut(s) 210, 527, 1011
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 1038
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 3 cut(s) 295, 841, 943
HapII CCGG 6 cut(s) 44, 58, 263, 300, 326, 880
HgaI GACGC 2 cut(s) 28, 1049
HhaI GCGC 1 cut(s) 224
Hin1II CATG 4 cut(s) 194, 236, 658, 1062
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 6 cut(s) 229, 353, 407, 538, 671, 824
HpaII CCGG 6 cut(s) 44, 58, 263, 300, 326, 880
HphI GGTGA 2 cut(s) 430, 743
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 8 cut(s) 187, 358, 466, 639, 715, 798, 823, 1037
Hpy188III TCNNGA 3 cut(s) 233, 975, 1017
Hpy8I GTNNAC 1 cut(s) 617
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 7 cut(s) 306, 415, 734, 743, 825, 831, 921
HpyCH4III ACNGT 4 cut(s) 643, 806, 860, 964
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 6 cut(s) 529, 793, 950, 971, 992, 1010
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 215, 377, 940, 956
HpyF3I CTNAG 7 cut(s) 110, 200, 390, 465, 714, 833, 928
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 4 cut(s) 194, 236, 658, 1062
HspAI GCGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 2 cut(s) 436, 576
LmnI GCTCC 3 cut(s) 125, 149, 928
Lsp1109I GCAGC 2 cut(s) 513, 1022
LweI GCATC 4 cut(s) 802, 980, 1001, 1022
MaeI CTAG 3 cut(s) 557, 702, 906
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 661
MalI GATC 2 cut(s) 438, 578
MbiI CCGCTC 1 cut(s) 144
MboI GATC 2 cut(s) 436, 576
MboII GAAGA 7 cut(s) 280, 328, 416, 488, 511, 613, 810
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 936
MlyI GAGTC 2 cut(s) 665, 833
MmeI TCCRAC 2 cut(s) 381, 662
Mph1103I ATGCAT 1 cut(s) 795
MseI TTAA 4 cut(s) 246, 309, 375, 581
MslI CAYNNNNRTG 1 cut(s) 657
MspI CCGG 6 cut(s) 44, 58, 263, 300, 326, 880
MspR9I CCNGG 3 cut(s) 44, 880, 881
MunI CAATTG 1 cut(s) 440
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 155, 215, 377, 940, 956
NciI CCSGG 3 cut(s) 44, 880, 881
NcoI CCATGG 1 cut(s) 1058
NdeI CATATG 1 cut(s) 789
NdeII GATC 2 cut(s) 436, 576
NlaIII CATG 4 cut(s) 194, 236, 658, 1062
NlaIV GGNNCC 2 cut(s) 867, 935
NsiI ATGCAT 1 cut(s) 795
NspV TTCGAA 1 cut(s) 252
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 4 cut(s) 229, 353, 407, 538
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 3 cut(s) 211, 528, 1012
PleI GAGTC 2 cut(s) 665, 832
PpsI GAGTC 2 cut(s) 665, 832
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 867, 935
PspPI GGNCC 2 cut(s) 293, 941
PstI CTGCAG 2 cut(s) 531, 1012
PstNI CAGNNNCTG 2 cut(s) 968, 1016
PsuI RGATCY 1 cut(s) 576
RsaI GTAC 2 cut(s) 561, 904
RsaNI GTAC 2 cut(s) 560, 903
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 4 cut(s) 246, 309, 375, 581
SatI GCNGC 3 cut(s) 210, 527, 1011
Sau3AI GATC 2 cut(s) 436, 576
Sau96I GGNCC 2 cut(s) 293, 941
SchI GAGTC 2 cut(s) 665, 833
ScrFI CCNGG 3 cut(s) 44, 880, 881
SduI GDGCHC 1 cut(s) 936
SfaNI GCATC 4 cut(s) 802, 980, 1001, 1022
SfcI CTRYAG 2 cut(s) 527, 1008
SfuI TTCGAA 1 cut(s) 252
SgrAI CRCCGGYG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 881
SmiMI CAYNNNNRTG 1 cut(s) 657
SpeI ACTAGT 1 cut(s) 905
SspMI CTAG 3 cut(s) 557, 702, 906
StyD4I CCNGG 3 cut(s) 42, 878, 879
StyI CCWWGG 4 cut(s) 240, 701, 937, 1058
TaaI ACNGT 4 cut(s) 643, 806, 860, 964
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 252, 680
TatI WGTACW 1 cut(s) 559
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 4 cut(s) 229, 353, 407, 538
Tru1I TTAA 4 cut(s) 246, 309, 375, 581
Tru9I TTAA 4 cut(s) 246, 309, 375, 581
TscAI CASTG 1 cut(s) 865
TseI GCWGC 2 cut(s) 526, 1010
TspDTI ATGAA 6 cut(s) 221, 249, 504, 698, 767, 815
TspGWI ACGGA 2 cut(s) 345, 622
TspMI CCCGGG 1 cut(s) 879
TspRI CASTG 1 cut(s) 865
XagI CCTNNNNNAGG 2 cut(s) 393, 705
XapI RAATTY 4 cut(s) 81, 248, 952, 982
XmaI CCCGGG 1 cut(s) 879
XmaJI CCTAGG 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 616
XspI CTAG 3 cut(s) 557, 702, 906
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.