Rw7G002610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011101
Physical Location & Seq
Reverse (-)
2152924 .. 2155138
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002610.1

Sequence Viewer

Length: 1065 bp
ATGGTGGCGATTTCGCTTTACAGAGGAAACCTCCACCGCGTCCCGGACGTCCCTCGCCGGTGGCTTATGCCGACCCCCAAAATATCACTCAAAGACTTCAAATCCCTATTGAGCCGTCGCTCCAAAGCCCTCTCTCGCCACCGCTCCGCCACCTCCTCTAACCCTAACCCTAACCCTAATTCGGACCATGACCAGCTCAGCGAAGCCGCAAAGGCGGGCGCTTTGATTCATGAACCCAAGGTTAAATTCGAAGCACCGCCGGAGAAGATTGTTGCCGATTGCGAAGCTGGGCCTTCCGGCGAGGTTAAGGAGGAGAAACGACCGGACGGAGATGATTTTCCGGCGAAAGAGTCCGACTTGGTTCTGGCTCTTAAAGCTGATTTGCCTGAGAAAGGTTGGGAAGATTCGGTGGCGGTGAAGGTTGAGAAAGTTGATCAATTGGAAAAGGAAAACCCTAATTCTGAGGTAAAAGAAGATGTATTAGATGACAAGCAGAAGAGGAAAAGAGAAGTGGAGGAGAAGCTGCAGGTTTTGAATCAAAAGAAGCATAATCTAGTACAAGTGTTGAAGCAGATCTTAAATGCGGAGGAGGAATTGAAGAGACGGAGTAGTATACAAGGAATTGTGGTTCGTCCGACTGTTTCACTTCACGTGGATGTAACAAATGACTCTGGGTCGATGAATAGGCAACTTACTCCTAGGTTAGGCTCTGAGGCAAATATGAGTGGTGATATGGAAGGGGTTGAAGGCGATGAACTTTCAAATCATAACTTTCATCCTCGCCATATGCATCGGATGAGCAGTATGTCGCCTTCTTCAGAGTCTCCTCTTAGAAGGCCGGCCCATGTTCAGCACAGTGCGGTTCCGCACCCCTCCCGTGCAAGTTTGGTGGCAACTGGTACTAGTCCTTCACGCTTTGCTCCCTCAGGGCACCAAGGGCCTCCTGCAAATTTGCCGACAGTATCTGCATCAGGAACAAATTTCGTTGCATCCTCTCCATCCCCTGCAGCATCTGGAGGAACTTCTACTTTCAGAGACGCTCGGTTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

354

Amino Acids

38.81

Weight (kDa)

8.51

Isoelectric Point (pI)

64.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 930
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 613
AccII CGCG 1 cut(s) 39
AcsI RAATTY 3 cut(s) 245, 949, 979
AcuI CTGAAG 1 cut(s) 801
AcvI CACGTG 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 558, 901
AfiI CCNNNNNNNGG 4 cut(s) 43, 181, 392, 704
AgsI TTSAA 6 cut(s) 100, 535, 568, 598, 746, 762
AhdI GACNNNNNGTC 1 cut(s) 673
AhlI ACTAGT 1 cut(s) 902
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AloI GAACNNNNNNTCC 2 cut(s) 612, 644
AluBI AGCT 4 cut(s) 196, 287, 377, 523
AluI AGCT 4 cut(s) 196, 287, 377, 523
Alw26I GTCTC 3 cut(s) 595, 828, 1029
AlwNI CAGNNNCTG 2 cut(s) 965, 1013
AoxI GGCC 4 cut(s) 290, 836, 840, 938
ApeKI GCWGC 2 cut(s) 523, 1007
ApoI RAATTY 3 cut(s) 245, 949, 979
AspA2I CCTAGG 1 cut(s) 698
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 4 cut(s) 184, 290, 841, 938
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 427, 740
AsuII TTCGAA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 184
AvrII CCTAGG 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 925
BaeGI GKGCMC 1 cut(s) 933
BanI GGYRCC 1 cut(s) 930
BarI GAAGNNNNNNTAC 4 cut(s) 796, 828, 892, 924
BbrPI CACGTG 1 cut(s) 652
BbvI GCAGC 2 cut(s) 510, 1019
BccI CCATC 1 cut(s) 1006
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 3 cut(s) 595, 828, 1029
BcuI ACTAGT 1 cut(s) 902
BfaI CTAG 3 cut(s) 554, 699, 903
BfmI CTRYAG 2 cut(s) 524, 1005
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 573
BisI GCNGC 3 cut(s) 207, 524, 1008
BlnI CCTAGG 1 cut(s) 698
BlpI GCTNAGC 1 cut(s) 197
BlsI GCNGC 3 cut(s) 208, 525, 1009
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 184
BmeRI GACNNNNNGTC 1 cut(s) 673
BmgT120I GGNCC 4 cut(s) 184, 290, 841, 938
BmiI GGNNCC 2 cut(s) 864, 932
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 4 cut(s) 799, 977, 998, 1019
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 1035
Bpu1102I GCTNAGC 1 cut(s) 197
Bpu14I TTCGAA 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 652
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 4 cut(s) 237, 698, 934, 1055
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 181, 392, 704
Bse118I RCCGGY 2 cut(s) 57, 838
Bse1I ACTGG 1 cut(s) 901
Bse21I CCTNAGG 1 cut(s) 925
BseDI CCNNGG 4 cut(s) 237, 698, 934, 1055
BseGI GGATG 5 cut(s) 661, 775, 801, 989, 998
BseLI CCNNNNNNNGG 4 cut(s) 43, 181, 392, 704
BseMII CTCAG 5 cut(s) 211, 378, 453, 702, 939
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 5 cut(s) 145, 326, 530, 602, 816
BseSI GKGCMC 1 cut(s) 933
BseXI GCAGC 2 cut(s) 510, 1019
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 4 cut(s) 292, 838, 842, 940
BshNI GGYRCC 1 cut(s) 930
BsiEI CGRYCG 1 cut(s) 323
BsiSI CCGG 7 cut(s) 44, 58, 260, 297, 323, 341, 839
BslFI GGGAC 2 cut(s) 26, 35
BslI CCNNNNNNNGG 4 cut(s) 43, 181, 392, 704
BsmAI GTCTC 3 cut(s) 595, 828, 1029
BsmBI CGTCTC 2 cut(s) 595, 1029
BsmFI GGGAC 2 cut(s) 26, 35
BsnI GGCC 4 cut(s) 292, 838, 842, 940
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 933
Bsp143I GATC 2 cut(s) 433, 573
Bsp1720I GCTNAGC 1 cut(s) 197
Bsp19I CCATGG 1 cut(s) 1055
BspANI GGCC 4 cut(s) 292, 838, 842, 940
BspCNI CTCAG 5 cut(s) 210, 379, 454, 703, 938
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 864, 932
BspMAI CTGCAG 2 cut(s) 528, 1009
BspMI ACCTGC 1 cut(s) 517
BspT104I TTCGAA 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 930
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 2 cut(s) 57, 838
BsrI ACTGG 1 cut(s) 901
BssAI RCCGGY 2 cut(s) 57, 838
BssECI CCNNGG 4 cut(s) 237, 698, 934, 1055
BssMI GATC 2 cut(s) 433, 573
BssNAI GTATAC 1 cut(s) 614
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 4 cut(s) 237, 698, 934, 1055
Bst1107I GTATAC 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 640, 857, 961
Bst6I CTCTTC 2 cut(s) 491, 593
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 217, 840
BstDEI CTNAG 6 cut(s) 197, 387, 462, 711, 830, 925
BstDSI CCRYGG 1 cut(s) 1055
BstENI CCTNNNNNAGG 2 cut(s) 390, 702
BstF5I GGATG 5 cut(s) 661, 775, 801, 989, 998
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 436, 576
BstMAI GTCTC 3 cut(s) 595, 828, 1029
BstMBI GATC 2 cut(s) 433, 573
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 3 cut(s) 212, 374, 937
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 2 cut(s) 524, 1005
BstSLI GKGCMC 1 cut(s) 933
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 510, 1019
BstX2I RGATCY 1 cut(s) 573
BstXI CCANNNNNNTGG 1 cut(s) 1056
BstYI RGATCY 1 cut(s) 573
BstZ17I GTATAC 1 cut(s) 614
Bsu36I CCTNAGG 1 cut(s) 925
BsuRI GGCC 4 cut(s) 292, 838, 842, 940
BtgI CCRYGG 1 cut(s) 1055
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 5 cut(s) 661, 775, 801, 989, 998
BtsIMutI CAGTG 1 cut(s) 862
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 217, 840
CaiI CAGNNNCTG 2 cut(s) 965, 1013
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 2 cut(s) 57, 838
Cfr13I GGNCC 4 cut(s) 184, 290, 841, 938
CseI GACGC 2 cut(s) 28, 1046
Csp6I GTAC 2 cut(s) 557, 900
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 4 cut(s) 188, 230, 845, 1056
CviQI GTAC 2 cut(s) 557, 900
DdeI CTNAG 6 cut(s) 197, 387, 462, 711, 830, 925
DpnI GATC 2 cut(s) 435, 575
DpnII GATC 2 cut(s) 433, 573
DriI GACNNNNNGTC 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 491, 593
Eam1105I GACNNNNNGTC 1 cut(s) 673
EarI CTCTTC 2 cut(s) 491, 593
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 4 cut(s) 237, 698, 934, 1055
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 801
Eco72I CACGTG 1 cut(s) 652
Eco81I CCTNAGG 1 cut(s) 925
EcoNI CCTNNNNNAGG 2 cut(s) 390, 702
EcoO109I RGGNCCY 1 cut(s) 938
EcoT14I CCWWGG 4 cut(s) 237, 698, 934, 1055
EcoT22I ATGCAT 1 cut(s) 792
ErhI CCWWGG 4 cut(s) 237, 698, 934, 1055
Esp3I CGTCTC 2 cut(s) 595, 1029
FaeI CATG 4 cut(s) 191, 233, 848, 1059
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 26, 35
FatI CATG 4 cut(s) 187, 229, 844, 1055
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 1 cut(s) 786
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 207, 524, 1008
FokI GGATG 5 cut(s) 668, 762, 808, 976, 985
FseI GGCCGGCC 1 cut(s) 842
Fsp4HI GCNGC 3 cut(s) 207, 524, 1008
FspBI CTAG 3 cut(s) 554, 699, 903
GlaI GCGC 1 cut(s) 220
GluI GCNGC 3 cut(s) 207, 524, 1008
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 1035
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 4 cut(s) 292, 838, 842, 940
HapII CCGG 7 cut(s) 44, 58, 260, 297, 323, 341, 839
HgaI GACGC 2 cut(s) 28, 1046
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 191, 233, 848, 1059
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 6 cut(s) 226, 350, 404, 535, 668, 821
HpaII CCGG 7 cut(s) 44, 58, 260, 297, 323, 341, 839
HphI GGTGA 2 cut(s) 427, 740
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 8 cut(s) 184, 355, 463, 636, 712, 795, 820, 1034
Hpy188III TCNNGA 3 cut(s) 230, 972, 1014
Hpy8I GTNNAC 1 cut(s) 614
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 7 cut(s) 303, 412, 731, 740, 822, 828, 918
HpyCH4III ACNGT 3 cut(s) 640, 857, 961
HpyCH4IV ACGT 2 cut(s) 48, 651
HpyCH4V TGCA 7 cut(s) 526, 790, 881, 947, 968, 989, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 374, 937
HpyF3I CTNAG 6 cut(s) 197, 387, 462, 711, 830, 925
HpySE526I ACGT 2 cut(s) 48, 651
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 191, 233, 848, 1059
HspAI GCGC 1 cut(s) 219
KroI GCCGGC 1 cut(s) 838
KroNI GCCGGC 1 cut(s) 840
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 433, 573
LmnI GCTCC 3 cut(s) 125, 149, 925
Lsp1109I GCAGC 2 cut(s) 510, 1019
LweI GCATC 4 cut(s) 799, 977, 998, 1019
MaeI CTAG 3 cut(s) 554, 699, 903
MaeII ACGT 2 cut(s) 48, 651
MaeIII GTNAC 1 cut(s) 658
MalI GATC 2 cut(s) 435, 575
MbiI CCGCTC 1 cut(s) 144
MboI GATC 2 cut(s) 433, 573
MboII GAAGA 6 cut(s) 277, 413, 485, 508, 610, 807
MfeI CAATTG 1 cut(s) 437
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 933
MluCI AATT 9 cut(s) 178, 245, 437, 457, 593, 621, 949, 979, 1060
MlyI GAGTC 3 cut(s) 359, 662, 830
MmeI TCCRAC 2 cut(s) 378, 659
Mph1103I ATGCAT 1 cut(s) 792
MroNI GCCGGC 1 cut(s) 838
MseI TTAA 4 cut(s) 243, 306, 372, 578
MslI CAYNNNNRTG 1 cut(s) 654
MspI CCGG 7 cut(s) 44, 58, 260, 297, 323, 341, 839
MspR9I CCNGG 1 cut(s) 44
MunI CAATTG 1 cut(s) 437
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 212, 374, 937
NaeI GCCGGC 1 cut(s) 840
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 1055
NdeI CATATG 1 cut(s) 786
NdeII GATC 2 cut(s) 433, 573
NgoMIV GCCGGC 1 cut(s) 838
NlaIII CATG 4 cut(s) 191, 233, 848, 1059
NlaIV GGNNCC 2 cut(s) 864, 932
NsiI ATGCAT 1 cut(s) 792
NspV TTCGAA 1 cut(s) 249
PagI TCATGA 1 cut(s) 229
PdiI GCCGGC 1 cut(s) 840
PfeI GAWTC 3 cut(s) 226, 404, 535
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 3 cut(s) 208, 525, 1009
PleI GAGTC 3 cut(s) 358, 662, 829
PmaCI CACGTG 1 cut(s) 652
PmlI CACGTG 1 cut(s) 652
PpsI GAGTC 3 cut(s) 358, 662, 829
Ppu21I YACGTR 1 cut(s) 652
PspCI CACGTG 1 cut(s) 652
PspFI CCCAGC 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 864, 932
PspPI GGNCC 4 cut(s) 184, 290, 841, 938
PstI CTGCAG 2 cut(s) 528, 1009
PstNI CAGNNNCTG 2 cut(s) 965, 1013
PsuI RGATCY 1 cut(s) 573
RigI GGCCGGCC 1 cut(s) 842
RsaI GTAC 2 cut(s) 558, 901
RsaNI GTAC 2 cut(s) 557, 900
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 4 cut(s) 243, 306, 372, 578
SatI GCNGC 3 cut(s) 207, 524, 1008
Sau3AI GATC 2 cut(s) 433, 573
Sau96I GGNCC 4 cut(s) 184, 290, 841, 938
SchI GAGTC 3 cut(s) 359, 662, 830
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 933
SfaNI GCATC 4 cut(s) 799, 977, 998, 1019
SfcI CTRYAG 2 cut(s) 524, 1005
SfuI TTCGAA 1 cut(s) 249
SgrAI CRCCGGYG 1 cut(s) 57
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 654
SpeI ACTAGT 1 cut(s) 902
Sse9I AATT 9 cut(s) 178, 245, 437, 457, 593, 621, 949, 979, 1060
SspMI CTAG 3 cut(s) 554, 699, 903
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 4 cut(s) 237, 698, 934, 1055
TaaI ACNGT 3 cut(s) 640, 857, 961
TaiI ACGT 2 cut(s) 51, 654
TaqI TCGA 2 cut(s) 249, 677
TasI AATT 9 cut(s) 178, 245, 437, 457, 593, 621, 949, 979, 1060
TatI WGTACW 1 cut(s) 556
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 3 cut(s) 226, 404, 535
Tru1I TTAA 4 cut(s) 243, 306, 372, 578
Tru9I TTAA 4 cut(s) 243, 306, 372, 578
TscAI CASTG 1 cut(s) 862
TseI GCWGC 2 cut(s) 523, 1007
TspDTI ATGAA 5 cut(s) 218, 246, 695, 764, 768
TspGWI ACGGA 2 cut(s) 342, 619
TspRI CASTG 1 cut(s) 862
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 2 cut(s) 390, 702
XapI RAATTY 3 cut(s) 245, 949, 979
XmaJI CCTAGG 1 cut(s) 698
XmiI GTMKAC 1 cut(s) 613
XspI CTAG 3 cut(s) 554, 699, 903
ZraI GACGTC 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.