Prupe.5G183400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011101
Physical Location & Seq
Reverse (-)
15266584 .. 15268847
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G183400.1

Sequence Viewer

Length: 1089 bp
ATGGTGGCAATTTCGTTGTACAGAGGAAACCTTCACAGAGTCCCAGACGTACCTCGTCGATGGCTTATGCCAACCCCTAAAATATCTCTCAAGGACTTCAAATCCCTTTTAACCCGTCGCTCTATAGCTCTCTCTCGCGTCCGCTCCACCCTCCCCGCCACCTCCTCTAACCCTAACCCTAACCCTTCTTTTGTTTCAGAACAGCTCAATGAAGCACCAAAGATGAACACTTTGACACACCCCAAGATTAAATTCGAAGCACCGGAGAATGTTGTTGCTGATTGCGAAGCTGGGCCTTCTGGGGTCGACAAGGATGAGAAACAATCTGACGGTGCTGATTTTACGGTGAAACCCGTTGATGGGTCCGATGCATCTCCTGCTTTCAAACCCGATTTGCCTGAGAAAGGTTCCGATGCTGTGGATGTCGGTGTAAATTCACCAGCTGTGAAGGTTGAGAAAGTGGATGAAGAGGGAAAACCCAATTCTGAGGCACATAACAAAGAGGATGTGCTAGATGAGAAGCAAAAAAGGAAAAGAGAAGTTGAGGAGAAGCTGCAAGTTTTGAATCAAAGGAAACATACTATAGTACAAGTCTTGAAGCAGATGTTAAATGCGGAGGAGGAATTAAAGAGACGAAGTGGTATGCAAGGAATGGTGGTTCGCCCATCTGTATCACTTCAAGTGGATGTAACAAATGACTCCGGGTCAATGACTAGGCATGCTGCTGCTAGGTTGGGCTCGGAGGCGAATCTTGAGATGGAAGGGTGTGAAGGTGATGAGCATTCGAATCATAACTTTCATTCTCGCCATATCTTCCGGATGAACAGCACATCCCCATCTTCAGAGTCTCCTCTCAGAAGGCCAACTCATATTCAGCACAATGTGGTTTCACACCCCTCTCGGGCAATTTTGGGGGCTACTGGCAGCAGTCCATCGCGCTTTGCTCCTGCAGGGCACCAGGGGAATCCTGCAACTCTTCCCACATTATCTGTATCAGGAACAAACTACATGGCATCCTCTCCATCCCCTGCAGCGTCTGGCGGCACTTCTGCTTTCAGAGATGCTCGGCTGCCAAGTCCGTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

363

Amino Acids

39.4

Weight (kDa)

8.44

Isoelectric Point (pI)

62.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 954
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 306
AccII CGCG 2 cut(s) 138, 937
AccIII TCCGGA 1 cut(s) 816
AciI CCGC 4 cut(s) 142, 156, 614, 1041
AcsI RAATTY 2 cut(s) 251, 433
AcuI CTGAAG 1 cut(s) 825
AdeI CACNNNGTG 1 cut(s) 883
AfaI GTAC 3 cut(s) 20, 51, 588
AfiI CCNNNNNNNGG 4 cut(s) 359, 360, 404, 901
AgsI TTSAA 5 cut(s) 100, 385, 565, 598, 680
AhdI GACNNNNNGTC 1 cut(s) 703
AjnI CCWGG 1 cut(s) 957
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AloI GAACNNNNNNTCC 4 cut(s) 642, 674, 815, 847
AluBI AGCT 5 cut(s) 128, 205, 290, 443, 553
AluI AGCT 5 cut(s) 128, 205, 290, 443, 553
Alw26I GTCTC 2 cut(s) 625, 852
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 900
Aor13HI TCCGGA 1 cut(s) 816
AoxI GGCC 2 cut(s) 293, 860
ApeKI GCWGC 6 cut(s) 553, 722, 725, 924, 1031, 1069
ApoI RAATTY 2 cut(s) 251, 433
AspLEI GCGC 1 cut(s) 939
AspS9I GGNCC 2 cut(s) 293, 363
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 3 cut(s) 358, 429, 785
AsuII TTCGAA 2 cut(s) 255, 785
AvaI CYCGRG 1 cut(s) 900
AvaII GGWCC 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 957
BanI GGYRCC 1 cut(s) 954
BanII GRGCYC 1 cut(s) 740
BbvI GCAGC 6 cut(s) 540, 709, 712, 936, 1043, 1056
BccI CCATC 7 cut(s) 54, 353, 673, 751, 844, 940, 1030
BciT130I CCWGG 1 cut(s) 959
BcnI CCSGG 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 625, 852
BfaI CTAG 3 cut(s) 512, 714, 729
BfmI CTRYAG 4 cut(s) 123, 582, 948, 1029
BisI GCNGC 7 cut(s) 554, 723, 726, 925, 1032, 1042, 1070
BlsI GCNGC 7 cut(s) 555, 724, 727, 926, 1033, 1043, 1071
Bme1390I CCNGG 2 cut(s) 703, 959
Bme18I GGWCC 1 cut(s) 363
BmeRI GACNNNNNGTC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 2 cut(s) 293, 363
BmiI GGNNCC 3 cut(s) 364, 409, 956
BmrFI CCNGG 2 cut(s) 703, 959
BmsI GCATC 5 cut(s) 358, 380, 403, 1022, 1051
Bpu14I TTCGAA 2 cut(s) 255, 785
BpuEI CTTGAG 2 cut(s) 74, 773
BpuMI CCSGG 1 cut(s) 703
BsaJI CCNNGG 2 cut(s) 958, 1079
BsaWI WCCGGW 2 cut(s) 262, 816
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 360, 404, 901
Bse1I ACTGG 1 cut(s) 925
BseAI TCCGGA 1 cut(s) 816
BseBI CCWGG 1 cut(s) 959
BseDI CCNNGG 2 cut(s) 958, 1079
BseGI GGATG 9 cut(s) 319, 427, 469, 511, 691, 825, 830, 1013, 1022
BseLI CCNNNNNNNGG 4 cut(s) 359, 360, 404, 901
BseMII CTCAG 3 cut(s) 390, 477, 868
BseNI ACTGG 1 cut(s) 925
BseRI GAGGAG 4 cut(s) 154, 560, 632, 840
BseSI GKGCMC 1 cut(s) 957
BseXI GCAGC 6 cut(s) 540, 709, 712, 936, 1043, 1056
BseYI CCCAGC 1 cut(s) 290
Bsh1236I CGCG 2 cut(s) 138, 937
BshFI GGCC 2 cut(s) 295, 862
BshNI GGYRCC 1 cut(s) 954
BsiHKCI CYCGRG 1 cut(s) 900
BsiSI CCGG 3 cut(s) 263, 702, 817
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 4 cut(s) 359, 360, 404, 901
BsmAI GTCTC 2 cut(s) 625, 852
BsmBI CGTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 2 cut(s) 295, 862
BsoBI CYCGRG 1 cut(s) 900
Bsp119I TTCGAA 2 cut(s) 255, 785
Bsp1286I GDGCHC 2 cut(s) 740, 957
Bsp13I TCCGGA 1 cut(s) 816
Bsp1407I TGTACA 1 cut(s) 18
BspACI CCGC 4 cut(s) 142, 156, 614, 1041
BspANI GGCC 2 cut(s) 295, 862
BspCNI CTCAG 3 cut(s) 391, 478, 867
BspEI TCCGGA 1 cut(s) 816
BspFNI CGCG 2 cut(s) 138, 937
BspLI GGNNCC 3 cut(s) 364, 409, 956
BspMAI CTGCAG 2 cut(s) 952, 1033
BspT104I TTCGAA 2 cut(s) 255, 785
BspT107I GGYRCC 1 cut(s) 954
BsrBI CCGCTC 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 2 cut(s) 958, 1079
Bst2UI CCWGG 1 cut(s) 959
Bst4CI ACNGT 2 cut(s) 332, 346
Bst6I CTCTTC 2 cut(s) 462, 981
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 18
BstBI TTCGAA 2 cut(s) 255, 785
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 3 cut(s) 399, 486, 854
BstDSI CCRYGG 1 cut(s) 1079
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 9 cut(s) 319, 427, 469, 511, 691, 825, 830, 1013, 1022
BstFNI CGCG 2 cut(s) 138, 937
BstHHI GCGC 1 cut(s) 939
BstMAI GTCTC 2 cut(s) 625, 852
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 959
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 2 cut(s) 701, 957
BstSFI CTRYAG 4 cut(s) 123, 582, 948, 1029
BstSLI GKGCMC 1 cut(s) 957
BstUI CGCG 2 cut(s) 138, 937
BstV1I GCAGC 6 cut(s) 540, 709, 712, 936, 1043, 1056
BstXI CCANNNNNNTGG 1 cut(s) 1080
BsuRI GGCC 2 cut(s) 295, 862
BtgI CCRYGG 1 cut(s) 1079
BtgZI GCGATG 1 cut(s) 918
BtsCI GGATG 9 cut(s) 319, 427, 469, 511, 691, 825, 830, 1013, 1022
Cac8I GCNNGC 1 cut(s) 720
CaiI CAGNNNCTG 1 cut(s) 1037
CfoI GCGC 1 cut(s) 939
Cfr13I GGNCC 2 cut(s) 293, 363
CseI GACGC 2 cut(s) 127, 1023
Csp6I GTAC 3 cut(s) 19, 50, 587
CviAII CATG 2 cut(s) 719, 1009
CviQI GTAC 3 cut(s) 19, 50, 587
DdeI CTNAG 3 cut(s) 399, 486, 854
DraIII CACNNNGTG 1 cut(s) 883
DriI GACNNNNNGTC 1 cut(s) 703
Eam1104I CTCTTC 2 cut(s) 462, 981
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 2 cut(s) 462, 981
Eco24I GRGCYC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 825
Eco88I CYCGRG 1 cut(s) 900
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 957
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 740
Esp3I CGTCTC 1 cut(s) 625
FaeI CATG 2 cut(s) 722, 1012
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 718, 1008
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 7 cut(s) 554, 723, 726, 925, 1032, 1042, 1070
FokI GGATG 9 cut(s) 326, 434, 476, 518, 698, 817, 832, 1000, 1009
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 7 cut(s) 554, 723, 726, 925, 1032, 1042, 1070
FspBI CTAG 3 cut(s) 512, 714, 729
GlaI GCGC 1 cut(s) 938
GluI GCNGC 7 cut(s) 554, 723, 726, 925, 1032, 1042, 1070
GsaI CCCAGC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 295, 862
HapII CCGG 3 cut(s) 263, 702, 817
HgaI GACGC 2 cut(s) 127, 1023
HhaI GCGC 1 cut(s) 939
Hin1II CATG 2 cut(s) 722, 1012
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 7 cut(s) 39, 565, 698, 748, 787, 845, 964
HpaII CCGG 3 cut(s) 263, 702, 817
HphI GGTGA 3 cut(s) 358, 429, 785
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 9 cut(s) 199, 328, 367, 412, 487, 742, 844, 857, 1058
Hpy188III TCNNGA 4 cut(s) 595, 752, 817, 996
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 2 cut(s) 60, 120
HpyAV CCTTC 7 cut(s) 41, 195, 306, 442, 755, 764, 852
HpyCH4III ACNGT 2 cut(s) 332, 346
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 6 cut(s) 371, 556, 646, 950, 971, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 399, 486, 854
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 722, 1012
HspAI GCGC 1 cut(s) 937
Kpn2I TCCGGA 1 cut(s) 816
LmnI GCTCC 2 cut(s) 149, 949
Lsp1109I GCAGC 6 cut(s) 540, 709, 712, 936, 1043, 1056
LweI GCATC 5 cut(s) 358, 380, 403, 1022, 1051
MaeI CTAG 3 cut(s) 512, 714, 729
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 688
MbiI CCGCTC 1 cut(s) 144
MboII GAAGA 4 cut(s) 479, 805, 831, 968
MhlI GDGCHC 2 cut(s) 740, 957
MluCI AATT 7 cut(s) 9, 251, 433, 481, 623, 906, 1084
MlyI GAGTC 3 cut(s) 48, 692, 854
Mph1103I ATGCAT 1 cut(s) 373
MroI TCCGGA 1 cut(s) 816
MseI TTAA 4 cut(s) 110, 249, 608, 626
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 3 cut(s) 263, 702, 817
MspR9I CCNGG 2 cut(s) 703, 959
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 1 cut(s) 959
MvnI CGCG 2 cut(s) 138, 937
MwoI GCNNNNNNNGC 1 cut(s) 377
NciI CCSGG 1 cut(s) 703
NlaIII CATG 2 cut(s) 722, 1012
NlaIV GGNNCC 3 cut(s) 364, 409, 956
NmeAIII GCCGAG 1 cut(s) 1045
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 722
NspV TTCGAA 2 cut(s) 255, 785
PaeI GCATGC 1 cut(s) 722
PctI GAATGC 1 cut(s) 781
PfeI GAWTC 4 cut(s) 565, 748, 787, 964
PkrI GCNGC 7 cut(s) 555, 724, 727, 926, 1033, 1043, 1071
PleI GAGTC 3 cut(s) 47, 692, 853
PpsI GAGTC 3 cut(s) 47, 692, 853
Psp6I CCWGG 1 cut(s) 957
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 957
PspN4I GGNNCC 3 cut(s) 364, 409, 956
PspPI GGNCC 2 cut(s) 293, 363
PstI CTGCAG 2 cut(s) 952, 1033
PstNI CAGNNNCTG 1 cut(s) 1037
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 20, 51, 588
RsaNI GTAC 3 cut(s) 19, 50, 587
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 4 cut(s) 110, 249, 608, 626
SatI GCNGC 7 cut(s) 554, 723, 726, 925, 1032, 1042, 1070
Sau96I GGNCC 2 cut(s) 293, 363
SbfI CCTGCAGG 1 cut(s) 952
SchI GAGTC 3 cut(s) 48, 692, 854
ScrFI CCNGG 2 cut(s) 703, 959
SdaI CCTGCAGG 1 cut(s) 952
SduI GDGCHC 2 cut(s) 740, 957
SfaNI GCATC 5 cut(s) 358, 380, 403, 1022, 1051
SfcI CTRYAG 4 cut(s) 123, 582, 948, 1029
SfuI TTCGAA 2 cut(s) 255, 785
SinI GGWCC 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 89, 752
SmoI CTYRAG 2 cut(s) 89, 752
SphI GCATGC 1 cut(s) 722
Sse8387I CCTGCAGG 1 cut(s) 952
Sse9I AATT 7 cut(s) 9, 251, 433, 481, 623, 906, 1084
SsiI CCGC 4 cut(s) 142, 156, 614, 1041
SspMI CTAG 3 cut(s) 512, 714, 729
StyD4I CCNGG 2 cut(s) 701, 957
TaaI ACNGT 2 cut(s) 332, 346
TaiI ACGT 1 cut(s) 51
TaqI TCGA 4 cut(s) 58, 255, 306, 785
TasI AATT 7 cut(s) 9, 251, 433, 481, 623, 906, 1084
TatI WGTACW 2 cut(s) 18, 586
TauI GCSGC 1 cut(s) 1044
TfiI GAWTC 4 cut(s) 565, 748, 787, 964
Tru1I TTAA 4 cut(s) 110, 249, 608, 626
Tru9I TTAA 4 cut(s) 110, 249, 608, 626
TseI GCWGC 6 cut(s) 553, 722, 725, 924, 1031, 1069
TspDTI ATGAA 5 cut(s) 225, 239, 480, 788, 836
TspGWI ACGGA 1 cut(s) 1068
VpaK11BI GGWCC 1 cut(s) 363
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 2 cut(s) 251, 433
XceI RCATGY 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 512, 714, 729
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.