Rh7DG031800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011101
Physical Location & Seq
Reverse (-)
2340755 .. 2342477
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG031800.1

Sequence Viewer

Length: 1056 bp
ATGGTGGCGATTTCGCTTTACAGAGGAAACCTCCACCGCGTCCCGGACGTCCCTCGCCGGTGGCTTATGCCGACCCCCAAAATTTCACTCAAAGACTTCAAATCCCTATTGAGCCGTCGCTCCAAAGCCCTCTCTCGCCACCGCTCCGCCACCTCCTCTAACCCTAACCCTAATTCTGACCATGACCAGCTCAGCGAAGCCGCAAAGGCGGGCGCTTTGATTCATGAACCCAAGGTTAAATTCGAAGCACCGCCGGAGAAGATTGTTGCCGATTGCGAAGCTGGGCCTTCCGGCGAGGTTAAGGAGGAGAAACGACCGGACGGAGATGATTTTCCGGCGAAAGAGTCCGAGTTGGTTCTGGCTCTTAAAGCTGATTTGCCTGAGAAAGGTTGGGAAGATTCGGTGGCGGTGAAGGTTGAGAAAGTTGATCAATTGGAAAAGGAAAACCCTAATTCTGAGGTAAAAGATGTATTAGATGACAAGCAGAAGAGGAAAAGAGAAGTGGAGGAGAAGCTGCAGGTTTTGAATCAAAAGAAGCATAATCTAGTACTAGTGTTGAAGCAGATCTTAAATGCGGAGGAGGAATTGAAGAGACGGAGTAGTATACAAGGAATTGTGGTTCGTCCGACTGTTTCACTTCACGTGGATGTAACAAATGACTCTGGGTCGATGAATAGGCAACTTACTCCTAGGTTAGGATCTGAGGCAAATATGAGTGGTGATATGGAAGGGGTTGAAGGCGATGAACTTTCAAATCATAACTTTCATCCTCGCCATATGCATCGGATGAGAAGTATGTCGCCTTCTTCAGAGTCTCCTCTTAGAAGGCCGGCCCATGTTCAGCACAGTGCGGTTCCGCACCCCTCCCGGGCAAGTTTGGTGGCAACTGGTACTAGTCCTTCACGCTTTGCTCCCTCAGGGCACCAAGGGCCTCCTGCAAATTTGCCGACAGTATCTGCATCAGGAACAAATTTCGTTGCATCCTCTCCATCCCCTGCAGCATCTGGAGGAACTTCTACTTTCAGAGACGCTCGGTTGCCAAGTCCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G_path_suppress

Protein Analysis

351

Amino Acids

38.53

Weight (kDa)

9.02

Isoelectric Point (pI)

64.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47850
fragaria_vesca FvH4_5g15910 FvH4_5g15910
malus_domestica MD06G1184600.v1.1 MD14G1190500.v1.1
prunus_persica Prupe.5G183400_v2.0.a1
pyrus_communis pycom06g16380 pycom14g15820
rosa_chinensis RchiOBHm_Chr7g0180141
rosa_laevigata RLG00000005289
rosa_multiflora Rmu_ssc0000119.1_g000036
rosa_roxburghii Rroxscaffold_3G00273090
rosa_rugosa Rorug06G0430800
rosa_samantha Rh6BG096200 Rh7AG031300 Rh7BG031300 Rh7BG031400 Rh7CG033200 Rh7DG031800
rosa_wichuraiana Rw7G002610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 921
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 604
AccII CGCG 1 cut(s) 39
AclWI GGATC 1 cut(s) 706
AcsI RAATTY 4 cut(s) 81, 239, 940, 970
AcuI CTGAAG 1 cut(s) 792
AcvI CACGTG 1 cut(s) 643
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 549, 892
AfiI CCNNNNNNNGG 4 cut(s) 43, 386, 695, 868
AgsI TTSAA 6 cut(s) 100, 526, 559, 589, 737, 753
AhdI GACNNNNNGTC 1 cut(s) 664
AhlI ACTAGT 2 cut(s) 550, 893
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AloI GAACNNNNNNTCC 2 cut(s) 603, 635
AluBI AGCT 4 cut(s) 190, 281, 371, 514
AluI AGCT 4 cut(s) 190, 281, 371, 514
Alw26I GTCTC 3 cut(s) 586, 819, 1020
AlwI GGATC 1 cut(s) 706
AlwNI CAGNNNCTG 2 cut(s) 956, 1004
Ama87I CYCGRG 1 cut(s) 867
AoxI GGCC 4 cut(s) 284, 827, 831, 929
ApeKI GCWGC 2 cut(s) 514, 998
ApoI RAATTY 4 cut(s) 81, 239, 940, 970
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 284, 832, 929
AsuC2I CCSGG 3 cut(s) 44, 868, 869
AsuHPI GGTGA 2 cut(s) 421, 731
AsuII TTCGAA 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 867
AvrII CCTAGG 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 924
BanI GGYRCC 1 cut(s) 921
BarI GAAGNNNNNNTAC 4 cut(s) 787, 819, 883, 915
BbrPI CACGTG 1 cut(s) 643
BbvI GCAGC 2 cut(s) 501, 1010
BccI CCATC 1 cut(s) 997
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 3 cut(s) 44, 868, 869
BcoDI GTCTC 3 cut(s) 586, 819, 1020
BcuI ACTAGT 2 cut(s) 550, 893
BfaI CTAG 4 cut(s) 545, 551, 690, 894
BfmI CTRYAG 2 cut(s) 515, 996
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 206
BglII AGATCT 1 cut(s) 564
BisI GCNGC 3 cut(s) 201, 515, 999
BlnI CCTAGG 1 cut(s) 689
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 3 cut(s) 202, 516, 1000
BmcAI AGTACT 1 cut(s) 549
Bme1390I CCNGG 3 cut(s) 44, 868, 869
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 867
BmgT120I GGNCC 3 cut(s) 284, 832, 929
BmiI GGNNCC 2 cut(s) 855, 923
BmrFI CCNGG 3 cut(s) 44, 868, 869
BmsI GCATC 4 cut(s) 790, 968, 989, 1010
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 1026
Bpu1102I GCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 243
BpuMI CCSGG 3 cut(s) 44, 868, 869
BsaAI YACGTR 1 cut(s) 643
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 5 cut(s) 231, 689, 867, 925, 1046
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 386, 695, 868
Bse118I RCCGGY 2 cut(s) 57, 829
Bse1I ACTGG 1 cut(s) 892
Bse21I CCTNAGG 1 cut(s) 916
BseDI CCNNGG 5 cut(s) 231, 689, 867, 925, 1046
BseGI GGATG 5 cut(s) 652, 766, 792, 980, 989
BseLI CCNNNNNNNGG 4 cut(s) 43, 386, 695, 868
BseMII CTCAG 5 cut(s) 205, 372, 447, 693, 930
BseNI ACTGG 1 cut(s) 892
BseRI GAGGAG 5 cut(s) 145, 320, 521, 593, 807
BseSI GKGCMC 1 cut(s) 924
BseXI GCAGC 2 cut(s) 501, 1010
BseYI CCCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 4 cut(s) 286, 829, 833, 931
BshNI GGYRCC 1 cut(s) 921
BsiEI CGRYCG 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 867
BsiSI CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 830, 868
BslFI GGGAC 2 cut(s) 26, 35
BslI CCNNNNNNNGG 4 cut(s) 43, 386, 695, 868
BsmAI GTCTC 3 cut(s) 586, 819, 1020
BsmBI CGTCTC 2 cut(s) 586, 1020
BsmFI GGGAC 2 cut(s) 26, 35
BsnI GGCC 4 cut(s) 286, 829, 833, 931
BsoBI CYCGRG 1 cut(s) 867
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 924
Bsp143I GATC 3 cut(s) 427, 564, 698
Bsp1720I GCTNAGC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 1046
BspANI GGCC 4 cut(s) 286, 829, 833, 931
BspCNI CTCAG 5 cut(s) 204, 373, 448, 694, 929
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 855, 923
BspMAI CTGCAG 2 cut(s) 519, 1000
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 1 cut(s) 706
BspT104I TTCGAA 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 921
BsrBI CCGCTC 1 cut(s) 144
BsrFI RCCGGY 2 cut(s) 57, 829
BsrI ACTGG 1 cut(s) 892
BssAI RCCGGY 2 cut(s) 57, 829
BssECI CCNNGG 5 cut(s) 231, 689, 867, 925, 1046
BssMI GATC 3 cut(s) 427, 564, 698
BssNAI GTATAC 1 cut(s) 605
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 4 cut(s) 231, 689, 925, 1046
Bst1107I GTATAC 1 cut(s) 605
Bst4CI ACNGT 3 cut(s) 631, 848, 952
Bst6I CTCTTC 2 cut(s) 482, 584
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 211, 831
BstDEI CTNAG 6 cut(s) 191, 381, 456, 702, 821, 916
BstDSI CCRYGG 1 cut(s) 1046
BstENI CCTNNNNNAGG 2 cut(s) 384, 693
BstF5I GGATG 5 cut(s) 652, 766, 792, 980, 989
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 3 cut(s) 430, 567, 701
BstMAI GTCTC 3 cut(s) 586, 819, 1020
BstMBI GATC 3 cut(s) 427, 564, 698
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 3 cut(s) 206, 368, 928
BstSCI CCNGG 3 cut(s) 42, 866, 867
BstSFI CTRYAG 2 cut(s) 515, 996
BstSLI GKGCMC 1 cut(s) 924
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 501, 1010
BstX2I RGATCY 2 cut(s) 564, 698
BstXI CCANNNNNNTGG 1 cut(s) 1047
BstYI RGATCY 2 cut(s) 564, 698
BstZ17I GTATAC 1 cut(s) 605
Bsu36I CCTNAGG 1 cut(s) 916
BsuRI GGCC 4 cut(s) 286, 829, 833, 931
BtgI CCRYGG 1 cut(s) 1046
BtgZI GCGATG 1 cut(s) 756
BtsCI GGATG 5 cut(s) 652, 766, 792, 980, 989
BtsIMutI CAGTG 1 cut(s) 853
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 211, 831
CaiI CAGNNNCTG 2 cut(s) 956, 1004
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 2 cut(s) 57, 829
Cfr13I GGNCC 3 cut(s) 284, 832, 929
Cfr9I CCCGGG 1 cut(s) 867
CseI GACGC 2 cut(s) 28, 1037
Csp6I GTAC 2 cut(s) 548, 891
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviAII CATG 4 cut(s) 182, 224, 836, 1047
CviQI GTAC 2 cut(s) 548, 891
DdeI CTNAG 6 cut(s) 191, 381, 456, 702, 821, 916
DpnI GATC 3 cut(s) 429, 566, 700
DpnII GATC 3 cut(s) 427, 564, 698
DriI GACNNNNNGTC 1 cut(s) 664
Eam1104I CTCTTC 2 cut(s) 482, 584
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 2 cut(s) 482, 584
EciI GGCGGA 1 cut(s) 136
Eco130I CCWWGG 4 cut(s) 231, 689, 925, 1046
Eco57I CTGAAG 1 cut(s) 792
Eco72I CACGTG 1 cut(s) 643
Eco81I CCTNAGG 1 cut(s) 916
Eco88I CYCGRG 1 cut(s) 867
EcoNI CCTNNNNNAGG 2 cut(s) 384, 693
EcoO109I RGGNCCY 1 cut(s) 929
EcoT14I CCWWGG 4 cut(s) 231, 689, 925, 1046
EcoT22I ATGCAT 1 cut(s) 783
ErhI CCWWGG 4 cut(s) 231, 689, 925, 1046
Esp3I CGTCTC 2 cut(s) 586, 1020
FaeI CATG 4 cut(s) 185, 227, 839, 1050
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 2 cut(s) 26, 35
FatI CATG 4 cut(s) 181, 223, 835, 1046
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 777
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 201, 515, 999
FokI GGATG 5 cut(s) 659, 753, 799, 967, 976
FseI GGCCGGCC 1 cut(s) 833
Fsp4HI GCNGC 3 cut(s) 201, 515, 999
FspBI CTAG 4 cut(s) 545, 551, 690, 894
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 201, 515, 999
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 1026
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 4 cut(s) 286, 829, 833, 931
HapII CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 830, 868
HgaI GACGC 2 cut(s) 28, 1037
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 185, 227, 839, 1050
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 6 cut(s) 220, 344, 398, 526, 659, 812
HpaII CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 830, 868
HphI GGTGA 2 cut(s) 421, 731
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 8 cut(s) 178, 349, 457, 627, 703, 786, 811, 1025
Hpy188III TCNNGA 3 cut(s) 224, 963, 1005
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 7 cut(s) 297, 406, 722, 731, 813, 819, 909
HpyCH4III ACNGT 3 cut(s) 631, 848, 952
HpyCH4IV ACGT 2 cut(s) 48, 642
HpyCH4V TGCA 6 cut(s) 517, 781, 938, 959, 980, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 368, 928
HpyF3I CTNAG 6 cut(s) 191, 381, 456, 702, 821, 916
HpySE526I ACGT 2 cut(s) 48, 642
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 185, 227, 839, 1050
HspAI GCGC 1 cut(s) 213
KroI GCCGGC 1 cut(s) 829
KroNI GCCGGC 1 cut(s) 831
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 427, 564, 698
LmnI GCTCC 3 cut(s) 125, 149, 916
Lsp1109I GCAGC 2 cut(s) 501, 1010
LweI GCATC 4 cut(s) 790, 968, 989, 1010
MaeI CTAG 4 cut(s) 545, 551, 690, 894
MaeII ACGT 2 cut(s) 48, 642
MaeIII GTNAC 1 cut(s) 649
MalI GATC 3 cut(s) 429, 566, 700
MbiI CCGCTC 1 cut(s) 144
MboI GATC 3 cut(s) 427, 564, 698
MboII GAAGA 5 cut(s) 271, 407, 499, 601, 798
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 2 cut(s) 564, 698
MhlI GDGCHC 1 cut(s) 924
MlyI GAGTC 3 cut(s) 353, 653, 821
MmeI TCCRAC 1 cut(s) 650
Mph1103I ATGCAT 1 cut(s) 783
MroNI GCCGGC 1 cut(s) 829
MseI TTAA 4 cut(s) 237, 300, 366, 569
MslI CAYNNNNRTG 1 cut(s) 645
MspI CCGG 8 cut(s) 44, 58, 254, 291, 317, 335, 830, 868
MspR9I CCNGG 3 cut(s) 44, 868, 869
MunI CAATTG 1 cut(s) 431
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 206, 368, 928
NaeI GCCGGC 1 cut(s) 831
NciI CCSGG 3 cut(s) 44, 868, 869
NcoI CCATGG 1 cut(s) 1046
NdeI CATATG 1 cut(s) 777
NdeII GATC 3 cut(s) 427, 564, 698
NgoMIV GCCGGC 1 cut(s) 829
NlaIII CATG 4 cut(s) 185, 227, 839, 1050
NlaIV GGNNCC 2 cut(s) 855, 923
NsiI ATGCAT 1 cut(s) 783
NspV TTCGAA 1 cut(s) 243
PagI TCATGA 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 831
PfeI GAWTC 3 cut(s) 220, 398, 526
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 3 cut(s) 202, 516, 1000
PleI GAGTC 3 cut(s) 352, 653, 820
PmaCI CACGTG 1 cut(s) 643
PmlI CACGTG 1 cut(s) 643
PpsI GAGTC 3 cut(s) 352, 653, 820
Ppu21I YACGTR 1 cut(s) 643
PspCI CACGTG 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 855, 923
PspPI GGNCC 3 cut(s) 284, 832, 929
PstI CTGCAG 2 cut(s) 519, 1000
PstNI CAGNNNCTG 2 cut(s) 956, 1004
PsuI RGATCY 2 cut(s) 564, 698
RigI GGCCGGCC 1 cut(s) 833
RsaI GTAC 2 cut(s) 549, 892
RsaNI GTAC 2 cut(s) 548, 891
RseI CAYNNNNRTG 1 cut(s) 645
SaqAI TTAA 4 cut(s) 237, 300, 366, 569
SatI GCNGC 3 cut(s) 201, 515, 999
Sau3AI GATC 3 cut(s) 427, 564, 698
Sau96I GGNCC 3 cut(s) 284, 832, 929
ScaI AGTACT 1 cut(s) 549
SchI GAGTC 3 cut(s) 353, 653, 821
ScrFI CCNGG 3 cut(s) 44, 868, 869
SduI GDGCHC 1 cut(s) 924
SfaNI GCATC 4 cut(s) 790, 968, 989, 1010
SfcI CTRYAG 2 cut(s) 515, 996
SfuI TTCGAA 1 cut(s) 243
SgrAI CRCCGGYG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 869
SmiMI CAYNNNNRTG 1 cut(s) 645
SpeI ACTAGT 2 cut(s) 550, 893
SspMI CTAG 4 cut(s) 545, 551, 690, 894
StyD4I CCNGG 3 cut(s) 42, 866, 867
StyI CCWWGG 4 cut(s) 231, 689, 925, 1046
TaaI ACNGT 3 cut(s) 631, 848, 952
TaiI ACGT 2 cut(s) 51, 645
TaqI TCGA 2 cut(s) 243, 668
TatI WGTACW 1 cut(s) 547
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 3 cut(s) 220, 398, 526
Tru1I TTAA 4 cut(s) 237, 300, 366, 569
Tru9I TTAA 4 cut(s) 237, 300, 366, 569
TscAI CASTG 1 cut(s) 853
TseI GCWGC 2 cut(s) 514, 998
TspDTI ATGAA 5 cut(s) 212, 240, 686, 755, 759
TspGWI ACGGA 2 cut(s) 336, 610
TspMI CCCGGG 1 cut(s) 867
TspRI CASTG 1 cut(s) 853
XagI CCTNNNNNAGG 2 cut(s) 384, 693
XapI RAATTY 4 cut(s) 81, 239, 940, 970
XmaI CCCGGG 1 cut(s) 867
XmaJI CCTAGG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 604
XspI CTAG 4 cut(s) 545, 551, 690, 894
ZraI GACGTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.