AT3G48140

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004480
Physical Location & Seq
Forward (+)
17778282 .. 17779601
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48140.1

Sequence Viewer

Length: 267 bp
ATGGCGAGCCGTTGGTTGAGACCTGAGGTGTATCCTTTGTTCGCTGCTACCGGAGTTGCCGTTGGGATCTGTGCGTTTTCCTTGATCAGAAACATCACCGGAAACCCTGAAGTCAGATGCACCAAGGAGAACAGGGCTGCTGGAATTTTGGATAACCATGCAGAGGGAGAGAAGTATAAGGAAAATTTCCTGAGGAAGTTTGTTCGCAACAAGAAACCTGAAATCATGCCTGGACTCAACAAGTTCTTCACTGATCCTACATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

88

Amino Acids

10.02

Weight (kDa)

9.51

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B12D PF06522 5 - 59 1.9e-22 NADH-ubiquinone reductase complex 1 MLRQ subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 74, 248
AcsI RAATTY 2 cut(s) 144, 184
AcuI CTGAAG 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 163
AjnI CCWGG 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 2 cut(s) 74, 248
ApeKI GCWGC 2 cut(s) 44, 137
ApoI RAATTY 2 cut(s) 144, 184
AsuHPI GGTGA 1 cut(s) 88
AxyI CCTNAGG 2 cut(s) 24, 191
BbvI GCAGC 2 cut(s) 31, 124
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 42
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 13
BfuI GTATCC 1 cut(s) 42
BisI GCNGC 2 cut(s) 45, 138
BlsI GCNGC 2 cut(s) 46, 139
Bme1390I CCNGG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 2 cut(s) 50, 98
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse21I CCTNAGG 2 cut(s) 24, 191
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 15, 182
BseXI GCAGC 2 cut(s) 31, 124
BsiSI CCGG 2 cut(s) 51, 99
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 13
Bso31I GGTCTC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 66, 84, 253
BspCNI CTCAG 2 cut(s) 16, 183
BspPI GGATC 2 cut(s) 74, 248
BspTNI GGTCTC 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 66, 84, 253
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 24, 191
BstKTI GATC 3 cut(s) 69, 87, 256
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 3 cut(s) 66, 84, 253
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 31, 124
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
Bsu36I CCTNAGG 2 cut(s) 24, 191
BsuI GTATCC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 7
CviAII CATG 2 cut(s) 158, 226
CviJI RGCY 2 cut(s) 9, 137
CviKI_1 RGCY 2 cut(s) 9, 137
DdeI CTNAG 2 cut(s) 24, 191
DpnI GATC 3 cut(s) 68, 86, 255
DpnII GATC 3 cut(s) 66, 84, 253
Eco130I CCWWGG 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 129
Eco81I CCTNAGG 2 cut(s) 24, 191
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 161, 229
FaiI YATR 4 cut(s) 159, 177, 227, 262
FatI CATG 2 cut(s) 157, 225
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 45, 138
Fsp4HI GCNGC 2 cut(s) 45, 138
GluI GCNGC 2 cut(s) 45, 138
HapII CCGG 2 cut(s) 51, 99
Hin1II CATG 2 cut(s) 161, 229
HinfI GANTC 1 cut(s) 234
HpaII CCGG 2 cut(s) 51, 99
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 89, 116
Hpy188III TCNNGA 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 120, 161
HpyF3I CTNAG 2 cut(s) 24, 191
Hsp92II CATG 2 cut(s) 161, 229
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 3 cut(s) 66, 84, 253
Lsp1109I GCAGC 2 cut(s) 31, 124
LweI GCATC 1 cut(s) 107
MalI GATC 3 cut(s) 68, 86, 255
MboI GATC 3 cut(s) 66, 84, 253
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 144, 184
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 3 cut(s) 19, 157, 186
MspI CCGG 2 cut(s) 51, 99
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
NdeII GATC 3 cut(s) 66, 84, 253
NlaIII CATG 2 cut(s) 161, 229
PkrI GCNGC 2 cut(s) 46, 139
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PsuI RGATCY 1 cut(s) 66
SatI GCNGC 2 cut(s) 45, 138
Sau3AI GATC 3 cut(s) 66, 84, 253
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 231
SetI ASST 3 cut(s) 25, 30, 220
SfaNI GCATC 1 cut(s) 107
Sse9I AATT 2 cut(s) 144, 184
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 123
TasI AATT 2 cut(s) 144, 184
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 44, 137
TspRI CASTG 1 cut(s) 256
XapI RAATTY 2 cut(s) 144, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.