Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004480

Physical Location & Seq

Genomic Coordinates Forward (+)

24826802 .. 24828279

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G234100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTTCCTCCAGATGGTTAAAGCCTGAGGTATACCCACTATTTGCTGCAGTTGGTGCAGCTGTTGGAATATGTGGCATGCAGCTTGTTAGAAACATCTACACCAACCCTGACGTCAGGGTTAACAAGGAGAACAGAGCTGCTGGGGTGCTTGATAACCATGCAGAGGGAGAGAGATATGCAGAACATGGACTGAGGAAATATGTTCGCAACAAAACCCCCCAGATCATGCCTACCATCAACAAATTCTTCTCAGACCCACAGATTCCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B12D

Protein Analysis

92

Amino Acids

10.24

Weight (kDa)

9.25

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48140
fragaria_vesca	FvH4_4g24540 FvH4_4g24540 FvH4_5g16300
malus_domestica	MD06G1182100.v1.1 MD13G1111000.v1.1 MD13G1111400.v1.1 MD14G1188100.v1.1 MD16G1111000.v1.1
prunus_persica	Prupe.1G234100_v2.0.a1 Prupe.5G180300_v2.0.a1
pyrus_communis	pycom06g16110 pycom14g15580
rosa_chinensis	RchiOBHm_Chr4g0431281 RchiOBHm_Chr7g0179831
rosa_multiflora	Rmu_sc0001754.1_g000004 Rmu_sc0002637.1_g000009 Rmu_sc0004156.1_g000011 Rmu_sc0007885.1_g000013
rosa_roxburghii	Rroxscaffold_3G00273430 Rroxscaffold_5G00372830
rosa_rugosa	Rorug04G0250000 Rorug06G0428600
rosa_samantha	Rh4AG305800 Rh4BG313200 Rh4CG329400 Rh4DG309600 Rh7AG028400 Rh7BG027300 Rh7CG029300
rosa_wichuraiana	Rw4G026590 Rw7G002270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	15, 166
AluBI	AGCT	3 cut(s)	62, 85, 140
AluI	AGCT	3 cut(s)	62, 85, 140
ApeKI	GCWGC	4 cut(s)	47, 59, 82, 140
ApoI	RAATTY	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	27
BbvI	GCAGC	4 cut(s)	34, 71, 94, 127
BccI	CCATC	2 cut(s)	9, 245
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	4 cut(s)	48, 60, 83, 141
BlsI	GCNGC	4 cut(s)	49, 61, 84, 142
BsaHI	GRCGYC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 166
Bse21I	CCTNAGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	15, 166
BseMII	CTCAG	3 cut(s)	18, 185, 267
BseXI	GCAGC	4 cut(s)	34, 71, 94, 127
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	15, 166
Bsp143I	GATC	1 cut(s)	225
BspCNI	CTCAG	3 cut(s)	19, 186, 266
BspMAI	CTGCAG	1 cut(s)	52
BssMI	GATC	1 cut(s)	225
BssNAI	GTATAC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	27, 194, 253
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	34, 71, 94, 127
BstZ17I	GTATAC	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	80
CviAII	CATG	4 cut(s)	79, 161, 188, 229
CviJI	RGCY	5 cut(s)	5, 25, 62, 85, 140
CviKI_1	RGCY	5 cut(s)	5, 25, 62, 85, 140
DdeI	CTNAG	3 cut(s)	27, 194, 253
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	82, 164, 191, 232
FaiI	YATR	8 cut(s)	34, 73, 80, 162, 180, 189, 204, 230
FatI	CATG	4 cut(s)	78, 160, 187, 228
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	48, 60, 83, 141
Fsp4HI	GCNGC	4 cut(s)	48, 60, 83, 141
GluI	GCNGC	4 cut(s)	48, 60, 83, 141
GsaI	CCCAGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	82, 164, 191, 232
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	265
HpaI	GTTAAC	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	34, 124
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	12, 269
Hpy8I	GTNNAC	2 cut(s)	34, 124
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	50, 59, 82, 164, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	27, 194, 253
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	82, 164, 191, 232
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	25, 39, 103, 123, 129, 236
Lsp1109I	GCAGC	4 cut(s)	34, 71, 94, 127
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	1 cut(s)	241
MluCI	AATT	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	19, 22, 160, 189
MseI	TTAA	2 cut(s)	20, 123
MspA1I	CMGCKG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	4 cut(s)	82, 164, 191, 232
NspI	RCATGY	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	49, 61, 84, 142
PspFI	CCCAGC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	20, 123
SatI	GCNGC	4 cut(s)	48, 60, 83, 141
Sau3AI	GATC	1 cut(s)	225
SetI	ASST	5 cut(s)	33, 64, 87, 117, 142
SfcI	CTRYAG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	117
TasI	AATT	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	20, 123
Tru9I	TTAA	2 cut(s)	20, 123
TseI	GCWGC	4 cut(s)	47, 59, 82, 140
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	33
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.