FvH4_5g16300

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004480
Physical Location & Seq
Forward (+)
9287982 .. 9289337
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16300.t1

Sequence Viewer

Length: 267 bp
ATGGCTAGCCGGTGGTTGAGGCCTGAGGTTTACCCGCTATTCTTGGCCGTCGGAGCTGCCGTCGGGATCTGTGGGTTCAGTATGGTCCGCCATATGTGTATCAACCCTGAAGTCAGAGTGTCCAAGGTGAACAGGGCTGCTGGAGTACTGGATAATTTTGCTGAGGGAGAAAAGTATCAGGAGCATATGCTGAGGAAATTTGTCCGCAACAGGTCCCCGGAAATCATGCCAGGCATCAACAGCTTCTTCGCTGACCCAGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

89

Amino Acids

9.93

Weight (kDa)

9.51

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B12D PF06522 5 - 59 1.1e-21 NADH-ubiquinone reductase complex 1 MLRQ subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 88, 205
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 147
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 56, 243, 260
AluI AGCT 3 cut(s) 56, 243, 260
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 20, 45
ApeKI GCWGC 2 cut(s) 56, 137
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 85, 213
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 139
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 2 cut(s) 85, 213
AxyI CCTNAGG 1 cut(s) 24
BbvCI CCTCAGC 2 cut(s) 162, 191
BbvI GCAGC 2 cut(s) 43, 124
BceAI ACGGC 2 cut(s) 32, 44
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 218
BfaI CTAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 57, 138
BlsI GCNGC 2 cut(s) 58, 139
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 218, 231
Bme18I GGWCC 2 cut(s) 85, 213
BmgT120I GGNCC 2 cut(s) 85, 213
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 218, 231
BmsI GCATC 1 cut(s) 243
BmtI GCTAGC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 162
Bpu10I CCTNAGC 2 cut(s) 162, 191
BpuMI CCSGG 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 123, 216
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 123, 216
BseMII CTCAG 3 cut(s) 15, 153, 182
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 43, 124
BseYI CCCAGC 1 cut(s) 256
BshFI GGCC 2 cut(s) 22, 47
BsiSI CCGG 2 cut(s) 10, 218
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 2 cut(s) 22, 47
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 3 cut(s) 35, 88, 205
BspANI GGCC 2 cut(s) 22, 47
BspCNI CTCAG 3 cut(s) 16, 154, 183
BspLI GGNNCC 1 cut(s) 215
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 123, 216
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 24, 162, 191
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 53, 240, 257
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 216, 229
BstV1I GCAGC 2 cut(s) 43, 124
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 2 cut(s) 22, 47
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 85, 213
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 226
CviJI RGCY 8 cut(s) 5, 9, 22, 47, 56, 137, 243, 260
CviKI_1 RGCY 8 cut(s) 5, 9, 22, 47, 56, 137, 243, 260
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 3 cut(s) 24, 162, 191
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 85, 213
Eco57I CTGAAG 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 229
FaiI YATR 6 cut(s) 83, 93, 95, 186, 188, 227
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 2 cut(s) 93, 186
Fnu4HI GCNGC 2 cut(s) 57, 138
Fsp4HI GCNGC 2 cut(s) 57, 138
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 57, 138
GsaI CCCAGC 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 2 cut(s) 22, 47
HapII CCGG 2 cut(s) 10, 218
Hin1II CATG 1 cut(s) 229
HpaII CCGG 2 cut(s) 10, 218
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 31, 130
Hpy188I TCNGA 2 cut(s) 53, 116
Hpy188III TCNNGA 2 cut(s) 64, 179
Hpy8I GTNNAC 2 cut(s) 31, 130
Hpy99I CGWCG 2 cut(s) 53, 65
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 240, 257
HpyF3I CTNAG 3 cut(s) 24, 162, 191
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 53, 181
Lsp1109I GCAGC 2 cut(s) 43, 124
LweI GCATC 1 cut(s) 243
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 154, 197
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 4 cut(s) 12, 19, 157, 186
MspI CCGG 2 cut(s) 10, 218
MspR9I CCNGG 2 cut(s) 218, 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 53, 240, 257
NciI CCSGG 1 cut(s) 218
NdeI CATATG 2 cut(s) 93, 186
NdeII GATC 1 cut(s) 66
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 215
PceI AGGCCT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PkrI GCNGC 2 cut(s) 58, 139
PpuMI RGGWCCY 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 2 cut(s) 85, 213
PspPPI RGGWCCY 1 cut(s) 213
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SatI GCNGC 2 cut(s) 57, 138
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 85, 213
ScaI AGTACT 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 218, 231
SetI ASST 6 cut(s) 30, 58, 129, 215, 245, 262
SfaNI GCATC 1 cut(s) 243
SinI GGWCC 2 cut(s) 85, 213
Sse9I AATT 2 cut(s) 154, 197
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 3 cut(s) 35, 88, 205
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 216, 229
StyI CCWWGG 1 cut(s) 123
TasI AATT 2 cut(s) 154, 197
TatI WGTACW 1 cut(s) 145
TseI GCWGC 2 cut(s) 56, 137
VpaK11BI GGWCC 2 cut(s) 85, 213
XapI RAATTY 1 cut(s) 197
XspI CTAG 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.