Rh7AG028400

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004480
Physical Location & Seq
Reverse (-)
1896618 .. 1898176
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG028400.1

Sequence Viewer

Length: 267 bp
ATGGCTTCCCGGTGGTTAAGGCCTGAGGTTTACCCGCTGTTCGCGGCCGTCGGAGCTGCCGTCGGGATCTGCGGGTTCAGTATGGTCCGCCATATGTGCATCAACCCTGAAGTCAGAGTGAGCAAGGAGAACAGGGCTGCCGGAGTACTGGATAATTTCGCTGAGGGAGAAAAGTATCAGGAGCATATGTTGAGGAAATTTGTCCGCAACAAGTCCCCTGAAATCATGCCAGGCATCAACAGCTTCTTCGCAGACCCAGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

88

Amino Acids

9.89

Weight (kDa)

9.14

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B12D PF06522 5 - 59 8.2e-23 NADH-ubiquinone reductase complex 1 MLRQ subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 5 cut(s) 35, 44, 72, 88, 205
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 147
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 56, 243, 260
AluI AGCT 3 cut(s) 56, 243, 260
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 20, 45
ApeKI GCWGC 2 cut(s) 56, 137
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 85
AxyI CCTNAGG 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 43, 124
BceAI ACGGC 2 cut(s) 32, 44
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 10
BisI GCNGC 3 cut(s) 45, 57, 138
BlsI GCNGC 3 cut(s) 46, 58, 139
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 10, 231
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 10, 231
BmsI GCATC 2 cut(s) 108, 243
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 173, 203
Bse1I ACTGG 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 15, 153
BseNI ACTGG 1 cut(s) 153
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 43, 124
BseYI CCCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 22, 47
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 10, 141
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 2 cut(s) 22, 47
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 5 cut(s) 35, 44, 72, 88, 205
BspANI GGCC 2 cut(s) 22, 47
BspCNI CTCAG 2 cut(s) 16, 154
BspFNI CGCG 1 cut(s) 44
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 153
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 24, 162
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 4 cut(s) 53, 96, 240, 257
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 2 cut(s) 8, 229
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 43, 124
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BstZI CGGCCG 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 2 cut(s) 22, 47
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 226
CviJI RGCY 7 cut(s) 5, 22, 47, 56, 137, 243, 260
CviKI_1 RGCY 7 cut(s) 5, 22, 47, 56, 137, 243, 260
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 24, 162
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EciI GGCGGA 1 cut(s) 77
EclXI CGGCCG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 85
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 229
FaiI YATR 6 cut(s) 83, 93, 95, 186, 188, 227
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 225
FauI CCCGC 2 cut(s) 42, 65
FauNDI CATATG 2 cut(s) 93, 186
Fnu4HI GCNGC 3 cut(s) 45, 57, 138
Fsp4HI GCNGC 3 cut(s) 45, 57, 138
GluI GCNGC 3 cut(s) 45, 57, 138
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 2 cut(s) 22, 47
HapII CCGG 2 cut(s) 10, 141
Hin1II CATG 1 cut(s) 229
HpaII CCGG 2 cut(s) 10, 141
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 53, 116
Hpy188III TCNNGA 2 cut(s) 64, 179
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 53, 65
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 96, 240, 257
HpyF3I CTNAG 2 cut(s) 24, 162
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 53, 181
Lsp1109I GCAGC 2 cut(s) 43, 124
LweI GCATC 2 cut(s) 108, 243
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 154, 197
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 3 cut(s) 19, 157, 186
MseI TTAA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 2 cut(s) 10, 141
MspR9I CCNGG 2 cut(s) 10, 231
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 53, 96, 240, 257
NciI CCSGG 1 cut(s) 10
NdeI CATATG 2 cut(s) 93, 186
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 229
PceI AGGCCT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PkrI GCNGC 3 cut(s) 46, 58, 139
Psp6I CCWGG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 229
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 3 cut(s) 45, 57, 138
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 10, 231
SetI ASST 4 cut(s) 30, 58, 245, 262
SfaNI GCATC 2 cut(s) 108, 243
SinI GGWCC 1 cut(s) 85
Sse9I AATT 2 cut(s) 154, 197
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 5 cut(s) 35, 44, 72, 88, 205
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 8, 229
TasI AATT 2 cut(s) 154, 197
TatI WGTACW 1 cut(s) 145
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseI GCWGC 2 cut(s) 56, 137
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.