Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004480

Physical Location & Seq

Genomic Coordinates Reverse (-)

42215860 .. 42219156

Gene Structure 3297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0250000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGATCCGCATGAAACCTGGGAAGCTGAAACCAAAAGTGCTGGTCCGTGATCCGTTAAAGAATTGGGAGGAAAAATGGGTAACGACGGTGGAGAACCCGGAAAAACCAGGACAAATCATATGGGTGAAATACATGGAAGGGCTGTCGGAGGGCGATTTAGATGTACCTCCGTTGAGTGAGAAGTTCAAAGAAACGAGAAAAGCCGCTGATCGGTTCCTTTCAACTCGTGGGACCAAAACCGACCAGTGGATGTGTGGGGTTTGTTATCAGTGGGATGACCACTGGCCTCCAACGTGCCCATACACGGATGATCCTACACGACCACGACCCCACTCCAAAACAGCAAAACTCATACAGTCTAAGATGCAGGCTCAAGGTAGCAATGCAGAAGAACCAAAGGATAATGCTGCAGACTGTTTGGCTCAAGCCTCGAAAAAAAGTGGTAACGTGTATAGCCATTGGCAATGTAGGATTTGTGGTAAGATAGATGACCACTGGCCTCCAATGTGCCCGTACAAGTGTATCTATCCCGAATTTGCTGAATACAGTGATAGCGCGTCTGCTACTGGCAAGAGTACAGTCCAAATGCCTGAAAGCTTTACCAAAGGAGGTGATGTTATGTTTTGTGGGATTTGTGGTGCGAGAGACCACATCCCTAAAATATGCTACTTCAGGCGTTTTGTCAAATTATTCACTGGTACACCTCCACCTGTCAAGACTATTGATGTTCGTCCAAGCTCACCAGAAAGGAAATTCACTTGGTCGACGGACTTCCTTGTTGTGCCAGAGCAGTTTTTACGTACGTACCAATGGGTGAAGCCTAGCGGTGAAGTGGATGAGGAATTCTTTGCTTCCCCGGCGGAGATGGTTGAATATATCATGCAGACAAACAGGAAGAATAAACCAACAGGTCGTATGGATGAAAAACCAGTGGTTATTGGAGGTGCGTTTACTTCTCCACGGCATCCTCTTGAGTACTGTAGGATTTGTTGCAAGTACATTGACCACTCATATTTAACTTGTCCGTACCTGGAATATGTCCCACCTGGTGCACCTGTTGGCCCTGGCTGTCTAGTAGTTTGTAGTCTGTGTGGTTCCGAGAAATGTGACGAATGTCGGGCCCAACGTGTTGCTTCCGTGTCTTGTCTGAAGTGTGGTACTAAGTTTGACCACCTCGCGAGAGATTGCCCACTCAAGAACAGCTGCCCACCTTTCTTCTCCAATCTTGGTCCCATCCCATTTCAAACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B12D

Protein Analysis

417

Amino Acids

47.23

Weight (kDa)

8.4

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48140
fragaria_vesca	FvH4_4g24540 FvH4_4g24540 FvH4_5g16300
malus_domestica	MD06G1182100.v1.1 MD13G1111000.v1.1 MD13G1111400.v1.1 MD14G1188100.v1.1 MD16G1111000.v1.1
prunus_persica	Prupe.1G234100_v2.0.a1 Prupe.5G180300_v2.0.a1
pyrus_communis	pycom06g16110 pycom14g15580
rosa_chinensis	RchiOBHm_Chr4g0431281 RchiOBHm_Chr7g0179831
rosa_multiflora	Rmu_sc0001754.1_g000004 Rmu_sc0002637.1_g000009 Rmu_sc0004156.1_g000011 Rmu_sc0007885.1_g000013
rosa_roxburghii	Rroxscaffold_3G00273430 Rroxscaffold_5G00372830
rosa_rugosa	Rorug04G0250000 Rorug06G0428600
rosa_samantha	Rh4AG305800 Rh4BG313200 Rh4CG329400 Rh4DG309600 Rh7AG028400 Rh7BG027300 Rh7CG029300
rosa_wichuraiana	Rw4G026590 Rw7G002270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	764
AccII	CGCG	2 cut(s)	557, 1178
AciI	CCGC	4 cut(s)	7, 204, 825, 860
AclWI	GGATC	2 cut(s)	44, 305
AcsI	RAATTY	3 cut(s)	533, 752, 842
AcuI	CTGAAG	2 cut(s)	655, 1169
AdeI	CACNNNGTG	1 cut(s)	1049
AfiI	CCNNNNNNNGG	3 cut(s)	210, 246, 304
AflIII	ACRYGT	2 cut(s)	447, 1126
AgsI	TTSAA	4 cut(s)	187, 222, 872, 1244
AjnI	CCWGG	5 cut(s)	16, 106, 1029, 1045, 1063
AluBI	AGCT	4 cut(s)	25, 597, 738, 1203
AluI	AGCT	4 cut(s)	25, 597, 738, 1203
Alw21I	GWGCWC	1 cut(s)	1054
Alw26I	GTCTC	1 cut(s)	639
Alw44I	GTGCAC	1 cut(s)	1050
AlwI	GGATC	2 cut(s)	44, 305
AoxI	GGCC	4 cut(s)	284, 497, 1060, 1119
ApaI	GGGCCC	1 cut(s)	1123
ApaLI	GTGCAC	1 cut(s)	1050
ApeKI	GCWGC	2 cut(s)	407, 1203
ApoI	RAATTY	3 cut(s)	533, 752, 842
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	6 cut(s)	43, 231, 1061, 1119, 1120, 1229
AsuC2I	CCSGG	2 cut(s)	98, 857
AsuHPI	GGTGA	5 cut(s)	136, 623, 732, 826, 839
AvaII	GGWCC	3 cut(s)	43, 231, 1229
BaeGI	GKGCMC	4 cut(s)	299, 512, 1054, 1123
BaeI	ACNNNNGTAYC	4 cut(s)	505, 538, 788, 821
BanII	GRGCYC	1 cut(s)	1123
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	1054
BbvI	GCAGC	2 cut(s)	394, 1190
BccI	CCATC	2 cut(s)	859, 1241
BceAI	ACGGC	1 cut(s)	977
BciT130I	CCWGG	5 cut(s)	18, 108, 1031, 1047, 1065
BcnI	CCSGG	2 cut(s)	98, 857
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	2 cut(s)	822, 1073
BfmI	CTRYAG	2 cut(s)	408, 979
BisI	GCNGC	3 cut(s)	204, 408, 1204
BlsI	GCNGC	3 cut(s)	205, 409, 1205
BmcAI	AGTACT	1 cut(s)	977
Bme1390I	CCNGG	7 cut(s)	18, 98, 108, 857, 1031, 1047, 1065
Bme18I	GGWCC	3 cut(s)	43, 231, 1229
BmgT120I	GGNCC	6 cut(s)	43, 231, 1061, 1119, 1120, 1229
BmiI	GGNNCC	5 cut(s)	215, 232, 1096, 1121, 1231
BmrFI	CCNGG	7 cut(s)	18, 98, 108, 857, 1031, 1047, 1065
BmsI	GCATC	2 cut(s)	354, 973
BoxI	GACNNNNGTC	1 cut(s)	1113
BpuEI	CTTGAG	4 cut(s)	357, 408, 992, 1178
BpuMI	CCSGG	2 cut(s)	98, 857
BsaAI	YACGTR	2 cut(s)	800, 804
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	4 cut(s)	17, 855, 959, 1063
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 246, 304
Bse1I	ACTGG	6 cut(s)	244, 287, 500, 571, 700, 929
Bse3DI	GCAATG	2 cut(s)	388, 470
BseBI	CCWGG	5 cut(s)	18, 108, 1031, 1047, 1065
BseDI	CCNNGG	4 cut(s)	17, 855, 959, 1063
BseGI	GGATG	8 cut(s)	255, 280, 313, 651, 841, 925, 964, 1233
BseLI	CCNNNNNNNGG	3 cut(s)	210, 246, 304
BseMI	GCAATG	2 cut(s)	388, 470
BseNI	ACTGG	6 cut(s)	244, 287, 500, 571, 700, 929
BseSI	GKGCMC	4 cut(s)	299, 512, 1054, 1123
BseXI	GCAGC	2 cut(s)	394, 1190
Bsh1236I	CGCG	2 cut(s)	557, 1178
BshFI	GGCC	4 cut(s)	286, 499, 1062, 1121
BsiHKAI	GWGCWC	1 cut(s)	1054
BsiSI	CCGG	2 cut(s)	98, 857
BsiWI	CGTACG	1 cut(s)	800
BslFI	GGGAC	3 cut(s)	244, 1025, 1215
BslI	CCNNNNNNNGG	3 cut(s)	210, 246, 304
BsmAI	GTCTC	1 cut(s)	639
BsmFI	GGGAC	3 cut(s)	244, 1025, 1215
BsnI	GGCC	4 cut(s)	286, 499, 1062, 1121
Bso31I	GGTCTC	1 cut(s)	639
Bsp120I	GGGCCC	1 cut(s)	1119
Bsp1286I	GDGCHC	4 cut(s)	299, 512, 1054, 1123
Bsp143I	GATC	4 cut(s)	3, 49, 208, 310
Bsp68I	TCGCGA	1 cut(s)	1178
BspACI	CCGC	4 cut(s)	7, 204, 825, 860
BspANI	GGCC	4 cut(s)	286, 499, 1062, 1121
BspFNI	CGCG	2 cut(s)	557, 1178
BspHI	TCATGA	1 cut(s)	1250
BspLI	GGNNCC	5 cut(s)	215, 232, 1096, 1121, 1231
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	2 cut(s)	44, 305
BspTNI	GGTCTC	1 cut(s)	639
BsrDI	GCAATG	2 cut(s)	388, 470
BsrI	ACTGG	6 cut(s)	244, 287, 500, 571, 700, 929
BssECI	CCNNGG	4 cut(s)	17, 855, 959, 1063
BssMI	GATC	4 cut(s)	3, 49, 208, 310
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	5 cut(s)	18, 108, 1031, 1047, 1065
Bst4CI	ACNGT	6 cut(s)	88, 357, 416, 548, 580, 980
BstBAI	YACGTR	2 cut(s)	800, 804
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	360, 1161
BstDSI	CCRYGG	1 cut(s)	959
BstF5I	GGATG	8 cut(s)	255, 280, 313, 651, 841, 925, 964, 1233
BstFNI	CGCG	2 cut(s)	557, 1178
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	4 cut(s)	6, 52, 211, 313
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	4 cut(s)	3, 49, 208, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstNI	CCWGG	5 cut(s)	18, 108, 1031, 1047, 1065
BstPAI	GACNNNNGTC	1 cut(s)	1113
BstSCI	CCNGG	7 cut(s)	16, 96, 106, 855, 1029, 1045, 1063
BstSFI	CTRYAG	2 cut(s)	408, 979
BstSLI	GKGCMC	4 cut(s)	299, 512, 1054, 1123
BstSNI	TACGTA	2 cut(s)	800, 804
BstUI	CGCG	2 cut(s)	557, 1178
BstV1I	GCAGC	2 cut(s)	394, 1190
BsuRI	GGCC	4 cut(s)	286, 499, 1062, 1121
BtgI	CCRYGG	1 cut(s)	959
BtsCI	GGATG	8 cut(s)	255, 280, 313, 651, 841, 925, 964, 1233
BtsIMutI	CAGTG	7 cut(s)	251, 275, 280, 493, 553, 693, 936
BtuMI	TCGCGA	1 cut(s)	1178
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	1250
CfoI	GCGC	1 cut(s)	557
Cfr13I	GGNCC	6 cut(s)	43, 231, 1061, 1119, 1120, 1229
CseI	GACGC	1 cut(s)	546
CsiI	ACCWGGT	1 cut(s)	1045
CviAII	CATG	4 cut(s)	10, 133, 880, 1251
DdeI	CTNAG	2 cut(s)	360, 1161
DpnI	GATC	4 cut(s)	5, 51, 210, 312
DpnII	GATC	4 cut(s)	3, 49, 208, 310
DraIII	CACNNNGTG	1 cut(s)	1049
EciI	GGCGGA	1 cut(s)	875
Eco105I	TACGTA	2 cut(s)	800, 804
Eco24I	GRGCYC	1 cut(s)	1123
Eco31I	GGTCTC	1 cut(s)	639
Eco47I	GGWCC	3 cut(s)	43, 231, 1229
Eco57I	CTGAAG	2 cut(s)	655, 1169
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	5 cut(s)	16, 106, 1029, 1045, 1063
EcoT38I	GRGCYC	1 cut(s)	1123
FaeI	CATG	4 cut(s)	13, 136, 883, 1254
FaqI	GGGAC	3 cut(s)	244, 1025, 1215
FatI	CATG	4 cut(s)	9, 132, 879, 1250
FauNDI	CATATG	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	3 cut(s)	204, 408, 1204
FokI	GGATG	8 cut(s)	262, 287, 320, 638, 848, 932, 951, 1220
FriOI	GRGCYC	1 cut(s)	1123
Fsp4HI	GCNGC	3 cut(s)	204, 408, 1204
FspBI	CTAG	2 cut(s)	822, 1073
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	3 cut(s)	204, 408, 1204
HaeIII	GGCC	4 cut(s)	286, 499, 1062, 1121
HapII	CCGG	2 cut(s)	98, 857
HgaI	GACGC	1 cut(s)	546
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	13, 136, 883, 1254
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HindIII	AAGCTT	1 cut(s)	595
HpaII	CCGG	2 cut(s)	98, 857
HphI	GGTGA	5 cut(s)	136, 623, 732, 826, 839
Hpy166II	GTNNAC	4 cut(s)	701, 765, 951, 1052
Hpy188I	TCNGA	3 cut(s)	148, 1099, 1149
Hpy188III	TCNNGA	6 cut(s)	530, 715, 971, 1177, 1195, 1251
Hpy8I	GTNNAC	4 cut(s)	701, 765, 951, 1052
Hpy99I	CGWCG	2 cut(s)	88, 769
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	6 cut(s)	88, 357, 416, 548, 580, 980
HpyCH4IV	ACGT	5 cut(s)	293, 447, 799, 803, 1126
HpyCH4V	TGCA	6 cut(s)	367, 386, 410, 883, 993, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HpyF3I	CTNAG	2 cut(s)	360, 1161
HpySE526I	ACGT	5 cut(s)	293, 447, 799, 803, 1126
Hsp92II	CATG	4 cut(s)	13, 136, 883, 1254
HspAI	GCGC	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	3, 49, 208, 310
Lsp1109I	GCAGC	2 cut(s)	394, 1190
LweI	GCATC	2 cut(s)	354, 973
MabI	ACCWGGT	1 cut(s)	1045
MaeI	CTAG	2 cut(s)	822, 1073
MaeII	ACGT	5 cut(s)	293, 447, 799, 803, 1126
MaeIII	GTNAC	3 cut(s)	79, 443, 1106
MalI	GATC	4 cut(s)	5, 51, 210, 312
MboI	GATC	4 cut(s)	3, 49, 208, 310
MboII	GAAGA	3 cut(s)	401, 907, 1207
MhlI	GDGCHC	4 cut(s)	299, 512, 1054, 1123
MluCI	AATT	5 cut(s)	61, 533, 686, 752, 842
MmeI	TCCRAC	2 cut(s)	126, 314
MseI	TTAA	2 cut(s)	56, 1016
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	206, 1203
MspI	CCGG	2 cut(s)	98, 857
MspR9I	CCNGG	7 cut(s)	18, 98, 108, 857, 1031, 1047, 1065
MvaI	CCWGG	5 cut(s)	18, 108, 1031, 1047, 1065
MvnI	CGCG	2 cut(s)	557, 1178
MwoI	GCNNNNNNNGC	1 cut(s)	857
NciI	CCSGG	2 cut(s)	98, 857
NdeI	CATATG	1 cut(s)	119
NdeII	GATC	4 cut(s)	3, 49, 208, 310
NlaIII	CATG	4 cut(s)	13, 136, 883, 1254
NlaIV	GGNNCC	5 cut(s)	215, 232, 1096, 1121, 1231
NmuCI	GTSAC	1 cut(s)	1106
NruI	TCGCGA	1 cut(s)	1178
PagI	TCATGA	1 cut(s)	1250
PcsI	WCGNNNNNNNCGW	1 cut(s)	1123
Pfl23II	CGTACG	1 cut(s)	800
PkrI	GCNGC	3 cut(s)	205, 409, 1205
Ppu21I	YACGTR	2 cut(s)	800, 804
PshAI	GACNNNNGTC	1 cut(s)	1113
Psp6I	CCWGG	5 cut(s)	16, 106, 1029, 1045, 1063
PspGI	CCWGG	5 cut(s)	16, 106, 1029, 1045, 1063
PspLI	CGTACG	1 cut(s)	800
PspN4I	GGNNCC	5 cut(s)	215, 232, 1096, 1121, 1231
PspOMI	GGGCCC	1 cut(s)	1119
PspPI	GGNCC	6 cut(s)	43, 231, 1061, 1119, 1120, 1229
PstI	CTGCAG	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	1203
RruI	TCGCGA	1 cut(s)	1178
RseI	CAYNNNNRTG	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	763
SaqAI	TTAA	2 cut(s)	56, 1016
SatI	GCNGC	3 cut(s)	204, 408, 1204
Sau3AI	GATC	4 cut(s)	3, 49, 208, 310
Sau96I	GGNCC	6 cut(s)	43, 231, 1061, 1119, 1120, 1229
ScaI	AGTACT	1 cut(s)	977
ScrFI	CCNGG	7 cut(s)	18, 98, 108, 857, 1031, 1047, 1065
SduI	GDGCHC	4 cut(s)	299, 512, 1054, 1123
SexAI	ACCWGGT	1 cut(s)	1045
SfaNI	GCATC	2 cut(s)	354, 973
SfcI	CTRYAG	2 cut(s)	408, 979
SinI	GGWCC	3 cut(s)	43, 231, 1229
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	4 cut(s)	372, 423, 971, 1193
SmoI	CTYRAG	4 cut(s)	372, 423, 971, 1193
SnaBI	TACGTA	2 cut(s)	800, 804
Sse9I	AATT	5 cut(s)	61, 533, 686, 752, 842
SsiI	CCGC	4 cut(s)	7, 204, 825, 860
SspMI	CTAG	2 cut(s)	822, 1073
StyD4I	CCNGG	7 cut(s)	16, 96, 106, 855, 1029, 1045, 1063
TaaI	ACNGT	6 cut(s)	88, 357, 416, 548, 580, 980
TaiI	ACGT	5 cut(s)	296, 450, 802, 806, 1129
TaqI	TCGA	2 cut(s)	431, 764
TasI	AATT	5 cut(s)	61, 533, 686, 752, 842
TatI	WGTACW	3 cut(s)	575, 975, 996
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	56, 1016
Tru9I	TTAA	2 cut(s)	56, 1016
TscAI	CASTG	7 cut(s)	251, 275, 287, 500, 553, 700, 936
TseFI	GTSAC	1 cut(s)	1106
TseI	GCWGC	2 cut(s)	407, 1203
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	2 cut(s)	26, 936
TspGWI	ACGGA	7 cut(s)	35, 42, 159, 320, 782, 1014, 1126
TspRI	CASTG	7 cut(s)	251, 275, 287, 500, 553, 700, 936
VneI	GTGCAC	1 cut(s)	1050
VpaK11BI	GGWCC	3 cut(s)	43, 231, 1229
XapI	RAATTY	3 cut(s)	533, 752, 842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	764
XspI	CTAG	2 cut(s)	822, 1073
ZrmI	AGTACT	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.