Rh7BG027300

NADH-ubiquinone reductase complex 1 MLRQ subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004480
Physical Location & Seq
Reverse (-)
1914176 .. 1915620
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG027300.1

Sequence Viewer

Length: 267 bp
ATGGCTTCCCGGTGGTTAAGGCCTGAGGTTTACCCGCTATTCCTGGCCGTCGGAGCTGCCGTCGGGATCTGCGGGTTCAGTATGGTCCGCCATATCTGCATCAACCCTGAAGTCAGAGTGAGCAAGGAGAACAGGGCTGCTGGAGTACTGGATAATTTCGCCGAGGGAGAAAAGTACCAGGAGCATATGCTAAGGAAATTTGTCCGCAACAAGTCCCCTGAAATCATGCCAGGCATCAACAGCTTCTTCACAGACCCGGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B12D

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

9.14

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B12D PF06522 5 - 59 1.2e-22 NADH-ubiquinone reductase complex 1 MLRQ subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 35, 72, 88, 205
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 2 cut(s) 147, 176
AjnI CCWGG 3 cut(s) 42, 177, 229
AluBI AGCT 2 cut(s) 56, 243
AluI AGCT 2 cut(s) 56, 243
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 20, 45
ApeKI GCWGC 2 cut(s) 56, 137
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 10, 257
AvaII GGWCC 1 cut(s) 85
AxyI CCTNAGG 1 cut(s) 24
BbvI GCAGC 2 cut(s) 43, 124
BceAI ACGGC 2 cut(s) 32, 44
BciT130I CCWGG 3 cut(s) 44, 179, 231
BcnI CCSGG 2 cut(s) 10, 257
BisI GCNGC 2 cut(s) 57, 138
BlsI GCNGC 2 cut(s) 58, 139
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 5 cut(s) 10, 44, 179, 231, 257
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 5 cut(s) 10, 44, 179, 231, 257
BmsI GCATC 2 cut(s) 108, 243
BpmI CTGGAG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 10, 257
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse1I ACTGG 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 24
BseBI CCWGG 3 cut(s) 44, 179, 231
BseDI CCNNGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 43, 124
BshFI GGCC 2 cut(s) 22, 47
BsiSI CCGG 2 cut(s) 10, 257
BslFI GGGAC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 2 cut(s) 22, 47
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 4 cut(s) 35, 72, 88, 205
BspANI GGCC 2 cut(s) 22, 47
BspCNI CTCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 3 cut(s) 44, 179, 231
BstDEI CTNAG 2 cut(s) 24, 191
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 53, 96, 240
BstNI CCWGG 3 cut(s) 44, 179, 231
BstSCI CCNGG 5 cut(s) 8, 42, 177, 229, 255
BstV1I GCAGC 2 cut(s) 43, 124
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 2 cut(s) 22, 47
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 146, 175
CviAII CATG 1 cut(s) 226
CviJI RGCY 7 cut(s) 5, 22, 47, 56, 137, 243, 260
CviKI_1 RGCY 7 cut(s) 5, 22, 47, 56, 137, 243, 260
CviQI GTAC 2 cut(s) 146, 175
DdeI CTNAG 2 cut(s) 24, 191
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 42, 177, 229
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 83, 93, 186, 188, 227
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 225
FauI CCCGC 2 cut(s) 42, 65
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 57, 138
Fsp4HI GCNGC 2 cut(s) 57, 138
GluI GCNGC 2 cut(s) 57, 138
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 2 cut(s) 22, 47
HapII CCGG 2 cut(s) 10, 257
Hin1II CATG 1 cut(s) 229
HpaII CCGG 2 cut(s) 10, 257
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 53, 116
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 53, 65
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 96, 240
HpyF3I CTNAG 2 cut(s) 24, 191
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 53, 181
Lsp1109I GCAGC 2 cut(s) 43, 124
LweI GCATC 2 cut(s) 108, 243
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 154, 197
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 19, 157
MseI TTAA 1 cut(s) 17
MspI CCGG 2 cut(s) 10, 257
MspR9I CCNGG 5 cut(s) 10, 44, 179, 231, 257
MvaI CCWGG 3 cut(s) 44, 179, 231
MwoI GCNNNNNNNGC 3 cut(s) 53, 96, 240
NciI CCSGG 2 cut(s) 10, 257
NdeI CATATG 1 cut(s) 186
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 187
PceI AGGCCT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PkrI GCNGC 2 cut(s) 58, 139
Psp6I CCWGG 3 cut(s) 42, 177, 229
PspGI CCWGG 3 cut(s) 42, 177, 229
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 2 cut(s) 147, 176
RsaNI GTAC 2 cut(s) 146, 175
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 2 cut(s) 57, 138
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 147
ScrFI CCNGG 5 cut(s) 10, 44, 179, 231, 257
SetI ASST 3 cut(s) 30, 58, 245
SfaNI GCATC 2 cut(s) 108, 243
SinI GGWCC 1 cut(s) 85
Sse9I AATT 2 cut(s) 154, 197
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 4 cut(s) 35, 72, 88, 205
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 5 cut(s) 8, 42, 177, 229, 255
TasI AATT 2 cut(s) 154, 197
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseI GCWGC 2 cut(s) 56, 137
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.