AT3G48390

Programmed cell death protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17920795 .. 17923496
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48390.1

Sequence Viewer

Length: 1902 bp
ATGGCAACGAGGGAGTGGTTTGTGATGAATGCACAACAGACGAAACTGGCTCTAGAGTCTCCTCCTCTGTTTGCTGTCAAGAAAGATGATGATAAAGATCATACTTGTGATACTGGAGAGGAACCTTATGCACTTGTTGGTTCCCCTGTGTTTAACCCTTTGGAAGATTACAAAAGAGAAGTAGTTTCCATCATCGATGAATACTTTAGCTCTGGGGATGTTGAAGTGGCTGCTTCTGACCTTATGGATCTTGGTTTGAGCGAATACCATCCTTATTTTGTCAAGAGGCTTGTTTCCATGGCCATGGACAGGGGCAATAAGGAGAAGGAGAAGGCTTCGGTGTTACTCTCGCGGTTGTACGCTCTTGTTGTTTCACCTGATCAAATCAGGGTTGGGTTTATTAGACTGCTTGAGTCCGTTGGTGATCTTGCTTTGGACATACCTGATGCTGTTAATGTACTTGCTTTGTTTATTGCCCGGGCCATCGTCGATGAAATTCTTCCCCCCGTTTTTCTGGCTAGAGCAAAGAAGACTCTACCGCATTCCTCTCAAGGGTTTCAGGTTATCTTAGTTTCAGAAAATAGCTATCTCTCTGCTCCTCACCACGCAGAGCTAGTGGAGACAAAATGGGGTGGGAGTACTCACATTACGGTAGAAGAAACAAAGAGAAAGATATCTGAATTTTTGAATGAATATGTAGAGAATGGTGACACTCGTGAAGCTTGTAGATGCATCAGGGAGTTAGGTGTCTCGTTTTTCCATCACGAGATCGTGAAGAGTGGTTTGGTTCTAGTGATGGAGTCCCGAACATCCGAGCCGCTGATACTAAAATTGTTGAAAGAAGCTACAGAAGAAGGTCTCATTAGTTCGAGTCAAATGGCGAAAGGGTTCTCCCGAGTAGCAGATAGTCTTGATGATCTTTCTCTTGACATCCCATCTGCTAAAACTCTGTTTGAGTCAATAGTTCCCAAGGCTATAATAGGAGGTTGGCTCGACGAAGATTCGTTTAAAGAACGCTCTGATCAAAATGGGGGCAGCGAAAATCTAAGGCGGTTCAAGAAGGATGCAGAGACCATAATTCAAGAGTATTTCCTTTCTGATGATATCCCCGAGCTAATCCGCAGTCTTGAAGATTTAGGATTACCCGAATATAACCCGGTATTCTTGAAGAAACTCATCACTCTTGCTATGGATAGGAAGAACAAAGAGAAAGAAATGGCTTCTGTTTTTCTCGCTTCTCTTCACATGGAGATGTTCTCAACAGAAGACTTCATAAATGGTTTCATCATGCTCCTCGAATCCGCAGAAGATACAGCATTAGACATCTTAGCAGCATCAGACGAGCTTGCTCTGTTTCTAGCTAGAGCTGTGATCGATGATGTCTTGGCTCCGCTTAATCTCGAAGAGATCTCAAACAGCTTACCGCCAAAATCAACCGGAAGCGAAACCATCCGCTCAGCTCGGTCTCTGATATCCGCTCGACACGCAGGAGAAAGACTCCTGAGAAGCTGGGGTGGGGGAACGGGCTGGGCAGTGGAAGACGCTAAAGACAAGATCTGGAAACTTCTAGAAGAATACGAAGTAGGAGGAGTAATATCAGAGGCTTGTCGATGCATACGCGATCTAGGAATGCCGTTTTTTAACCACGAGGTGGTTAAGAAGGCTTTGGTAATGGCAATGGAGAAGAAGAACGATCGGATGCTTAATCTCTTGCAGGAGTGTTTTGCTGAAGGGATCATTACTACTAACCAAATGACAAAAGGGTTTGGTCGAGTCAAAGATAGTCTTGATGACTTATCTTTGGATATTCCAAATGCAGAAGAGAAATTTAACTCGTATGTTGCGCACGCTGAAGAGAACGGTTGGCTACACCGCGATTTTGGGTGTTCTACAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

633

Amino Acids

70.75

Weight (kDa)

4.83

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 58 - 168 1.2e-30 MA3 domain
MA3 PF02847 222 - 332 6.6e-34 MA3 domain
MA3 PF02847 352 - 462 1.2e-29 MA3 domain
MA3 PF02847 516 - 624 1e-35 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1845
AccB7I CCANNNNNTGG 1 cut(s) 1651
AccBSI CCGCTC 2 cut(s) 1455, 1478
AccII CGCG 3 cut(s) 352, 1620, 1875
AclWI GGATC 2 cut(s) 255, 1742
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 3 cut(s) 495, 680, 1826
AcuI CTGAAG 2 cut(s) 1749, 1872
AdeI CACNNNGTG 1 cut(s) 1651
AfaI GTAC 3 cut(s) 359, 459, 640
AfiI CCNNNNNNNGG 3 cut(s) 309, 552, 1651
AgsI TTSAA 7 cut(s) 224, 688, 838, 1057, 1082, 1130, 1168
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
Alw26I GTCTC 6 cut(s) 63, 614, 754, 863, 1064, 1470
AlwI GGATC 2 cut(s) 255, 1742
Ama87I CYCGRG 3 cut(s) 477, 894, 1109
AoxI GGCC 2 cut(s) 300, 480
ApeKI GCWGC 3 cut(s) 230, 1035, 1331
ApoI RAATTY 3 cut(s) 495, 680, 1826
Asp700I GAANNNNTTC 2 cut(s) 498, 887
AspLEI GCGC 1 cut(s) 1846
AspS9I GGNCC 1 cut(s) 480
AsuC2I CCSGG 3 cut(s) 478, 479, 1157
AsuHPI GGTGA 4 cut(s) 366, 434, 593, 719
AvaI CYCGRG 3 cut(s) 477, 894, 1109
BalI TGGCCA 1 cut(s) 302
BauI CACGAG 3 cut(s) 714, 764, 1646
BbsI GAAGAC 3 cut(s) 536, 1272, 1545
BbvI GCAGC 3 cut(s) 217, 1047, 1343
BccI CCATC 7 cut(s) 197, 276, 491, 768, 790, 943, 1457
BceAI ACGGC 1 cut(s) 1618
BclI TGATCA 2 cut(s) 379, 1021
BcnI CCSGG 3 cut(s) 478, 479, 1157
BcoDI GTCTC 6 cut(s) 63, 614, 754, 863, 1064, 1470
BfaI CTAG 8 cut(s) 53, 519, 614, 791, 1358, 1362, 1568, 1625
BfmI CTRYAG 2 cut(s) 846, 1890
BglII AGATCT 2 cut(s) 1407, 1554
BisI GCNGC 4 cut(s) 231, 818, 1036, 1332
BlpI GCTNAGC 1 cut(s) 1456
BlsI GCNGC 4 cut(s) 232, 819, 1037, 1333
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 478, 479, 1157
BmeT110I CYCGRG 3 cut(s) 477, 894, 1109
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 3 cut(s) 123, 142, 1389
BmrFI CCNGG 3 cut(s) 478, 479, 1157
BmsI GCATC 7 cut(s) 436, 719, 741, 1054, 1343, 1601, 1689
BpiI GAAGAC 3 cut(s) 536, 1272, 1545
BplI GAGNNNNNCTC 6 cut(s) 975, 1007, 1241, 1273, 1482, 1514
BpmI CTGGAG 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 1456
BpuEI CTTGAG 2 cut(s) 431, 534
BpuMI CCSGG 3 cut(s) 478, 479, 1157
Bsa29I ATCGAT 2 cut(s) 195, 1374
BsaBI GATNNNNATC 1 cut(s) 96
BsaI GGTCTC 3 cut(s) 863, 1064, 1470
BsaJI CCNNGG 4 cut(s) 297, 303, 477, 969
BsaWI WCCGGW 1 cut(s) 1436
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 552, 1651
Bse1I ACTGG 2 cut(s) 51, 118
Bse3DI GCAATG 1 cut(s) 1683
Bse8I GATNNNNATC 1 cut(s) 96
BseCI ATCGAT 2 cut(s) 195, 1374
BseDI CCNNGG 4 cut(s) 297, 303, 477, 969
BseGI GGATG 7 cut(s) 223, 268, 809, 930, 1069, 1449, 1704
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 3 cut(s) 309, 552, 1651
BseMI GCAATG 1 cut(s) 1683
BseMII CTCAG 2 cut(s) 1470, 1493
BseNI ACTGG 2 cut(s) 51, 118
BseRI GAGGAG 5 cut(s) 51, 54, 588, 1283, 1602
BseXI GCAGC 3 cut(s) 217, 1047, 1343
BseYI CCCAGC 2 cut(s) 1509, 1527
Bsh1236I CGCG 3 cut(s) 352, 1620, 1875
Bsh1285I CGRYCG 1 cut(s) 1696
BshFI GGCC 2 cut(s) 302, 482
BshVI ATCGAT 2 cut(s) 195, 1374
BsiEI CGRYCG 1 cut(s) 1696
BsiHKCI CYCGRG 3 cut(s) 477, 894, 1109
BsiSI CCGG 3 cut(s) 478, 1157, 1437
BslFI GGGAC 1 cut(s) 787
BslI CCNNNNNNNGG 3 cut(s) 309, 552, 1651
BsmAI GTCTC 6 cut(s) 63, 614, 754, 863, 1064, 1470
BsmFI GGGAC 1 cut(s) 787
BsmI GAATGC 3 cut(s) 34, 541, 1635
BsnI GGCC 2 cut(s) 302, 482
Bso31I GGTCTC 3 cut(s) 863, 1064, 1470
BsoBI CYCGRG 3 cut(s) 477, 894, 1109
Bsp1720I GCTNAGC 1 cut(s) 1456
Bsp19I CCATGG 2 cut(s) 297, 303
BspANI GGCC 2 cut(s) 302, 482
BspCNI CTCAG 2 cut(s) 1469, 1494
BspDI ATCGAT 2 cut(s) 195, 1374
BspFNI CGCG 3 cut(s) 352, 1620, 1875
BspLI GGNNCC 3 cut(s) 123, 142, 1389
BspPI GGATC 2 cut(s) 255, 1742
BspTNI GGTCTC 3 cut(s) 863, 1064, 1470
BsrBI CCGCTC 2 cut(s) 1455, 1478
BsrDI GCAATG 1 cut(s) 1683
BsrI ACTGG 2 cut(s) 51, 118
BssECI CCNNGG 4 cut(s) 297, 303, 477, 969
BssSI CACGAG 3 cut(s) 714, 764, 1646
BssT1I CCWWGG 3 cut(s) 297, 303, 969
Bst2BI CACGAG 3 cut(s) 714, 764, 1646
Bst4CI ACNGT 2 cut(s) 652, 1862
Bst6I CTCTTC 5 cut(s) 770, 1245, 1398, 1815, 1848
BstC8I GCNNGC 2 cut(s) 1347, 1848
BstDEI CTNAG 5 cut(s) 568, 1046, 1327, 1456, 1502
BstDSI CCRYGG 2 cut(s) 297, 303
BstF5I GGATG 7 cut(s) 223, 268, 809, 930, 1069, 1449, 1704
BstFNI CGCG 3 cut(s) 352, 1620, 1875
BstHHI GCGC 1 cut(s) 1846
BstMAI GTCTC 6 cut(s) 63, 614, 754, 863, 1064, 1470
BstMCI CGRYCG 1 cut(s) 1696
BstMWI GCNNNNNNNGC 1 cut(s) 1484
BstSCI CCNGG 3 cut(s) 476, 477, 1155
BstSFI CTRYAG 2 cut(s) 846, 1890
BstUI CGCG 3 cut(s) 352, 1620, 1875
BstV1I GCAGC 3 cut(s) 217, 1047, 1343
BstV2I GAAGAC 3 cut(s) 536, 1272, 1545
BstX2I RGATCY 3 cut(s) 247, 1407, 1554
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 3 cut(s) 247, 1407, 1554
Bsu15I ATCGAT 2 cut(s) 195, 1374
BsuRI GGCC 2 cut(s) 302, 482
BsuTUI ATCGAT 2 cut(s) 195, 1374
BtgI CCRYGG 2 cut(s) 297, 303
BtsCI GGATG 7 cut(s) 223, 268, 809, 930, 1069, 1449, 1704
BtsI GCAGTG 1 cut(s) 1539
BtsIMutI CAGTG 1 cut(s) 1539
Cac8I GCNNGC 2 cut(s) 1347, 1848
CfoI GCGC 1 cut(s) 1846
Cfr13I GGNCC 1 cut(s) 480
Cfr9I CCCGGG 1 cut(s) 477
ClaI ATCGAT 2 cut(s) 195, 1374
CseI GACGC 1 cut(s) 1550
Csp6I GTAC 3 cut(s) 358, 458, 639
CviAII CATG 4 cut(s) 298, 304, 1246, 1288
CviQI GTAC 3 cut(s) 358, 458, 639
DdeI CTNAG 5 cut(s) 568, 1046, 1327, 1456, 1502
DraI TTTAAA 1 cut(s) 1009
DraIII CACNNNGTG 1 cut(s) 1651
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 5 cut(s) 770, 1245, 1398, 1815, 1848
EarI CTCTTC 5 cut(s) 770, 1245, 1398, 1815, 1848
Eco130I CCWWGG 3 cut(s) 297, 303, 969
Eco31I GGTCTC 3 cut(s) 863, 1064, 1470
Eco32I GATATC 3 cut(s) 675, 1105, 1473
Eco57I CTGAAG 2 cut(s) 1749, 1872
Eco88I CYCGRG 3 cut(s) 477, 894, 1109
EcoRV GATATC 3 cut(s) 675, 1105, 1473
EcoT14I CCWWGG 3 cut(s) 297, 303, 969
EcoT22I ATGCAT 2 cut(s) 734, 1616
ErhI CCWWGG 3 cut(s) 297, 303, 969
FaeI CATG 4 cut(s) 301, 307, 1249, 1291
FalI AAGNNNNNCTT 2 cut(s) 1770, 1802
FaqI GGGAC 1 cut(s) 787
FatI CATG 4 cut(s) 297, 303, 1245, 1287
FbaI TGATCA 2 cut(s) 379, 1021
Fnu4HI GCNGC 4 cut(s) 231, 818, 1036, 1332
FokI GGATG 7 cut(s) 230, 255, 796, 917, 1076, 1436, 1711
Fsp4HI GCNGC 4 cut(s) 231, 818, 1036, 1332
FspBI CTAG 8 cut(s) 53, 519, 614, 791, 1358, 1362, 1568, 1625
FspI TGCGCA 1 cut(s) 1845
GlaI GCGC 1 cut(s) 1845
GluI GCNGC 4 cut(s) 231, 818, 1036, 1332
GsaI CCCAGC 2 cut(s) 1513, 1531
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 2 cut(s) 302, 482
HapII CCGG 3 cut(s) 478, 1157, 1437
HgaI GACGC 1 cut(s) 1550
HhaI GCGC 1 cut(s) 1846
Hin1II CATG 4 cut(s) 301, 307, 1249, 1291
Hin6I GCGC 1 cut(s) 1844
HinP1I GCGC 1 cut(s) 1844
HindIII AAGCTT 1 cut(s) 720
HpaII CCGG 3 cut(s) 478, 1157, 1437
HphI GGTGA 4 cut(s) 366, 434, 593, 719
Hpy99I CGWCG 2 cut(s) 491, 998
HpyAV CCTTC 6 cut(s) 319, 325, 848, 1054, 1654, 1724
HpyCH4III ACNGT 2 cut(s) 652, 1862
HpyCH4V TGCA 7 cut(s) 32, 131, 732, 1067, 1614, 1714, 1817
HpyF10VI GCNNNNNNNGC 1 cut(s) 1484
HpyF3I CTNAG 5 cut(s) 568, 1046, 1327, 1456, 1502
Hsp92II CATG 4 cut(s) 301, 307, 1249, 1291
HspAI GCGC 1 cut(s) 1844
Ksp22I TGATCA 2 cut(s) 379, 1021
LmnI GCTCC 3 cut(s) 601, 1296, 1393
Lsp1109I GCAGC 3 cut(s) 217, 1047, 1343
LweI GCATC 7 cut(s) 436, 719, 741, 1054, 1343, 1601, 1689
MaeI CTAG 8 cut(s) 53, 519, 614, 791, 1358, 1362, 1568, 1625
MaeIII GTNAC 2 cut(s) 342, 707
MbiI CCGCTC 2 cut(s) 1455, 1478
MflI RGATCY 3 cut(s) 247, 1407, 1554
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 5 cut(s) 495, 680, 830, 1077, 1826
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 8 cut(s) 65, 422, 526, 809, 880, 965, 1491, 1782
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 2 cut(s) 734, 1616
MroXI GAANNNNTTC 2 cut(s) 498, 887
MscI TGGCCA 1 cut(s) 302
MseI TTAA 8 cut(s) 153, 453, 1008, 1395, 1641, 1656, 1704, 1830
MslI CAYNNNNRTG 3 cut(s) 105, 302, 1250
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 820
MspI CCGG 3 cut(s) 478, 1157, 1437
MspR9I CCNGG 3 cut(s) 478, 479, 1157
Mva1269I GAATGC 3 cut(s) 34, 541, 1635
MvnI CGCG 3 cut(s) 352, 1620, 1875
MwoI GCNNNNNNNGC 1 cut(s) 1484
NciI CCSGG 3 cut(s) 478, 479, 1157
NcoI CCATGG 2 cut(s) 297, 303
NlaIII CATG 4 cut(s) 301, 307, 1249, 1291
NlaIV GGNNCC 3 cut(s) 123, 142, 1389
NmuCI GTSAC 1 cut(s) 707
NsbI TGCGCA 1 cut(s) 1845
NsiI ATGCAT 2 cut(s) 734, 1616
PctI GAATGC 3 cut(s) 34, 541, 1635
PdmI GAANNNNTTC 2 cut(s) 498, 887
PfeI GAWTC 3 cut(s) 1001, 1298, 1895
PflMI CCANNNNNTGG 1 cut(s) 1651
PkrI GCNGC 4 cut(s) 232, 819, 1037, 1333
Ple19I CGATCG 1 cut(s) 1696
PleI GAGTC 8 cut(s) 64, 421, 526, 808, 879, 964, 1491, 1781
PpsI GAGTC 8 cut(s) 64, 421, 526, 808, 879, 964, 1491, 1781
PspFI CCCAGC 2 cut(s) 1509, 1527
PspN4I GGNNCC 3 cut(s) 123, 142, 1389
PspPI GGNCC 1 cut(s) 480
PsuI RGATCY 3 cut(s) 247, 1407, 1554
PvuI CGATCG 1 cut(s) 1696
RsaI GTAC 3 cut(s) 359, 459, 640
RsaNI GTAC 3 cut(s) 358, 458, 639
RseI CAYNNNNRTG 3 cut(s) 105, 302, 1250
SaqAI TTAA 8 cut(s) 153, 453, 1008, 1395, 1641, 1656, 1704, 1830
SatI GCNGC 4 cut(s) 231, 818, 1036, 1332
Sau96I GGNCC 1 cut(s) 480
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 8 cut(s) 65, 422, 526, 809, 880, 965, 1491, 1782
ScrFI CCNGG 3 cut(s) 478, 479, 1157
SfaNI GCATC 7 cut(s) 436, 719, 741, 1054, 1343, 1601, 1689
SfcI CTRYAG 2 cut(s) 846, 1890
SmaI CCCGGG 1 cut(s) 479
SmiMI CAYNNNNRTG 3 cut(s) 105, 302, 1250
SmlI CTYRAG 2 cut(s) 410, 549
SmoI CTYRAG 2 cut(s) 410, 549
SrfI GCCCGGGC 1 cut(s) 479
Sse9I AATT 5 cut(s) 495, 680, 830, 1077, 1826
SspMI CTAG 8 cut(s) 53, 519, 614, 791, 1358, 1362, 1568, 1625
StyD4I CCNGG 3 cut(s) 476, 477, 1155
StyI CCWWGG 3 cut(s) 297, 303, 969
TaaI ACNGT 2 cut(s) 652, 1862
TaqII GACCGA 1 cut(s) 1452
TasI AATT 5 cut(s) 495, 680, 830, 1077, 1826
TatI WGTACW 2 cut(s) 457, 638
TauI GCSGC 1 cut(s) 820
TfiI GAWTC 3 cut(s) 1001, 1298, 1895
Tru1I TTAA 8 cut(s) 153, 453, 1008, 1395, 1641, 1656, 1704, 1830
Tru9I TTAA 8 cut(s) 153, 453, 1008, 1395, 1641, 1656, 1704, 1830
TscAI CASTG 1 cut(s) 1539
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 3 cut(s) 230, 1035, 1331
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 6 cut(s) 41, 213, 507, 705, 1261, 1273
TspGWI ACGGA 1 cut(s) 406
TspMI CCCGGG 1 cut(s) 477
TspRI CASTG 1 cut(s) 1539
Van91I CCANNNNNTGG 1 cut(s) 1651
XapI RAATTY 3 cut(s) 495, 680, 1826
XbaI TCTAGA 2 cut(s) 52, 1567
XmaI CCCGGG 1 cut(s) 477
XmnI GAANNNNTTC 2 cut(s) 498, 887
XspI CTAG 8 cut(s) 53, 519, 614, 791, 1358, 1362, 1568, 1625
ZrmI AGTACT 1 cut(s) 640
Zsp2I ATGCAT 2 cut(s) 734, 1616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.