Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000157

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Reverse (-)

119929 .. 120769

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_157G00438450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTGGAAATTGGAGACACTCTTGAGGCCTGTAGACAGCCTCGATGACCTTGCTCTTGACATTCCATCAGCAAAAACCTTGTTCCAGTCACTGGTCCCCAAGGCAATATTTGAAGGTTGGCTTGATGATTCATTTGTGGAATCCTTAAGTGCAGATGGTGAGGTGCAAGTTGGAGATGAAAAGATCTTCTCGGCCGAGGACAAAGTTAATGGATTTGTCTTGCTTCTGGAATCTGCAGAGGATACAGAGTTGGACAACTTGGATGCTTCAAATGAGCTTGCTCTCTTTTTAGCCAGGGCCGTGATCGATGATGTGTTGTGTCCACTGAATTTGGAAGAAATTGGCAGTAGGTTGCGACCAAACTGCAGCGCAACTGAGACTGTGCGAATGGCTCAGTCACTGGTTTCTGCTCGTCATGCTGGTGAGAGGCTCCTGGGAGGTTCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

149

Amino Acids

16.27

Weight (kDa)

4.26

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	113, 270
AjnI	CCWGG	2 cut(s)	293, 432
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	8, 371
AlwNI	CAGNNNCTG	2 cut(s)	91, 400
AoxI	GGCC	3 cut(s)	26, 192, 297
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	94, 297
AsuHPI	GGTGA	2 cut(s)	170, 434
AvaII	GGWCC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	2 cut(s)	73, 149
BceAI	ACGGC	1 cut(s)	284
BcgI	CGANNNNNNTGC	4 cut(s)	32, 66, 345, 379
BciT130I	CCWGG	2 cut(s)	295, 434
BciVI	GTATCC	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	8, 371
BfmI	CTRYAG	3 cut(s)	30, 234, 364
BfrI	CTTAAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	1 cut(s)	367
BlsI	GCNGC	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	295, 434
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	94, 297
BmiI	GGNNCC	3 cut(s)	96, 431, 442
BmrFI	CCNGG	2 cut(s)	295, 434
BmsI	GCATC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	99, 195, 294, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	3 cut(s)	85, 96, 405
BseBI	CCWGG	2 cut(s)	295, 434
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	4 cut(s)	99, 195, 294, 433
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	366, 407
BseNI	ACTGG	3 cut(s)	85, 96, 405
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	28, 194, 299
BshVI	ATCGAT	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	8, 371
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	3 cut(s)	28, 194, 299
Bsp143I	GATC	2 cut(s)	183, 303
BspANI	GGCC	3 cut(s)	28, 194, 299
BspCNI	CTCAG	2 cut(s)	367, 406
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	96, 431, 442
BspMAI	CTGCAG	2 cut(s)	238, 368
BspTI	CTTAAG	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	85, 96, 405
BssECI	CCNNGG	4 cut(s)	99, 195, 294, 433
BssMI	GATC	2 cut(s)	183, 303
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	295, 434
Bst4CI	ACNGT	1 cut(s)	382
BstAFI	CTTAAG	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	375, 393
BstF5I	GGATG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	2 cut(s)	186, 306
BstMAI	GTCTC	2 cut(s)	8, 371
BstMBI	GATC	2 cut(s)	183, 303
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	295, 434
BstSCI	CCNGG	2 cut(s)	293, 432
BstSFI	CTRYAG	3 cut(s)	30, 234, 364
BstV1I	GCAGC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BstZI	CGGCCG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	28, 194, 299
BsuTUI	ATCGAT	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	4 cut(s)	89, 323, 398, 445
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	2 cut(s)	91, 400
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	94, 297
ClaI	ATCGAT	1 cut(s)	306
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	9 cut(s)	28, 39, 121, 194, 277, 293, 299, 392, 430
CviKI_1	RGCY	9 cut(s)	28, 39, 121, 194, 277, 293, 299, 392, 430
DdeI	CTNAG	2 cut(s)	375, 393
DpnI	GATC	2 cut(s)	185, 305
DpnII	GATC	2 cut(s)	183, 303
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	99
Eco147I	AGGCCT	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	293, 432
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	419
FaiI	YATR	1 cut(s)	417
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	367
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	367
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	367
HaeIII	GGCC	3 cut(s)	28, 194, 299
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	3 cut(s)	128, 140, 230
HphI	GGTGA	2 cut(s)	170, 434
Hpy166II	GTNNAC	2 cut(s)	34, 323
Hpy188III	TCNNGA	3 cut(s)	22, 56, 227
Hpy8I	GTNNAC	2 cut(s)	34, 323
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	152, 166, 236, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	2 cut(s)	375, 393
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	183, 303
LmnI	GCTCC	1 cut(s)	435
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	87, 396
MalI	GATC	2 cut(s)	185, 305
MboI	GATC	2 cut(s)	183, 303
MboII	GAAGA	2 cut(s)	178, 347
MflI	RGATCY	1 cut(s)	183
MluCI	AATT	3 cut(s)	8, 328, 339
MmeI	TCCRAC	2 cut(s)	151, 231
MnlI	CCTC	7 cut(s)	18, 50, 154, 190, 232, 420, 431
MseI	TTAA	2 cut(s)	146, 207
MslI	CAYNNNNRTG	1 cut(s)	420
MspCI	CTTAAG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	295, 434
MvaI	CCWGG	2 cut(s)	295, 434
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	183, 303
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	3 cut(s)	96, 431, 442
NmeAIII	GCCGAG	2 cut(s)	170, 220
NmuCI	GTSAC	2 cut(s)	87, 396
PceI	AGGCCT	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	128, 140, 230
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	293, 432
PspGI	CCWGG	2 cut(s)	293, 432
PspN4I	GGNNCC	3 cut(s)	96, 431, 442
PspPI	GGNCC	2 cut(s)	94, 297
PstI	CTGCAG	2 cut(s)	238, 368
PstNI	CAGNNNCTG	2 cut(s)	91, 400
PsuI	RGATCY	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	146, 207
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	2 cut(s)	183, 303
Sau96I	GGNCC	2 cut(s)	94, 297
ScrFI	CCNGG	2 cut(s)	295, 434
SetI	ASST	7 cut(s)	51, 80, 118, 165, 279, 353, 442
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	3 cut(s)	30, 234, 364
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	22, 145
SmoI	CTYRAG	2 cut(s)	22, 145
Sse9I	AATT	3 cut(s)	8, 328, 339
SseBI	AGGCCT	1 cut(s)	28
SspI	AATATT	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	293, 432
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	42, 306
TasI	AATT	3 cut(s)	8, 328, 339
TfiI	GAWTC	3 cut(s)	128, 140, 230
Tru1I	TTAA	2 cut(s)	146, 207
Tru9I	TTAA	2 cut(s)	146, 207
TscAI	CASTG	3 cut(s)	96, 330, 405
TseFI	GTSAC	2 cut(s)	87, 396
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	2 cut(s)	87, 396
TspDTI	ATGAA	2 cut(s)	120, 192
TspRI	CASTG	3 cut(s)	96, 330, 405
Van91I	CCANNNNNTGG	1 cut(s)	91
Vha464I	CTTAAG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.