Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010599.1

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Reverse (-)

31285 .. 32418

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010599.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggagactcggacaactgaaccactaataacgaagctattaaaggaggcagctgaggaaggcattattagttccagtcagatggcaaagggcttttctcgtttggcagagagccttgatgacctttctcttgacattccatcagcaaaaaccttgttccagtcactggtccccaaggcaatatctgaaggttggcttgatgattcatttgtggaatccttaggtgaggacggtgaggtgcaagatggagatgaaaaggtgaggcagtacaagaaagagattgtgtccataattcacgaatactttctctcggatgatattcccgagctcattcaaagccttgaagatcttgcggtacctgagtataatcccatattcttgaagaagctgatcacacttgcaatggatagaaagaaccgtgaaaaggaaatggcatctgttctgctttctgcccttcatattgagatcttctcgactgaggacatagttaatggatttgtcttgcttctggaatctgcagaggacacggcattggacatcttggatgcttcaaatgagcttgctctctttctggccagggctgtgatcgatgatgtgttggctccgctgaatttggaagaaattggcagcaggttgccaccgaattgcagcgcaactgagactgtgcgaatggctcagtcactggtttctgctcgtcatgctggtgagaggctcctgagatgttggggaggtgggactggctggattgtggaggatgcaaaggacaagatcacaaagctcttagaggagtacgaaagtggggactgtgggggtgtcgtggctgcagcctgccagtgcattcgtgatatcggaatgcctttctttaaccatgaggtggtgaagaaggcgctggttatggcaatggagaagaagaatgacagtatgctggatctgcttcaggagtgcttcagtgaaggactcatcacaatcaaccagctgaccaaaggcttcacccggatcaaggaagggctagatgacttggctctcgacattccaaatgcaagggagaagttcagcttctacgtggagcacgcacaggagaagggttggcttttgccgacctttggttcatctgccgcggatggttctcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

377

Amino Acids

41.68

Weight (kDa)

4.55

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	621
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	355
AccB7I	CCANNNNNTGG	2 cut(s)	166, 874
AccII	CGCG	1 cut(s)	1118
AciI	CCGC	4 cut(s)	353, 605, 1116, 1118
AclWI	GGATC	2 cut(s)	936, 1004
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	3 cut(s)	207, 920, 931
AfaI	GTAC	3 cut(s)	269, 357, 791
AfiI	CCNNNNNNNGG	5 cut(s)	166, 424, 874, 1000, 1103
AgsI	TTSAA	4 cut(s)	335, 344, 382, 552
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	8 cut(s)	37, 53, 328, 388, 559, 778, 976, 1056
AluI	AGCT	8 cut(s)	37, 53, 328, 388, 559, 778, 976, 1056
Alw21I	GWGCWC	2 cut(s)	330, 1071
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	2 cut(s)	936, 1004
AlwNI	CAGNNNCTG	2 cut(s)	166, 682
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	5 cut(s)	50, 627, 648, 821, 824
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	303
Asp718I	GGTACC	1 cut(s)	355
AspLEI	GCGC	2 cut(s)	653, 889
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	994
AsuHPI	GGTGA	6 cut(s)	236, 245, 271, 716, 889, 982
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BalI	TGGCCA	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	330, 1071
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	62, 639, 660, 808, 836
BccI	CCATC	4 cut(s)	76, 148, 239, 1115
BceAI	ACGGC	1 cut(s)	543
BciT130I	CCWGG	1 cut(s)	577
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	994
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	1010
BfmI	CTRYAG	2 cut(s)	516, 822
BfoI	RGCGCY	1 cut(s)	890
BfuAI	ACCTGC	1 cut(s)	621
BglII	AGATCT	2 cut(s)	346, 465
BisI	GCNGC	6 cut(s)	51, 628, 649, 822, 825, 1116
BlsI	GCNGC	6 cut(s)	52, 629, 650, 823, 826, 1117
Bme1390I	CCNGG	2 cut(s)	577, 994
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	4 cut(s)	171, 357, 603, 713
BmrFI	CCNGG	2 cut(s)	577, 994
BmsI	GCATC	3 cut(s)	443, 535, 745
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	994
Bsa29I	ATCGAT	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	1063
BsaJI	CCNNGG	3 cut(s)	174, 576, 1116
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 424, 874, 1000, 1103
Bse1I	ACTGG	6 cut(s)	75, 160, 171, 687, 742, 832
Bse21I	CCTNAGG	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	408, 906
BseBI	CCWGG	1 cut(s)	577
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	3 cut(s)	174, 576, 1116
BseGI	GGATG	4 cut(s)	319, 550, 760, 1126
BseLI	CCNNNNNNNGG	5 cut(s)	166, 424, 874, 1000, 1103
BseMI	GCAATG	2 cut(s)	408, 906
BseMII	CTCAG	6 cut(s)	45, 351, 468, 648, 689, 707
BseNI	ACTGG	6 cut(s)	75, 160, 171, 687, 742, 832
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	5 cut(s)	62, 639, 660, 808, 836
Bsh1236I	CGCG	1 cut(s)	1118
BshFI	GGCC	1 cut(s)	575
BshNI	GGYRCC	1 cut(s)	355
BshVI	ATCGAT	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	330, 1071
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	994
BslFI	GGGAC	3 cut(s)	155, 748, 815
BslI	CCNNNNNNNGG	5 cut(s)	166, 424, 874, 1000, 1103
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	3 cut(s)	155, 748, 815
BsmI	GAATGC	2 cut(s)	837, 858
BsnI	GGCC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	2 cut(s)	330, 1071
Bsp143I	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
BspACI	CCGC	4 cut(s)	353, 605, 1116, 1118
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	6 cut(s)	46, 352, 469, 649, 688, 708
BspDI	ATCGAT	1 cut(s)	588
BspFNI	CGCG	1 cut(s)	1118
BspLI	GGNNCC	4 cut(s)	171, 357, 603, 713
BspMAI	CTGCAG	2 cut(s)	520, 826
BspMI	ACCTGC	1 cut(s)	621
BspPI	GGATC	2 cut(s)	936, 1004
BspT107I	GGYRCC	1 cut(s)	355
BsrDI	GCAATG	2 cut(s)	408, 906
BsrI	ACTGG	6 cut(s)	75, 160, 171, 687, 742, 832
BssECI	CCNNGG	3 cut(s)	174, 576, 1116
BssMI	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	5 cut(s)	233, 419, 664, 806, 920
BstBAI	YACGTR	1 cut(s)	1063
BstC8I	GCNNGC	3 cut(s)	561, 829, 1071
BstDEI	CTNAG	8 cut(s)	54, 220, 360, 477, 657, 675, 716, 781
BstDSI	CCRYGG	1 cut(s)	1116
BstF5I	GGATG	4 cut(s)	319, 550, 760, 1126
BstFNI	CGCG	1 cut(s)	1118
BstH2I	RGCGCY	1 cut(s)	890
BstHHI	GCGC	2 cut(s)	653, 889
BstKTI	GATC	7 cut(s)	349, 393, 468, 588, 771, 931, 999
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 931
BstNI	CCWGG	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	575, 992
BstSFI	CTRYAG	2 cut(s)	516, 822
BstUI	CGCG	1 cut(s)	1118
BstV1I	GCAGC	5 cut(s)	62, 639, 660, 808, 836
BstX2I	RGATCY	3 cut(s)	346, 465, 928
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	3 cut(s)	346, 465, 928
Bsu15I	ATCGAT	1 cut(s)	588
Bsu36I	CCTNAGG	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	575
BsuTUI	ATCGAT	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	1116
BtsCI	GGATG	4 cut(s)	319, 550, 760, 1126
BtsIMutI	CAGTG	5 cut(s)	164, 680, 839, 955, 1129
BveI	ACCTGC	1 cut(s)	621
Cac8I	GCNNGC	3 cut(s)	561, 829, 1071
CaiI	CAGNNNCTG	2 cut(s)	166, 682
CfoI	GCGC	2 cut(s)	653, 889
Cfr13I	GGNCC	1 cut(s)	169
Cfr42I	CCGCGG	1 cut(s)	1119
ClaI	ATCGAT	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	268, 356, 790
CviAII	CATG	2 cut(s)	698, 869
CviQI	GTAC	3 cut(s)	268, 356, 790
DdeI	CTNAG	8 cut(s)	54, 220, 360, 477, 657, 675, 716, 781
DpnI	GATC	7 cut(s)	348, 392, 467, 587, 770, 930, 998
DpnII	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
EaeI	YGGCCR	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	3 cut(s)	207, 920, 931
Eco81I	CCTNAGG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	575
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	701, 872
FaiI	YATR	9 cut(s)	290, 366, 374, 459, 485, 699, 870, 896, 923
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 1040, 1072
FaqI	GGGAC	3 cut(s)	155, 748, 815
FatI	CATG	2 cut(s)	697, 868
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	6 cut(s)	51, 628, 649, 822, 825, 1116
FokI	GGATG	3 cut(s)	326, 557, 767
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	6 cut(s)	51, 628, 649, 822, 825, 1116
FspBI	CTAG	1 cut(s)	1010
GlaI	GCGC	2 cut(s)	652, 888
GluI	GCNGC	6 cut(s)	51, 628, 649, 822, 825, 1116
HaeII	RGCGCY	1 cut(s)	890
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	1 cut(s)	994
HhaI	GCGC	2 cut(s)	653, 889
Hin1II	CATG	2 cut(s)	701, 872
Hin6I	GCGC	2 cut(s)	651, 887
HinP1I	GCGC	2 cut(s)	651, 887
HinfI	GANTC	5 cut(s)	7, 203, 215, 512, 957
HpaII	CCGG	1 cut(s)	994
HphI	GGTGA	6 cut(s)	236, 245, 271, 716, 889, 982
Hpy188I	TCNGA	5 cut(s)	12, 81, 187, 313, 851
HpyAV	CCTTC	7 cut(s)	53, 182, 464, 877, 947, 998, 1075
HpyCH4III	ACNGT	5 cut(s)	233, 419, 664, 806, 920
HpyCH4IV	ACGT	1 cut(s)	1062
HpyCH4V	TGCA	8 cut(s)	241, 401, 518, 648, 758, 824, 837, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 931
HpyF3I	CTNAG	8 cut(s)	54, 220, 360, 477, 657, 675, 716, 781
HpySE526I	ACGT	1 cut(s)	1062
Hsp92II	CATG	2 cut(s)	701, 872
HspAI	GCGC	2 cut(s)	651, 887
KpnI	GGTACC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	1119
Kzo9I	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
LmnI	GCTCC	3 cut(s)	607, 717, 1066
Lsp1109I	GCAGC	5 cut(s)	62, 639, 660, 808, 836
LweI	GCATC	3 cut(s)	443, 535, 745
MaeI	CTAG	1 cut(s)	1010
MaeII	ACGT	1 cut(s)	1062
MaeIII	GTNAC	2 cut(s)	162, 678
MalI	GATC	7 cut(s)	348, 392, 467, 587, 770, 930, 998
MboI	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
MboII	GAAGA	7 cut(s)	356, 394, 460, 629, 892, 919, 922
MflI	RGATCY	3 cut(s)	346, 465, 928
MhlI	GDGCHC	2 cut(s)	330, 1071
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	4 cut(s)	291, 610, 621, 643
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	951
Mox20I	TGGCCA	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	3 cut(s)	41, 489, 864
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	4 cut(s)	53, 607, 976, 1118
MspI	CCGG	1 cut(s)	994
MspR9I	CCNGG	2 cut(s)	577, 994
Mva1269I	GAATGC	2 cut(s)	837, 858
MvaI	CCWGG	1 cut(s)	577
MvnI	CGCG	1 cut(s)	1118
MwoI	GCNNNNNNNGC	2 cut(s)	698, 931
NciI	CCSGG	1 cut(s)	994
NdeII	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
NlaIII	CATG	2 cut(s)	701, 872
NlaIV	GGNNCC	4 cut(s)	171, 357, 603, 713
NmuCI	GTSAC	2 cut(s)	162, 678
PctI	GAATGC	2 cut(s)	837, 858
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	203, 215, 512
PflMI	CCANNNNNTGG	2 cut(s)	166, 874
PkrI	GCNGC	6 cut(s)	52, 629, 650, 823, 826, 1117
PleI	GAGTC	1 cut(s)	951
PpsI	GAGTC	1 cut(s)	951
Ppu21I	YACGTR	1 cut(s)	1063
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	4 cut(s)	171, 357, 603, 713
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	2 cut(s)	520, 826
PstNI	CAGNNNCTG	2 cut(s)	166, 682
PsuI	RGATCY	3 cut(s)	346, 465, 928
PvuII	CAGCTG	2 cut(s)	53, 976
RsaI	GTAC	3 cut(s)	269, 357, 791
RsaNI	GTAC	3 cut(s)	268, 356, 790
RseI	CAYNNNNRTG	1 cut(s)	702
SacI	GAGCTC	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	1119
SaqAI	TTAA	3 cut(s)	41, 489, 864
SatI	GCNGC	6 cut(s)	51, 628, 649, 822, 825, 1116
Sau3AI	GATC	7 cut(s)	346, 390, 465, 585, 768, 928, 996
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	951
ScrFI	CCNGG	2 cut(s)	577, 994
SduI	GDGCHC	2 cut(s)	330, 1071
SfaNI	GCATC	3 cut(s)	443, 535, 745
SfcI	CTRYAG	2 cut(s)	516, 822
Sfr303I	CCGCGG	1 cut(s)	1119
SgrBI	CCGCGG	1 cut(s)	1119
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	702
Sse9I	AATT	4 cut(s)	291, 610, 621, 643
SsiI	CCGC	4 cut(s)	353, 605, 1116, 1118
SspMI	CTAG	1 cut(s)	1010
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	575, 992
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	5 cut(s)	233, 419, 664, 806, 920
TaiI	ACGT	1 cut(s)	1065
TaqI	TCGA	3 cut(s)	473, 588, 1026
TasI	AATT	4 cut(s)	291, 610, 621, 643
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	1118
TfiI	GAWTC	3 cut(s)	203, 215, 512
Tru1I	TTAA	3 cut(s)	41, 489, 864
Tru9I	TTAA	3 cut(s)	41, 489, 864
TscAI	CASTG	4 cut(s)	171, 687, 839, 955
TseFI	GTSAC	2 cut(s)	162, 678
TseI	GCWGC	5 cut(s)	50, 627, 648, 821, 824
Tsp45I	GTSAC	2 cut(s)	162, 678
TspDTI	ATGAA	4 cut(s)	195, 267, 446, 1098
TspRI	CASTG	4 cut(s)	171, 687, 839, 955
Van91I	CCANNNNNTGG	2 cut(s)	166, 874
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.