Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001982

Physical Location & Seq

Genomic Coordinates Forward (+)

9042772 .. 9053121

Gene Structure 10350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGTGATTACCTTCATGTTTCGCAGCCTCGTGTGATTGTGGACTTGTTTAAGGAAATGTGCATTGGTGGTTTTGAAGCTAGTGTAACCACTGTTCTGTATCTTTTATCAGCCATTGGTGAGTTGGGAAGTTACCTTGGAGGAGAGAGTGTTCATGGCTACTGCATTAAGATGGGATTTTCCTATAATTTACATGTGGTCACTGCTTTGATTTATGTGTATGCAAAGAACGGGGAAATTGACTTGGCACGTTGGATTTTCGATGGAGTTGCTGTGAAGGATGTTGTTTTGTGGAATTGTTTGGTAGGCAATGCATATCATTACACCCCGCCAGCTCCGGAGGTGCCGCCTGGGGTGGTGGCTCCTGATACACCTCACCCCCCGCCTCCGCCCCCTACAGTGGCACTAAACAATGGTGCTCAGGGTGTACTGGGTAATGAGGGCGCACAGAGTAATGAGGGTGAACATGGCGCACAGGGTAATGAGGGCAAACATGGAAATCAGGGCGCACATGGTAATCAGGGCGCACAGGCAAATCAAGGCTATTTTCATTGTGAATCCCATATTGATCGTAATGACCCTAACCATGACAGTGGAGAGAGCCTTGAAGATCTTGCGGTACCTGAGTATAATCCCATATTTTTGAAGAAGCTGATCACACTTGCAATGGATAGAAAGAACCGTGAAAAGGAAATGGCATCTGTTCTGCTTTCTGCGCTTCATATTGAGATCTTCTCGACTGAGGACATTGTTAATGGATTTGTCTTGCTTCGGGAATCTGCAGAGGATACAGAATTGGACATCTTGGATGCTTCAAATGAGCTTGCTTTCTTCCTGGCCAGGGCCGTGATTGATGATGTGTTGGCTCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTACCGCCAAATTGCAGCGCAACTGAGACGGTGCAAATGGCTCAGTCACTGGTTTCTGTGCATCATGCTGGTGAATATGTGAGGCAGTACAAGTCCATAATTCAGGAATACTTTTTCTCGGATGATATTCCTGTGCTCATTCAAAGCCTTAAAGATCTTGCGGTACCCGAGCATAATCCCATTTTTGTGAAGAAGCTGATCATACTTGCAATGGATGGAAAGAACCGTGAAAAGGAAATGGCTTCCGTTCTAGCTACTTTCTTCCCTTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05205 ko05206 map05205 map05206

Pfam Domains

Protein Families

MA3

Protein Analysis

390

Amino Acids

42.65

Weight (kDa)

4.82

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Collagen	PF01391	138 - 181	3.6e-06	Collagen triple helix repeat (20 copies)
MA3	PF02847	197 - 288	2.6e-19	MA3 domain
MA3	PF02847	327 - 384	9e-09	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48390 AT4G24800 AT4G24800 AT4G24800 AT4G24800 AT5G63190 AT5G63190
fragaria_vesca	FvH4_5g07020
malus_domestica	MD06G1160300.v1.1 MD14G1166300.v1.1
prunus_persica	Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1 Prupe.5G160100_v2.0.a1
pyrus_communis	pycom14g13890
rosa_chinensis	RchiOBHm_Chr7g0191511 RchiOBHm_Chr7g0191601 RchiOBHm_Chr7g0191611 RchiOBHm_Chr7g0191661
rosa_laevigata	RLG00000004436 RLG00000004439 RLG00000004442
rosa_multiflora	Rmu_sc0001123.1_g000008 Rmu_sc0003634.1_g000005 Rmu_sc0010599.1_g000004 Rmu_sc0010599.1_g000006 Rmu_sc0018698.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438450 Rroxscaffold_157G00438480 Rroxscaffold_3G00263670 Rroxscaffold_3G00263720
rosa_rugosa	Rorug06G0510500 Rorug06G0510700
rosa_samantha	Rh7AG119000 Rh7AG119300 Rh7AG119600 Rh7BG121500 Rh7BG121800 Rh7CG123800 Rh7CG124200 Rh7CG124600 Rh7DG121900 Rh7DG122400 Rh7DG122600
rosa_wichuraiana	Rw7G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	885
Acc65I	GGTACC	2 cut(s)	619, 1060
AccB1I	GGYRCC	3 cut(s)	343, 619, 1060
AccIII	TCCGGA	1 cut(s)	337
AciI	CCGC	8 cut(s)	329, 347, 383, 389, 617, 869, 902, 1058
AcoI	YGGCCR	1 cut(s)	837
AcsI	RAATTY	1 cut(s)	874
AfaI	GTAC	4 cut(s)	429, 621, 986, 1062
AfiI	CCNNNNNNNGG	4 cut(s)	400, 688, 841, 1129
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	5 cut(s)	77, 608, 646, 816, 1040
AjnI	CCWGG	3 cut(s)	349, 834, 839
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	6 cut(s)	80, 335, 652, 823, 1093, 1151
AluI	AGCT	6 cut(s)	80, 335, 652, 823, 1093, 1151
Alw21I	GWGCWC	2 cut(s)	421, 1035
Alw26I	GTCTC	1 cut(s)	917
AlwNI	CAGNNNCTG	1 cut(s)	946
Ama87I	CYCGRG	1 cut(s)	1064
Aor13HI	TCCGGA	1 cut(s)	337
AoxI	GGCC	2 cut(s)	837, 843
ApeKI	GCWGC	3 cut(s)	25, 891, 912
ApoI	RAATTY	1 cut(s)	874
Asp718I	GGTACC	2 cut(s)	619, 1060
AspLEI	GCGC	6 cut(s)	446, 473, 509, 527, 718, 917
AspS9I	GGNCC	1 cut(s)	843
AsuHPI	GGTGA	5 cut(s)	17, 131, 368, 473, 980
AvaI	CYCGRG	1 cut(s)	1064
BaeI	ACNNNNGTAYC	2 cut(s)	611, 644
BalI	TGGCCA	1 cut(s)	839
BanI	GGYRCC	3 cut(s)	343, 619, 1060
BauI	CACGAG	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	421, 1035
BbvI	GCAGC	3 cut(s)	37, 903, 924
BccI	CCATC	3 cut(s)	166, 257, 1106
BceAI	ACGGC	1 cut(s)	830
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	3 cut(s)	351, 836, 841
BciVI	GTATCC	1 cut(s)	781
BclI	TGATCA	2 cut(s)	654, 1095
BcoDI	GTCTC	1 cut(s)	917
BfaI	CTAG	2 cut(s)	81, 1148
BfmI	CTRYAG	2 cut(s)	396, 780
BfuAI	ACCTGC	1 cut(s)	885
BfuI	GTATCC	1 cut(s)	781
BglII	AGATCT	3 cut(s)	610, 729, 1051
BisI	GCNGC	4 cut(s)	26, 347, 892, 913
BlsI	GCNGC	4 cut(s)	27, 348, 893, 914
Bme1390I	CCNGG	3 cut(s)	351, 836, 841
BmeT110I	CYCGRG	1 cut(s)	1064
BmgT120I	GGNCC	1 cut(s)	843
BmiI	GGNNCC	5 cut(s)	345, 363, 621, 867, 1062
BmrFI	CCNGG	3 cut(s)	351, 836, 841
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	3 cut(s)	707, 799, 967
BmuI	ACTGGG	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
Bpu10I	CCTNAGC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	136, 350, 840
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 258, 288
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 688, 841, 1129
Bse1I	ACTGG	2 cut(s)	435, 951
Bse3DI	GCAATG	3 cut(s)	316, 672, 1113
BseAI	TCCGGA	1 cut(s)	337
BseBI	CCWGG	3 cut(s)	351, 836, 841
BseDI	CCNNGG	3 cut(s)	136, 350, 840
BseGI	GGATG	4 cut(s)	286, 814, 1024, 1117
BseLI	CCNNNNNNNGG	4 cut(s)	400, 688, 841, 1129
BseMI	GCAATG	3 cut(s)	316, 672, 1113
BseMII	CTCAG	5 cut(s)	434, 615, 732, 912, 953
BseNI	ACTGG	2 cut(s)	435, 951
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	37, 903, 924
BshFI	GGCC	2 cut(s)	839, 845
BshNI	GGYRCC	3 cut(s)	343, 619, 1060
BsiHKAI	GWGCWC	2 cut(s)	421, 1035
BsiHKCI	CYCGRG	1 cut(s)	1064
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	4 cut(s)	400, 688, 841, 1129
BsmAI	GTCTC	1 cut(s)	917
BsmBI	CGTCTC	1 cut(s)	917
BsnI	GGCC	2 cut(s)	839, 845
BsoBI	CYCGRG	1 cut(s)	1064
Bsp1286I	GDGCHC	2 cut(s)	421, 1035
Bsp13I	TCCGGA	1 cut(s)	337
Bsp143I	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
BspACI	CCGC	8 cut(s)	329, 347, 383, 389, 617, 869, 902, 1058
BspANI	GGCC	2 cut(s)	839, 845
BspCNI	CTCAG	5 cut(s)	433, 616, 733, 913, 952
BspEI	TCCGGA	1 cut(s)	337
BspLI	GGNNCC	5 cut(s)	345, 363, 621, 867, 1062
BspMAI	CTGCAG	1 cut(s)	784
BspMI	ACCTGC	1 cut(s)	885
BspT107I	GGYRCC	3 cut(s)	343, 619, 1060
BsrDI	GCAATG	3 cut(s)	316, 672, 1113
BsrI	ACTGG	2 cut(s)	435, 951
BssECI	CCNNGG	3 cut(s)	136, 350, 840
BssMI	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	30
Bst2UI	CCWGG	3 cut(s)	351, 836, 841
Bst4CI	ACNGT	6 cut(s)	94, 400, 593, 683, 928, 1124
BstC8I	GCNNGC	2 cut(s)	333, 825
BstDEI	CTNAG	5 cut(s)	420, 624, 741, 921, 939
BstEII	GGTNACC	1 cut(s)	897
BstF5I	GGATG	4 cut(s)	286, 814, 1024, 1117
BstHHI	GCGC	6 cut(s)	446, 473, 509, 527, 718, 917
BstKTI	GATC	6 cut(s)	571, 613, 657, 732, 1054, 1098
BstMAI	GTCTC	1 cut(s)	917
BstMBI	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
BstMWI	GCNNNNNNNGC	1 cut(s)	715
BstNI	CCWGG	3 cut(s)	351, 836, 841
BstNSI	RCATGY	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	897
BstSCI	CCNGG	3 cut(s)	349, 834, 839
BstSFI	CTRYAG	2 cut(s)	396, 780
BstV1I	GCAGC	3 cut(s)	37, 903, 924
BstX2I	RGATCY	3 cut(s)	610, 729, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	3 cut(s)	610, 729, 1051
BsuI	GTATCC	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	839, 845
BtsCI	GGATG	4 cut(s)	286, 814, 1024, 1117
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	5 cut(s)	90, 201, 405, 598, 944
BveI	ACCTGC	1 cut(s)	885
Cac8I	GCNNGC	2 cut(s)	333, 825
CaiI	CAGNNNCTG	1 cut(s)	946
CfoI	GCGC	6 cut(s)	446, 473, 509, 527, 718, 917
Cfr13I	GGNCC	1 cut(s)	843
Csp6I	GTAC	4 cut(s)	428, 620, 985, 1061
CviAII	CATG	8 cut(s)	17, 155, 194, 467, 494, 512, 587, 962
CviQI	GTAC	4 cut(s)	428, 620, 985, 1061
DdeI	CTNAG	5 cut(s)	420, 624, 741, 921, 939
DpnI	GATC	6 cut(s)	570, 612, 656, 731, 1053, 1097
DpnII	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
EaeI	YGGCCR	1 cut(s)	837
EciI	GGCGGA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	1064
Eco91I	GGTNACC	1 cut(s)	897
EcoO65I	GGTNACC	1 cut(s)	897
EcoRII	CCWGG	3 cut(s)	349, 834, 839
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	8 cut(s)	20, 158, 197, 470, 497, 515, 590, 965
FatI	CATG	8 cut(s)	16, 154, 193, 466, 493, 511, 586, 961
FauI	CCCGC	2 cut(s)	336, 390
FbaI	TGATCA	2 cut(s)	654, 1095
Fnu4HI	GCNGC	4 cut(s)	26, 347, 892, 913
FokI	GGATG	4 cut(s)	293, 821, 1031, 1124
Fsp4HI	GCNGC	4 cut(s)	26, 347, 892, 913
FspBI	CTAG	2 cut(s)	81, 1148
GlaI	GCGC	6 cut(s)	445, 472, 508, 526, 717, 916
GluI	GCNGC	4 cut(s)	26, 347, 892, 913
HaeIII	GGCC	2 cut(s)	839, 845
HapII	CCGG	1 cut(s)	338
HhaI	GCGC	6 cut(s)	446, 473, 509, 527, 718, 917
Hin1II	CATG	8 cut(s)	20, 158, 197, 470, 497, 515, 590, 965
Hin6I	GCGC	6 cut(s)	444, 471, 507, 525, 716, 915
HinP1I	GCGC	6 cut(s)	444, 471, 507, 525, 716, 915
HinfI	GANTC	2 cut(s)	557, 776
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	5 cut(s)	17, 131, 368, 473, 980
Hpy166II	GTNNAC	3 cut(s)	43, 428, 464
Hpy188I	TCNGA	1 cut(s)	1018
Hpy188III	TCNNGA	5 cut(s)	338, 365, 736, 773, 1001
Hpy8I	GTNNAC	3 cut(s)	43, 428, 464
HpyAV	CCTTC	3 cut(s)	23, 271, 1173
HpyCH4III	ACNGT	6 cut(s)	94, 400, 593, 683, 928, 1124
HpyCH4IV	ACGT	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	715
HpyF3I	CTNAG	5 cut(s)	420, 624, 741, 921, 939
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	8 cut(s)	20, 158, 197, 470, 497, 515, 590, 965
HspAI	GCGC	6 cut(s)	444, 471, 507, 525, 716, 915
Kpn2I	TCCGGA	1 cut(s)	337
KpnI	GGTACC	2 cut(s)	623, 1064
Ksp22I	TGATCA	2 cut(s)	654, 1095
Kzo9I	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
LmnI	GCTCC	3 cut(s)	340, 367, 871
Lsp1109I	GCAGC	3 cut(s)	37, 903, 924
LweI	GCATC	3 cut(s)	707, 799, 967
MaeI	CTAG	2 cut(s)	81, 1148
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	5 cut(s)	85, 131, 199, 897, 942
MalI	GATC	6 cut(s)	570, 612, 656, 731, 1053, 1097
MboI	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
MboII	GAAGA	7 cut(s)	620, 658, 724, 823, 893, 1099, 1150
MflI	RGATCY	3 cut(s)	610, 729, 1051
MhlI	GDGCHC	2 cut(s)	421, 1035
MlsI	TGGCCA	1 cut(s)	839
MluCI	AATT	8 cut(s)	187, 237, 295, 794, 874, 885, 907, 996
MluNI	TGGCCA	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	233
Mox20I	TGGCCA	1 cut(s)	839
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	839
MseI	TTAA	4 cut(s)	51, 168, 753, 1047
MslI	CAYNNNNRTG	4 cut(s)	170, 591, 966, 1082
Msp20I	TGGCCA	1 cut(s)	839
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	3 cut(s)	351, 836, 841
MvaI	CCWGG	3 cut(s)	351, 836, 841
MwoI	GCNNNNNNNGC	1 cut(s)	715
NdeII	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
NlaIII	CATG	8 cut(s)	20, 158, 197, 470, 497, 515, 590, 965
NlaIV	GGNNCC	5 cut(s)	345, 363, 621, 867, 1062
NmuCI	GTSAC	2 cut(s)	199, 942
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	197
PciI	ACATGT	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	557, 776
PkrI	GCNGC	4 cut(s)	27, 348, 893, 914
PscI	ACATGT	1 cut(s)	193
Psp6I	CCWGG	3 cut(s)	349, 834, 839
PspEI	GGTNACC	1 cut(s)	897
PspGI	CCWGG	3 cut(s)	349, 834, 839
PspN4I	GGNNCC	5 cut(s)	345, 363, 621, 867, 1062
PspPI	GGNCC	1 cut(s)	843
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PstI	CTGCAG	1 cut(s)	784
PstNI	CAGNNNCTG	1 cut(s)	946
PsuI	RGATCY	3 cut(s)	610, 729, 1051
RsaI	GTAC	4 cut(s)	429, 621, 986, 1062
RsaNI	GTAC	4 cut(s)	428, 620, 985, 1061
RseI	CAYNNNNRTG	4 cut(s)	170, 591, 966, 1082
SaqAI	TTAA	4 cut(s)	51, 168, 753, 1047
SatI	GCNGC	4 cut(s)	26, 347, 892, 913
Sau3AI	GATC	6 cut(s)	568, 610, 654, 729, 1051, 1095
Sau96I	GGNCC	1 cut(s)	843
ScrFI	CCNGG	3 cut(s)	351, 836, 841
SduI	GDGCHC	2 cut(s)	421, 1035
SfaNI	GCATC	3 cut(s)	707, 799, 967
SfcI	CTRYAG	2 cut(s)	396, 780
SmiMI	CAYNNNNRTG	4 cut(s)	170, 591, 966, 1082
Sse9I	AATT	8 cut(s)	187, 237, 295, 794, 874, 885, 907, 996
SsiI	CCGC	8 cut(s)	329, 347, 383, 389, 617, 869, 902, 1058
SspMI	CTAG	2 cut(s)	81, 1148
StyD4I	CCNGG	3 cut(s)	349, 834, 839
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	6 cut(s)	94, 400, 593, 683, 928, 1124
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	261, 737
TasI	AATT	8 cut(s)	187, 237, 295, 794, 874, 885, 907, 996
TatI	WGTACW	2 cut(s)	427, 984
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	557, 776
Tru1I	TTAA	4 cut(s)	51, 168, 753, 1047
Tru9I	TTAA	4 cut(s)	51, 168, 753, 1047
TscAI	CASTG	5 cut(s)	97, 208, 405, 598, 951
TseFI	GTSAC	2 cut(s)	199, 942
TseI	GCWGC	3 cut(s)	25, 891, 912
Tsp45I	GTSAC	2 cut(s)	199, 942
TspDTI	ATGAA	5 cut(s)	5, 143, 539, 710, 1155
TspGWI	ACGGA	1 cut(s)	1132
TspRI	CASTG	5 cut(s)	97, 208, 405, 598, 951
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	2 cut(s)	81, 1148
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.